Wall clock time and date at job start Tue Mar 31 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.46603 * 2 1 4 4 C 1.52994 * 109.46933 * 240.00344 * 2 1 3 5 5 C 1.52993 * 109.47052 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47434 * 60.00142 * 5 4 2 7 7 C 1.53005 * 109.46564 * 299.99960 * 6 5 4 8 8 C 1.52996 * 109.47025 * 120.00188 * 2 1 3 9 9 H 1.09002 * 109.47168 * 299.99596 * 8 2 1 10 10 N 1.46501 * 109.47210 * 60.00201 * 8 2 1 11 11 C 1.46496 * 119.99865 * 111.23489 * 10 8 2 12 12 C 1.34771 * 119.99785 * 291.23350 * 10 8 2 13 13 O 1.21281 * 120.00382 * 353.18659 * 12 10 8 14 14 C 1.50700 * 119.99917 * 173.18569 * 12 10 8 15 15 N 1.46903 * 109.47422 * 180.02562 * 14 12 10 16 16 C 1.46898 * 111.00114 * 66.04302 * 15 14 12 17 17 C 1.46899 * 111.00348 * 190.00026 * 15 14 12 18 18 C 1.50695 * 109.47189 * 169.99880 * 17 15 14 19 19 H 1.08004 * 120.00055 * 359.97438 * 18 17 15 20 20 C 1.37879 * 119.99715 * 179.97438 * 18 17 15 21 21 N 1.31508 * 120.00335 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99763 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47363 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47227 * 120.00025 * 22 20 18 25 25 H 1.48497 * 109.47495 * 239.99899 * 22 20 18 26 26 H 1.08999 * 109.47051 * 291.45004 * 1 2 3 27 27 H 1.08997 * 109.47207 * 51.45321 * 1 2 3 28 28 H 1.08999 * 109.46872 * 171.45582 * 1 2 3 29 29 H 1.08999 * 109.47055 * 300.00047 * 4 2 1 30 30 H 1.09002 * 109.47255 * 59.99660 * 4 2 1 31 31 H 1.09002 * 109.47388 * 179.97438 * 5 4 2 32 32 H 1.08999 * 109.47338 * 300.00007 * 5 4 2 33 33 H 1.08999 * 109.46968 * 59.99639 * 6 5 4 34 34 H 1.08999 * 109.47360 * 180.02562 * 6 5 4 35 35 H 1.08999 * 109.47216 * 299.99527 * 7 6 5 36 36 H 1.09002 * 109.46933 * 180.02562 * 7 6 5 37 37 H 1.09003 * 109.47101 * 269.55430 * 11 10 8 38 38 H 1.08998 * 109.47332 * 29.55915 * 11 10 8 39 39 H 1.09000 * 109.47115 * 149.56102 * 11 10 8 40 40 H 1.09000 * 109.47365 * 299.99701 * 14 12 10 41 41 H 1.09001 * 109.47217 * 60.00119 * 14 12 10 42 42 H 1.08997 * 109.46955 * 59.99953 * 16 15 14 43 43 H 1.09000 * 109.47327 * 180.02562 * 16 15 14 44 44 H 1.08999 * 109.47118 * 300.00574 * 16 15 14 45 45 H 1.09005 * 109.46590 * 290.00117 * 17 15 14 46 46 H 1.09006 * 109.47065 * 49.99772 * 17 15 14 47 47 H 0.97004 * 120.00397 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5699 -0.7206 -1.2496 6 6 4.0806 -1.4416 -0.0004 7 6 3.5705 -0.7203 1.2488 8 6 2.0400 -0.7213 1.2492 9 1 1.6767 -0.2074 2.1392 10 7 1.5517 -2.1025 1.2491 11 6 2.4898 -3.2110 1.0558 12 6 0.2396 -2.3533 1.4270 13 8 -0.5178 -1.4492 1.7096 14 6 -0.2866 -3.7572 1.2746 15 7 -1.7356 -3.7661 1.5163 16 6 -2.4475 -3.0112 0.4765 17 6 -2.2452 -5.1406 1.6111 18 6 -3.6708 -5.1153 2.0989 19 1 -4.1503 -4.1724 2.3171 20 6 -4.3631 -6.2958 2.2666 21 7 -3.7792 -7.4439 2.0013 22 14 -6.1300 -6.2645 2.8719 23 1 -6.5513 -4.8585 3.0971 24 1 -7.0132 -6.8884 1.8540 25 1 -6.2306 -7.0218 4.1453 26 1 -0.3633 0.3758 0.9565 27 1 -0.3633 0.6404 -0.8037 28 1 -0.3633 -1.0163 -0.1527 29 1 1.6766 -1.7488 -1.2493 30 1 1.6766 -0.2073 -2.1392 31 1 3.9333 -1.2348 -2.1394 32 1 3.9329 0.3072 -1.2498 33 1 3.7175 -2.4694 -0.0003 34 1 5.1705 -1.4408 -0.0005 35 1 3.9335 0.3074 1.2487 36 1 3.9347 -1.2337 2.1388 37 1 2.5688 -3.4389 -0.0072 38 1 3.4698 -2.9291 1.4408 39 1 2.1287 -4.0899 1.5899 40 1 -0.0852 -4.1131 0.2642 41 1 0.2062 -4.4102 1.9949 42 1 -2.2528 -3.4615 -0.4969 43 1 -3.5181 -3.0335 0.6799 44 1 -2.0997 -1.9782 0.4750 45 1 -2.2055 -5.6112 0.6287 46 1 -1.6317 -5.7081 2.3110 47 1 -4.2661 -8.2745 2.1196 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083217222.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:08 Heat of formation + Delta-G solvation = -18.990149 kcal Electronic energy + Delta-G solvation = -24155.656482 eV Core-core repulsion = 20952.998892 eV Total energy + Delta-G solvation = -3202.657590 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.98576 -39.40501 -37.51323 -35.64146 -34.63099 -33.62201 -31.54786 -29.74616 -28.68466 -28.36333 -26.66760 -25.90914 -23.40241 -22.54011 -22.20423 -20.99379 -19.65112 -18.55924 -17.96176 -17.55324 -16.67067 -16.60780 -16.11234 -15.75156 -15.41966 -15.36236 -15.06285 -14.78123 -14.35474 -14.15913 -14.08099 -13.72650 -13.45530 -13.22373 -13.14274 -12.83866 -12.77830 -12.74981 -12.66529 -12.55629 -12.50595 -12.22594 -12.13962 -11.90011 -11.57495 -11.40465 -11.07075 -11.01902 -10.83122 -10.62582 -10.29613 -9.35532 -9.00639 -8.21612 -6.30556 1.40133 1.40882 1.54965 1.74083 2.03567 2.41151 3.10918 3.35195 3.64175 3.77714 3.87858 3.92509 4.19632 4.24084 4.28105 4.34155 4.40943 4.51652 4.55023 4.56891 4.57810 4.62364 4.67498 4.75938 4.78311 4.87858 4.93876 4.99285 5.09113 5.11532 5.14396 5.18467 5.24297 5.27515 5.34326 5.40683 5.43845 5.49468 5.61542 5.64527 5.84279 6.01632 6.28329 6.39961 6.63636 6.84329 7.36977 7.39275 8.89577 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034229 B = 0.003818 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.824540 B = 7332.208944 C = 7650.674877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.096 4.096 3 H 0.085 0.915 4 C -0.109 4.109 5 C -0.112 4.112 6 C -0.159 4.159 7 C -0.117 4.117 8 C 0.152 3.848 9 H 0.057 0.943 10 N -0.605 5.605 11 C 0.059 3.941 12 C 0.512 3.488 13 O -0.539 6.539 14 C 0.038 3.962 15 N -0.538 5.538 16 C 0.044 3.956 17 C 0.210 3.790 18 C -0.526 4.526 19 H 0.056 0.944 20 C 0.006 3.994 21 N -0.931 5.931 22 Si 0.967 3.033 23 H -0.269 1.269 24 H -0.276 1.276 25 H -0.275 1.275 26 H 0.051 0.949 27 H 0.035 0.965 28 H 0.040 0.960 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.102 0.898 42 H 0.008 0.992 43 H 0.051 0.949 44 H 0.077 0.923 45 H -0.031 1.031 46 H 0.012 0.988 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.974 12.428 -5.972 24.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.115 4.115 3 H 0.103 0.897 4 C -0.147 4.147 5 C -0.149 4.149 6 C -0.196 4.196 7 C -0.154 4.154 8 C 0.049 3.951 9 H 0.075 0.925 10 N -0.339 5.339 11 C -0.083 4.083 12 C 0.301 3.699 13 O -0.416 6.416 14 C -0.093 4.093 15 N -0.263 5.263 16 C -0.104 4.104 17 C 0.084 3.916 18 C -0.564 4.564 19 H 0.074 0.926 20 C -0.192 4.192 21 N -0.571 5.571 22 Si 0.792 3.208 23 H -0.194 1.194 24 H -0.201 1.201 25 H -0.201 1.201 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.129 0.871 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.120 0.880 42 H 0.026 0.974 43 H 0.070 0.930 44 H 0.095 0.905 45 H -0.013 1.013 46 H 0.030 0.970 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 19.472 12.959 -5.368 23.998 hybrid contribution -1.128 -0.747 -0.492 1.439 sum 18.344 12.213 -5.860 22.803 Atomic orbital electron populations 1.22184 0.95931 1.00787 1.00358 1.21536 0.94881 0.99802 0.95270 0.89682 1.21515 0.96856 0.99800 0.96541 1.21476 0.93853 1.01152 0.98457 1.22526 1.01423 1.02325 0.93314 1.21774 0.91341 1.02859 0.99452 1.21115 0.95470 0.81299 0.97201 0.92514 1.47832 1.06250 1.07733 1.72128 1.22554 0.94950 0.88735 1.02013 1.20438 0.82289 0.90283 0.76929 1.90679 1.57679 1.46579 1.46678 1.22043 0.90740 0.94956 1.01540 1.61703 1.01618 1.16022 1.46910 1.22251 0.99158 0.98283 0.90710 1.19430 0.94993 0.83539 0.93663 1.21459 0.98069 0.92797 1.44060 0.92618 1.25831 1.02936 0.94862 0.95603 1.70061 1.38909 0.98049 1.50105 0.85367 0.79072 0.78277 0.78106 1.19357 1.20115 1.20082 0.93049 0.94553 0.94060 0.93395 0.92530 0.91451 0.91666 0.88181 0.90272 0.89402 0.90340 0.90900 0.87078 0.91494 0.92182 0.88025 0.97370 0.92963 0.90461 1.01335 0.97001 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 7.34 71.98 0.53 -3.36 16 2 C -0.10 -2.04 2.54 -10.79 -0.03 -2.06 16 3 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 4 C -0.11 -2.03 5.04 30.59 0.15 -1.87 16 5 C -0.11 -1.45 5.92 30.59 0.18 -1.27 16 6 C -0.16 -1.75 5.13 30.60 0.16 -1.59 16 7 C -0.12 -1.52 4.94 30.61 0.15 -1.37 16 8 C 0.15 3.18 2.60 45.01 0.12 3.30 16 9 H 0.06 1.44 7.99 -2.39 -0.02 1.42 16 10 N -0.60 -14.35 2.23 -827.71 -1.85 -16.19 16 11 C 0.06 0.96 7.86 127.77 1.00 1.96 16 12 C 0.51 17.00 5.68 87.66 0.50 17.50 16 13 O -0.54 -21.38 9.95 -3.03 -0.03 -21.41 16 14 C 0.04 1.40 4.17 85.56 0.36 1.75 16 15 N -0.54 -25.20 4.49 -931.65 -4.18 -29.38 16 16 C 0.04 1.96 9.03 127.69 1.15 3.11 16 17 C 0.21 11.45 4.72 85.56 0.40 11.85 16 18 C -0.53 -31.01 8.46 25.60 0.22 -30.79 16 19 H 0.06 3.33 7.12 -2.91 -0.02 3.31 16 20 C 0.01 0.34 5.46 84.66 0.46 0.80 16 21 N -0.93 -56.10 13.29 21.45 0.28 -55.81 16 22 Si 0.97 45.49 29.54 68.60 2.03 47.52 16 23 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 26 H 0.05 1.71 6.67 -2.39 -0.02 1.69 16 27 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.04 1.37 4.50 -2.39 -0.01 1.35 16 29 H 0.05 1.03 7.05 -2.39 -0.02 1.01 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 1.10 3.09 -4.32 -0.01 1.09 16 34 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.08 0.91 7.31 -2.39 -0.02 0.89 16 37 H 0.07 1.04 6.46 -2.39 -0.02 1.03 16 38 H 0.11 1.24 4.78 -2.39 -0.01 1.23 16 39 H 0.07 1.15 6.52 -2.39 -0.02 1.14 16 40 H 0.06 2.03 8.12 -2.39 -0.02 2.01 16 41 H 0.10 3.48 7.00 -2.39 -0.02 3.46 16 42 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.05 2.49 6.76 -2.39 -0.02 2.47 16 44 H 0.08 3.27 5.03 -2.39 -0.01 3.26 16 45 H -0.03 -1.79 8.12 -2.38 -0.02 -1.81 16 46 H 0.01 0.68 7.93 -2.38 -0.02 0.66 16 47 H 0.27 14.95 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -69.87 337.60 2.54 -67.33 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.94 Total: 9.98 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 5.36 Total: -2.03 kcal Atomic # 7 Polarization: -95.64 SS G_CDS: -5.74 Total: -101.39 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.03 Total: -21.41 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -69.87 2.54 -67.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083217222.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.335 kcal (2) G-P(sol) polarization free energy of solvation -69.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds