Wall clock time and date at job start Tue Mar 31 2020 06:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.46603 * 2 1 4 4 C 1.52994 * 109.46933 * 240.00344 * 2 1 3 5 5 C 1.52993 * 109.47052 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47434 * 60.00142 * 5 4 2 7 7 C 1.53005 * 109.46564 * 299.99960 * 6 5 4 8 8 C 1.52996 * 109.47025 * 120.00188 * 2 1 3 9 9 H 1.09002 * 109.47168 * 299.99596 * 8 2 1 10 10 N 1.46501 * 109.47210 * 60.00201 * 8 2 1 11 11 C 1.46496 * 119.99865 * 111.23489 * 10 8 2 12 12 C 1.34771 * 119.99785 * 291.23350 * 10 8 2 13 13 O 1.21281 * 120.00382 * 353.18659 * 12 10 8 14 14 C 1.50700 * 119.99917 * 173.18569 * 12 10 8 15 15 N 1.46903 * 109.47422 * 180.02562 * 14 12 10 16 16 C 1.46898 * 111.00114 * 66.04302 * 15 14 12 17 17 C 1.46899 * 111.00348 * 190.00026 * 15 14 12 18 18 C 1.50695 * 109.47189 * 169.99880 * 17 15 14 19 19 H 1.08004 * 120.00055 * 359.97438 * 18 17 15 20 20 C 1.37879 * 119.99715 * 179.97438 * 18 17 15 21 21 N 1.31508 * 120.00335 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99763 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47363 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47227 * 120.00025 * 22 20 18 25 25 H 1.48497 * 109.47495 * 239.99899 * 22 20 18 26 26 H 1.08999 * 109.47051 * 291.45004 * 1 2 3 27 27 H 1.08997 * 109.47207 * 51.45321 * 1 2 3 28 28 H 1.08999 * 109.46872 * 171.45582 * 1 2 3 29 29 H 1.08999 * 109.47055 * 300.00047 * 4 2 1 30 30 H 1.09002 * 109.47255 * 59.99660 * 4 2 1 31 31 H 1.09002 * 109.47388 * 179.97438 * 5 4 2 32 32 H 1.08999 * 109.47338 * 300.00007 * 5 4 2 33 33 H 1.08999 * 109.46968 * 59.99639 * 6 5 4 34 34 H 1.08999 * 109.47360 * 180.02562 * 6 5 4 35 35 H 1.08999 * 109.47216 * 299.99527 * 7 6 5 36 36 H 1.09002 * 109.46933 * 180.02562 * 7 6 5 37 37 H 1.09003 * 109.47101 * 269.55430 * 11 10 8 38 38 H 1.08998 * 109.47332 * 29.55915 * 11 10 8 39 39 H 1.09000 * 109.47115 * 149.56102 * 11 10 8 40 40 H 1.09000 * 109.47365 * 299.99701 * 14 12 10 41 41 H 1.09001 * 109.47217 * 60.00119 * 14 12 10 42 42 H 1.08997 * 109.46955 * 59.99953 * 16 15 14 43 43 H 1.09000 * 109.47327 * 180.02562 * 16 15 14 44 44 H 1.08999 * 109.47118 * 300.00574 * 16 15 14 45 45 H 1.09005 * 109.46590 * 290.00117 * 17 15 14 46 46 H 1.09006 * 109.47065 * 49.99772 * 17 15 14 47 47 H 0.97004 * 120.00397 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5699 -0.7206 -1.2496 6 6 4.0806 -1.4416 -0.0004 7 6 3.5705 -0.7203 1.2488 8 6 2.0400 -0.7213 1.2492 9 1 1.6767 -0.2074 2.1392 10 7 1.5517 -2.1025 1.2491 11 6 2.4898 -3.2110 1.0558 12 6 0.2396 -2.3533 1.4270 13 8 -0.5178 -1.4492 1.7096 14 6 -0.2866 -3.7572 1.2746 15 7 -1.7356 -3.7661 1.5163 16 6 -2.4475 -3.0112 0.4765 17 6 -2.2452 -5.1406 1.6111 18 6 -3.6708 -5.1153 2.0989 19 1 -4.1503 -4.1724 2.3171 20 6 -4.3631 -6.2958 2.2666 21 7 -3.7792 -7.4439 2.0013 22 14 -6.1300 -6.2645 2.8719 23 1 -6.5513 -4.8585 3.0971 24 1 -7.0132 -6.8884 1.8540 25 1 -6.2306 -7.0218 4.1453 26 1 -0.3633 0.3758 0.9565 27 1 -0.3633 0.6404 -0.8037 28 1 -0.3633 -1.0163 -0.1527 29 1 1.6766 -1.7488 -1.2493 30 1 1.6766 -0.2073 -2.1392 31 1 3.9333 -1.2348 -2.1394 32 1 3.9329 0.3072 -1.2498 33 1 3.7175 -2.4694 -0.0003 34 1 5.1705 -1.4408 -0.0005 35 1 3.9335 0.3074 1.2487 36 1 3.9347 -1.2337 2.1388 37 1 2.5688 -3.4389 -0.0072 38 1 3.4698 -2.9291 1.4408 39 1 2.1287 -4.0899 1.5899 40 1 -0.0852 -4.1131 0.2642 41 1 0.2062 -4.4102 1.9949 42 1 -2.2528 -3.4615 -0.4969 43 1 -3.5181 -3.0335 0.6799 44 1 -2.0997 -1.9782 0.4750 45 1 -2.2055 -5.6112 0.6287 46 1 -1.6317 -5.7081 2.3110 47 1 -4.2661 -8.2745 2.1196 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083217222.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:09 Heat of formation + Delta-G solvation = 0.731599 kcal Electronic energy + Delta-G solvation = -24154.801283 eV Core-core repulsion = 20952.998892 eV Total energy + Delta-G solvation = -3201.802391 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.94403 -38.21096 -35.80264 -34.62791 -32.79429 -32.44317 -30.63936 -28.00335 -27.54700 -26.80071 -25.63469 -24.10558 -22.35812 -21.48660 -20.88792 -19.83188 -18.54172 -16.85664 -16.51138 -16.27374 -15.46164 -15.03037 -14.74668 -14.51347 -14.28824 -13.96530 -13.84479 -13.56787 -13.19241 -13.11981 -12.60005 -12.35384 -12.24335 -12.05405 -11.98942 -11.77828 -11.57869 -11.49172 -11.20356 -10.95403 -10.82680 -10.65578 -10.56956 -10.47552 -10.31207 -10.18200 -10.06677 -9.90228 -9.31970 -8.89758 -8.41253 -8.28892 -7.17748 -6.00610 -4.00799 3.03196 3.12224 3.34014 3.41225 3.47915 4.44756 4.49629 4.55324 4.62116 4.90573 5.00779 5.04976 5.10250 5.14139 5.30139 5.32190 5.33439 5.35636 5.38788 5.45902 5.55650 5.59579 5.79159 5.79866 5.82844 5.85355 5.89477 5.99646 6.02400 6.07329 6.18188 6.26550 6.34550 6.36447 6.44704 6.70978 6.80949 6.97602 7.26619 7.33921 7.57030 7.84730 8.08880 8.22853 8.53739 8.65254 9.07783 9.63308 11.10554 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034229 B = 0.003818 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.824540 B = 7332.208944 C = 7650.674877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.070 0.930 4 C -0.113 4.113 5 C -0.116 4.116 6 C -0.161 4.161 7 C -0.124 4.124 8 C 0.156 3.844 9 H 0.077 0.923 10 N -0.616 5.616 11 C 0.068 3.932 12 C 0.511 3.489 13 O -0.503 6.503 14 C 0.039 3.961 15 N -0.522 5.522 16 C 0.033 3.967 17 C 0.193 3.807 18 C -0.503 4.503 19 H 0.065 0.935 20 C 0.054 3.946 21 N -0.901 5.901 22 Si 0.898 3.102 23 H -0.271 1.271 24 H -0.285 1.285 25 H -0.284 1.284 26 H 0.075 0.925 27 H 0.031 0.969 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.047 0.953 41 H 0.094 0.906 42 H 0.002 0.998 43 H 0.072 0.928 44 H 0.067 0.933 45 H -0.009 1.009 46 H 0.029 0.971 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.120 11.919 -5.656 22.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 H 0.089 0.911 4 C -0.150 4.150 5 C -0.153 4.153 6 C -0.198 4.198 7 C -0.162 4.162 8 C 0.053 3.947 9 H 0.095 0.905 10 N -0.353 5.353 11 C -0.074 4.074 12 C 0.300 3.700 13 O -0.377 6.377 14 C -0.093 4.093 15 N -0.247 5.247 16 C -0.116 4.116 17 C 0.068 3.932 18 C -0.542 4.542 19 H 0.084 0.916 20 C -0.147 4.147 21 N -0.541 5.541 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.210 1.210 26 H 0.094 0.906 27 H 0.050 0.950 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.118 0.882 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.112 0.888 42 H 0.021 0.979 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.009 0.991 46 H 0.047 0.953 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 17.561 12.447 -5.039 22.106 hybrid contribution -0.619 -0.616 -0.561 1.038 sum 16.941 11.831 -5.599 21.409 Atomic orbital electron populations 1.22332 0.93524 1.02459 1.01662 1.21554 0.97110 0.98675 0.94508 0.91142 1.21557 0.95006 1.01057 0.97392 1.21496 0.95914 1.00316 0.97620 1.22528 1.00252 1.02690 0.94337 1.21782 0.94332 1.01580 0.98478 1.20982 0.93135 0.82529 0.98099 0.90509 1.47878 1.07344 1.06089 1.74021 1.22231 0.94530 0.89852 1.00825 1.20772 0.80928 0.91573 0.76718 1.90681 1.56351 1.46100 1.44582 1.21992 0.93595 0.93103 1.00571 1.61848 0.98779 1.18255 1.45820 1.22387 1.00520 0.97834 0.90828 1.19781 0.95934 0.81846 0.95623 1.21204 0.96704 0.92892 1.43356 0.91642 1.24979 0.98535 0.95380 0.95764 1.69963 1.37101 0.97398 1.49625 0.86434 0.84473 0.78184 0.78319 1.19581 1.21149 1.21019 0.90628 0.95007 0.91731 0.91870 0.92415 0.92317 0.92496 0.88200 0.92267 0.90767 0.91340 0.92339 0.89850 0.91278 0.93492 0.88837 0.97929 0.90877 0.91488 0.99109 0.95279 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 7.34 37.16 0.27 -1.74 16 2 C -0.10 -1.11 2.54 -90.62 -0.23 -1.34 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.11 -1.15 5.04 -26.74 -0.13 -1.28 16 5 C -0.12 -0.95 5.92 -26.73 -0.16 -1.10 16 6 C -0.16 -1.20 5.13 -26.73 -0.14 -1.34 16 7 C -0.12 -1.01 4.94 -26.70 -0.13 -1.15 16 8 C 0.16 1.74 2.60 -67.91 -0.18 1.56 16 9 H 0.08 0.98 7.99 -51.93 -0.42 0.57 16 10 N -0.62 -7.64 2.23 -175.55 -0.39 -8.04 16 11 C 0.07 0.64 7.86 59.84 0.47 1.11 16 12 C 0.51 8.43 5.68 -10.99 -0.06 8.36 16 13 O -0.50 -9.69 9.95 5.56 0.06 -9.63 16 14 C 0.04 0.70 4.17 -4.97 -0.02 0.68 16 15 N -0.52 -11.89 4.49 -245.82 -1.10 -12.99 16 16 C 0.03 0.70 9.03 60.06 0.54 1.24 16 17 C 0.19 5.10 4.72 -4.98 -0.02 5.08 16 18 C -0.50 -14.48 8.46 -34.44 -0.29 -14.78 16 19 H 0.07 1.90 7.12 -52.48 -0.37 1.53 16 20 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 21 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 22 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 H 0.07 1.21 6.67 -51.93 -0.35 0.86 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 1.05 4.50 -51.93 -0.23 0.81 16 29 H 0.06 0.73 7.05 -51.93 -0.37 0.36 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.10 0.74 3.09 -53.98 -0.17 0.57 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.53 7.31 -51.93 -0.38 0.15 16 37 H 0.06 0.50 6.46 -51.93 -0.34 0.16 16 38 H 0.08 0.61 4.78 -51.93 -0.25 0.36 16 39 H 0.07 0.65 6.52 -51.93 -0.34 0.32 16 40 H 0.05 0.80 8.12 -51.93 -0.42 0.37 16 41 H 0.09 1.59 7.00 -51.93 -0.36 1.23 16 42 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 43 H 0.07 1.68 6.76 -51.93 -0.35 1.33 16 44 H 0.07 1.37 5.03 -51.93 -0.26 1.11 16 45 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 46 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 47 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 337.60 15.07 5.09 5.09 Total: -1.00 -31.70 337.60 -8.77 -40.47 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -7.95 Total: -2.54 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -0.18 Total: -3.23 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -0.76 Total: -47.18 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.06 Total: -9.63 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.70 -8.77 -40.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083217222.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.201 kcal (2) G-P(sol) polarization free energy of solvation -31.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds