Wall clock time and date at job start Tue Mar 31 2020 06:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47368 * 2 1 4 4 C 1.52996 * 109.46995 * 239.99775 * 2 1 3 5 5 C 1.52998 * 109.47270 * 300.00041 * 4 2 1 6 6 C 1.52998 * 109.47292 * 300.00068 * 5 4 2 7 7 C 1.52996 * 109.47048 * 60.00174 * 6 5 4 8 8 H 1.08994 * 109.47414 * 59.99906 * 7 6 5 9 9 C 1.52998 * 109.47048 * 179.97438 * 7 6 5 10 10 C 1.52998 * 109.47012 * 120.00047 * 2 1 3 11 11 N 1.46506 * 109.47262 * 300.00018 * 10 2 1 12 12 C 1.34777 * 119.99873 * 275.00296 * 11 10 2 13 13 O 1.21592 * 119.99797 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99902 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99966 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47337 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47022 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.46585 * 179.97438 * 17 16 15 19 19 H 1.07993 * 120.00411 * 359.97438 * 18 17 16 20 20 C 1.37883 * 119.99862 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99663 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00136 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46765 * 90.00302 * 22 20 18 24 24 H 1.48499 * 109.47159 * 209.99891 * 22 20 18 25 25 H 1.48498 * 109.47267 * 329.99961 * 22 20 18 26 26 H 1.09002 * 109.47176 * 299.99989 * 1 2 3 27 27 H 1.09007 * 109.47050 * 60.00027 * 1 2 3 28 28 H 1.09001 * 109.47368 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46968 * 179.97438 * 4 2 1 30 30 H 1.09007 * 109.47060 * 60.00205 * 4 2 1 31 31 H 1.09002 * 109.46987 * 180.02562 * 5 4 2 32 32 H 1.09007 * 109.46959 * 60.00323 * 5 4 2 33 33 H 1.08994 * 109.47090 * 299.99882 * 6 5 4 34 34 H 1.09001 * 109.47093 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47080 * 179.97438 * 9 7 6 36 36 H 1.08993 * 109.47207 * 299.99947 * 9 7 6 37 37 H 1.09002 * 109.46901 * 59.99992 * 9 7 6 38 38 H 1.09000 * 109.47516 * 179.97438 * 10 2 1 39 39 H 0.96995 * 120.00050 * 94.72411 * 11 10 2 40 40 H 0.96999 * 120.00050 * 0.02562 * 14 12 11 41 41 H 1.09005 * 109.47136 * 300.00071 * 15 14 12 42 42 H 1.08996 * 109.47174 * 59.99413 * 15 14 12 43 43 H 1.09000 * 109.46757 * 299.99461 * 16 15 14 44 44 H 1.09002 * 109.47113 * 59.99591 * 16 15 14 45 45 H 1.09000 * 109.46771 * 299.99277 * 17 16 15 46 46 H 1.08997 * 109.47271 * 59.99996 * 17 16 15 47 47 H 0.97005 * 120.00108 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5300 -2.1638 -1.2492 6 6 2.0399 -2.8850 0.0001 7 6 1.5299 -2.1638 1.2493 8 1 0.4399 -2.1638 1.2493 9 6 2.0393 -2.8854 2.4985 10 6 2.0400 -0.7213 1.2492 11 7 1.5516 -0.0306 2.4455 12 6 2.2284 1.0262 2.9369 13 8 3.2445 1.4061 2.3877 14 7 1.7789 1.6618 4.0371 15 6 2.5148 2.8102 4.5716 16 6 1.7975 3.3424 5.8139 17 6 2.5658 4.5421 6.3717 18 6 1.8588 5.0666 7.5949 19 1 0.9521 4.5920 7.9396 20 6 2.3697 6.1524 8.2739 21 7 3.4737 6.7306 7.8538 22 14 1.4931 6.8030 9.7897 23 1 2.0166 6.1157 10.9974 24 1 1.7302 8.2640 9.9098 25 1 0.0356 6.5465 9.6669 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 -0.7209 -1.2494 30 1 1.6766 -0.2074 -2.1392 31 1 1.8937 -2.6777 -2.1389 32 1 0.4399 -2.1637 -1.2492 33 1 3.1299 -2.8851 0.0001 34 1 1.6762 -3.9126 0.0003 35 1 1.6763 -2.3713 3.3885 36 1 1.6756 -3.9129 2.4982 37 1 3.1293 -2.8858 2.4987 38 1 3.1300 -0.7217 1.2491 39 1 0.7390 -0.3315 2.8814 40 1 0.9685 1.3584 4.4754 41 1 3.5251 2.5012 4.8403 42 1 2.5637 3.5942 3.8160 43 1 0.7872 3.6513 5.5456 44 1 1.7491 2.5581 6.5694 45 1 3.5762 4.2336 6.6399 46 1 2.6138 5.3261 5.6160 47 1 3.8334 7.4943 8.3317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081492596.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:54 Heat of formation + Delta-G solvation = -95.949348 kcal Electronic energy + Delta-G solvation = -22581.369502 eV Core-core repulsion = 19375.374711 eV Total energy + Delta-G solvation = -3205.994791 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.53719 -39.86676 -36.96222 -35.26746 -35.10483 -34.06917 -32.98492 -31.14697 -28.59912 -27.46486 -27.05178 -24.96640 -23.26092 -22.29800 -22.13559 -21.53079 -19.85998 -19.05720 -18.52249 -17.49279 -16.80810 -16.54206 -16.17797 -15.96080 -15.59754 -15.41438 -15.26251 -14.74610 -14.46526 -14.27300 -13.98793 -13.72053 -13.55628 -13.47974 -13.18164 -12.87876 -12.75377 -12.54356 -12.48263 -12.36379 -12.21973 -11.99675 -11.77294 -11.67064 -11.64231 -11.39382 -11.30391 -11.22237 -11.03536 -10.88590 -10.55395 -10.27081 -9.68731 -8.19345 -6.30999 1.41649 1.43329 1.54217 1.74271 2.18561 2.42153 3.14364 3.33837 3.63553 3.77810 3.92664 4.16398 4.16814 4.18620 4.23326 4.38509 4.41676 4.51975 4.56188 4.57386 4.68886 4.79745 4.86742 4.95925 4.96387 4.99879 5.02226 5.06953 5.12650 5.17184 5.22308 5.27798 5.30147 5.35939 5.41788 5.47335 5.49256 5.55856 5.59192 5.69481 5.71114 5.84362 6.06359 6.22780 6.86432 7.16001 7.38584 7.63272 8.92948 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038942 B = 0.002569 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.836483 B =10898.621140 C =11067.322352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 H 0.036 0.964 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.090 4.090 8 H 0.096 0.904 9 C -0.147 4.147 10 C 0.175 3.825 11 N -0.722 5.722 12 C 0.697 3.303 13 O -0.642 6.642 14 N -0.731 5.731 15 C 0.151 3.849 16 C -0.099 4.099 17 C 0.023 3.977 18 C -0.540 4.540 19 H 0.067 0.933 20 C -0.005 4.005 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.260 1.260 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.040 0.960 38 H 0.053 0.947 39 H 0.410 0.590 40 H 0.411 0.589 41 H 0.044 0.956 42 H 0.043 0.957 43 H 0.068 0.932 44 H 0.068 0.932 45 H -0.009 1.009 46 H -0.009 1.009 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.702 -23.192 -16.650 30.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 H 0.055 0.945 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.148 4.148 7 C -0.109 4.109 8 H 0.114 0.886 9 C -0.204 4.204 10 C 0.070 3.930 11 N -0.377 5.377 12 C 0.397 3.603 13 O -0.524 6.524 14 N -0.387 5.387 15 C 0.026 3.974 16 C -0.137 4.137 17 C -0.014 4.014 18 C -0.578 4.578 19 H 0.085 0.915 20 C -0.202 4.202 21 N -0.576 5.576 22 Si 0.793 3.207 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.184 1.184 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.246 0.754 40 H 0.247 0.753 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.010 0.990 46 H 0.010 0.990 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.669 -22.716 -17.098 29.724 hybrid contribution -0.251 0.912 1.174 1.507 sum -8.920 -21.804 -15.925 28.435 Atomic orbital electron populations 1.21857 0.93553 1.02905 1.01527 1.21452 0.97468 0.98313 0.95141 0.94509 1.21528 1.00098 0.96772 0.96595 1.21586 1.01681 0.94089 0.98084 1.21567 1.00633 0.99609 0.92945 1.21407 1.01842 0.91441 0.96202 0.88572 1.21827 1.00633 1.00909 0.97044 1.20861 0.97853 0.91582 0.82695 1.45001 1.29698 1.31754 1.31278 1.16200 0.82937 0.80568 0.80587 1.90885 1.28344 1.69742 1.63395 1.45022 1.30714 1.33678 1.29285 1.21038 0.94850 0.86422 0.95094 1.21577 0.99248 0.98055 0.94808 1.18942 0.94821 0.92809 0.94855 1.21680 1.10348 1.14065 1.11721 0.91459 1.26050 0.95790 0.97111 1.01275 1.70121 1.22505 1.23140 1.41879 0.85396 0.79259 0.77193 0.78882 1.19780 1.21062 1.18358 0.93351 0.92703 0.90112 0.93150 0.91355 0.90892 0.90379 0.92685 0.89626 0.92758 0.90801 0.94090 0.92837 0.75392 0.75261 0.93765 0.93819 0.91374 0.91311 0.99027 0.99041 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.34 71.98 0.60 -1.47 16 2 C -0.10 -2.02 2.87 -10.80 -0.03 -2.05 16 3 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 4 C -0.11 -1.75 5.45 30.59 0.17 -1.59 16 5 C -0.12 -1.23 5.65 30.59 0.17 -1.06 16 6 C -0.11 -1.18 5.20 30.59 0.16 -1.02 16 7 C -0.09 -1.12 2.02 -10.79 -0.02 -1.14 16 8 H 0.10 0.89 6.43 -2.39 -0.02 0.87 16 9 C -0.15 -1.90 9.04 71.98 0.65 -1.25 16 10 C 0.18 3.48 1.59 44.99 0.07 3.55 16 11 N -0.72 -15.13 3.62 -457.79 -1.66 -16.79 16 12 C 0.70 21.66 8.53 179.06 1.53 23.19 16 13 O -0.64 -26.62 16.01 -4.01 -0.06 -26.69 16 14 N -0.73 -21.14 5.56 -478.53 -2.66 -23.80 16 15 C 0.15 5.59 5.67 86.38 0.49 6.08 16 16 C -0.10 -3.88 5.27 30.60 0.16 -3.72 16 17 C 0.02 1.24 4.97 29.85 0.15 1.39 16 18 C -0.54 -30.40 9.11 25.60 0.23 -30.17 16 19 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 20 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 21 N -0.94 -57.84 13.29 21.45 0.28 -57.55 16 22 Si 0.97 44.05 29.54 68.60 2.03 46.07 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 25 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 26 H 0.05 0.77 7.60 -2.39 -0.02 0.75 16 27 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.08 0.83 4.81 -2.39 -0.01 0.82 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 0.66 6.43 -2.38 -0.02 0.65 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.05 0.74 7.45 -2.39 -0.02 0.72 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.05 1.44 7.58 -2.39 -0.02 1.42 16 39 H 0.41 5.83 8.41 -92.71 -0.78 5.05 16 40 H 0.41 8.82 8.49 -92.71 -0.79 8.03 16 41 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 42 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 45 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 46 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 47 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 Total: -1.00 -73.02 363.89 2.09 -70.92 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -0.63 Total: 16.91 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 4.79 Total: -9.07 kcal Atomic # 7 Polarization: -94.12 SS G_CDS: -4.03 Total: -98.15 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.06 Total: -26.69 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -73.02 2.09 -70.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081492596.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.027 kcal (2) G-P(sol) polarization free energy of solvation -73.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds