Wall clock time and date at job start Tue Mar 31 2020 06:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46652 * 2 1 4 4 C 1.53000 * 109.46886 * 119.99655 * 2 1 3 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47127 * 300.00449 * 5 4 2 7 7 C 1.52997 * 109.47164 * 59.99836 * 6 5 4 8 8 C 1.52996 * 109.47302 * 239.99872 * 2 1 3 9 9 H 1.08992 * 109.47554 * 299.99692 * 8 2 1 10 10 N 1.46505 * 109.46998 * 60.00069 * 8 2 1 11 11 C 1.46498 * 119.99909 * 60.00074 * 10 8 2 12 12 C 1.34769 * 119.99841 * 239.99779 * 10 8 2 13 13 O 1.21289 * 120.00300 * 359.97438 * 12 10 8 14 14 C 1.50700 * 120.00331 * 180.02562 * 12 10 8 15 15 N 1.46893 * 109.47892 * 180.02562 * 14 12 10 16 16 C 1.46901 * 111.00413 * 66.03915 * 15 14 12 17 17 C 1.46897 * 111.00562 * 190.00133 * 15 14 12 18 18 C 1.50697 * 109.47424 * 169.99532 * 17 15 14 19 19 H 1.08003 * 119.99767 * 0.02562 * 18 17 15 20 20 C 1.37878 * 120.00200 * 179.97438 * 18 17 15 21 21 N 1.31512 * 119.99830 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99974 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47155 * 90.00476 * 22 20 18 24 24 H 1.48501 * 109.47015 * 210.00249 * 22 20 18 25 25 H 1.48490 * 109.47355 * 330.00241 * 22 20 18 26 26 H 1.09002 * 109.47508 * 299.99916 * 1 2 3 27 27 H 1.09000 * 109.47437 * 60.00514 * 1 2 3 28 28 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 30 30 H 1.09001 * 109.47194 * 60.00677 * 4 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 32 32 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 33 33 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 34 34 H 1.09000 * 109.47050 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47045 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47375 * 59.99966 * 7 6 5 37 37 H 1.09001 * 109.47636 * 90.00105 * 11 10 8 38 38 H 1.09008 * 109.46827 * 209.99958 * 11 10 8 39 39 H 1.08998 * 109.47013 * 329.99480 * 11 10 8 40 40 H 1.09004 * 109.46716 * 300.00104 * 14 12 10 41 41 H 1.09002 * 109.47040 * 59.99392 * 14 12 10 42 42 H 1.08997 * 109.46733 * 60.00226 * 16 15 14 43 43 H 1.08998 * 109.47247 * 180.02562 * 16 15 14 44 44 H 1.09004 * 109.46974 * 300.01086 * 16 15 14 45 45 H 1.08998 * 109.46805 * 289.99880 * 17 15 14 46 46 H 1.08995 * 109.47169 * 49.99323 * 17 15 14 47 47 H 0.97000 * 120.00542 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7207 1.2497 6 6 4.0805 -1.4415 0.0004 7 6 3.5705 -0.7203 -1.2488 8 6 2.0400 -0.7213 -1.2492 9 1 1.6768 -1.7489 -1.2492 10 7 1.5517 -0.0306 -2.4454 11 6 1.9056 1.3719 -2.6772 12 6 0.7770 -0.6856 -3.3325 13 8 0.4844 -1.8470 -3.1409 14 6 0.2751 0.0245 -4.5633 15 7 -0.5416 -0.8985 -5.3626 16 6 -1.7701 -1.2689 -4.6474 17 6 -0.8514 -0.3232 -6.6782 18 6 -1.4721 -1.3799 -7.5552 19 1 -1.6219 -2.3789 -7.1732 20 6 -1.8498 -1.0710 -8.8448 21 7 -1.6679 0.1456 -9.3097 22 14 -2.6185 -2.3811 -9.9320 23 1 -4.0935 -2.3637 -9.7605 24 1 -2.2820 -2.1060 -11.3519 25 1 -2.0913 -3.7151 -9.5478 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6765 -0.2074 2.1393 30 1 1.6767 -1.7489 1.2493 31 1 3.9330 0.3071 1.2498 32 1 3.9333 -1.2348 2.1394 33 1 3.7176 -2.4694 0.0002 34 1 5.1705 -1.4408 0.0004 35 1 3.9339 -1.2342 -2.1388 36 1 3.9334 0.3075 -1.2486 37 1 2.8325 1.4232 -3.2485 38 1 1.1071 1.8606 -3.2356 39 1 2.0405 1.8756 -1.7200 40 1 -0.3304 0.8811 -4.2670 41 1 1.1231 0.3668 -5.1565 42 1 -2.3553 -0.3725 -4.4424 43 1 -2.3557 -1.9531 -5.2614 44 1 -1.5105 -1.7561 -3.7075 45 1 -1.5498 0.5049 -6.5572 46 1 0.0661 0.0402 -7.1411 47 1 -1.9332 0.3629 -10.2170 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083217224.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:12 Heat of formation + Delta-G solvation = -45.325464 kcal Electronic energy + Delta-G solvation = -23432.169061 eV Core-core repulsion = 20228.369487 eV Total energy + Delta-G solvation = -3203.799575 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.32994 -38.35821 -35.88843 -34.89089 -32.69692 -32.46945 -30.46202 -28.05773 -26.99797 -26.88758 -26.07501 -24.13342 -22.56577 -21.51413 -20.57467 -19.75899 -18.83438 -16.84885 -16.44990 -15.99102 -15.61944 -14.78021 -14.75311 -14.64607 -14.27090 -14.10388 -13.90235 -13.47423 -13.19730 -12.98491 -12.83926 -12.51181 -12.39659 -12.22919 -12.06199 -11.75947 -11.74965 -11.40149 -11.30479 -11.08852 -10.99686 -10.78906 -10.68407 -10.67864 -10.48887 -10.48119 -10.34059 -9.92624 -9.38955 -8.99472 -8.46549 -8.40756 -7.18132 -6.00421 -4.00745 3.01032 3.08726 3.35179 3.40865 3.47170 4.39708 4.46287 4.53689 4.64258 4.82137 4.94614 4.99246 5.07150 5.15412 5.21949 5.25683 5.27407 5.30676 5.35944 5.44399 5.49437 5.60153 5.65605 5.74458 5.80786 5.82491 5.83520 5.86760 5.92980 5.95355 5.99079 6.12079 6.17232 6.30125 6.35996 6.44421 6.70626 6.94500 7.26171 7.33421 7.54126 7.84310 8.08644 8.22687 8.52472 8.62451 9.07465 9.63254 11.10728 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035765 B = 0.003311 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.698254 B = 8454.642434 C = 8495.677566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.070 0.930 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.117 4.117 7 C -0.127 4.127 8 C 0.146 3.854 9 H 0.100 0.900 10 N -0.619 5.619 11 C 0.077 3.923 12 C 0.517 3.483 13 O -0.518 6.518 14 C 0.040 3.960 15 N -0.524 5.524 16 C 0.034 3.966 17 C 0.193 3.807 18 C -0.504 4.504 19 H 0.065 0.935 20 C 0.054 3.946 21 N -0.901 5.901 22 Si 0.899 3.101 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.272 1.272 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.095 0.905 42 H 0.003 0.997 43 H 0.073 0.927 44 H 0.064 0.936 45 H -0.009 1.009 46 H 0.030 0.970 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.176 3.837 21.237 23.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.089 0.911 4 C -0.150 4.150 5 C -0.157 4.157 6 C -0.155 4.155 7 C -0.165 4.165 8 C 0.042 3.958 9 H 0.118 0.882 10 N -0.355 5.355 11 C -0.066 4.066 12 C 0.306 3.694 13 O -0.392 6.392 14 C -0.092 4.092 15 N -0.249 5.249 16 C -0.114 4.114 17 C 0.069 3.931 18 C -0.543 4.543 19 H 0.083 0.917 20 C -0.147 4.147 21 N -0.541 5.541 22 Si 0.727 3.273 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.197 1.197 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.113 0.887 42 H 0.022 0.978 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.009 0.991 46 H 0.048 0.952 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.241 2.878 21.056 23.591 hybrid contribution -0.803 0.405 -0.638 1.103 sum 9.438 3.283 20.418 22.732 Atomic orbital electron populations 1.21759 0.94753 1.02191 1.01380 1.21451 0.96186 0.99725 0.94441 0.91130 1.21569 0.95370 1.00980 0.97077 1.21557 0.95690 1.00682 0.97813 1.21502 1.00223 0.99679 0.94099 1.21882 0.95198 1.01048 0.98393 1.21052 0.93134 0.98140 0.83467 0.88201 1.47947 1.52188 1.12332 1.23006 1.21746 1.01128 0.81954 1.01790 1.20989 0.77381 0.87150 0.83885 1.90626 1.56255 1.16702 1.75629 1.21978 0.99602 0.94478 0.93115 1.61836 1.18705 1.40443 1.03870 1.22347 0.91144 0.99012 0.98887 1.19776 0.95839 0.94250 0.83275 1.21168 1.39024 0.97201 0.96880 0.91689 1.24980 0.96160 0.95587 0.97926 1.69954 1.48333 1.18955 1.16857 0.86477 0.79348 0.82027 0.79486 1.20747 1.21277 1.19689 0.92989 0.92600 0.92539 0.91832 0.91695 0.92061 0.92015 0.91717 0.91834 0.91501 0.91814 0.92695 0.90881 0.91348 0.93310 0.88690 0.97840 0.90810 0.91752 0.99079 0.95232 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.04 37.16 0.34 -1.17 16 2 C -0.10 -0.92 2.09 -90.62 -0.19 -1.11 16 3 H 0.07 0.61 6.66 -51.93 -0.35 0.26 16 4 C -0.11 -0.90 5.20 -26.73 -0.14 -1.04 16 5 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 6 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 7 C -0.13 -1.23 5.20 -26.71 -0.14 -1.37 16 8 C 0.15 1.67 1.97 -67.90 -0.13 1.54 16 9 H 0.10 1.42 6.90 -51.93 -0.36 1.06 16 10 N -0.62 -7.96 2.00 -173.91 -0.35 -8.31 16 11 C 0.08 0.74 9.30 59.85 0.56 1.30 16 12 C 0.52 8.91 7.40 -10.99 -0.08 8.83 16 13 O -0.52 -10.75 13.64 5.55 0.08 -10.67 16 14 C 0.04 0.73 4.00 -4.98 -0.02 0.71 16 15 N -0.52 -12.15 4.49 -245.83 -1.10 -13.26 16 16 C 0.03 0.75 9.03 60.07 0.54 1.30 16 17 C 0.19 5.15 4.72 -4.98 -0.02 5.13 16 18 C -0.50 -14.61 8.46 -34.44 -0.29 -14.90 16 19 H 0.06 1.90 7.12 -52.48 -0.37 1.52 16 20 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 22 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.66 7.60 -51.93 -0.39 0.27 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.55 7.67 -51.93 -0.40 0.15 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.70 6.44 -51.92 -0.33 0.37 16 39 H 0.07 0.52 6.43 -51.93 -0.33 0.19 16 40 H 0.05 0.82 7.38 -51.93 -0.38 0.44 16 41 H 0.10 1.65 7.90 -51.93 -0.41 1.24 16 42 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 43 H 0.07 1.71 6.76 -51.93 -0.35 1.36 16 44 H 0.06 1.36 5.88 -51.93 -0.31 1.05 16 45 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 46 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 358.65 15.07 5.40 5.40 Total: -1.00 -32.44 358.65 -8.86 -41.30 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -8.61 Total: -3.88 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 0.00 Total: -1.44 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.71 Total: -47.81 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.44 -8.86 -41.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083217224.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.022 kcal (2) G-P(sol) polarization free energy of solvation -32.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds