Wall clock time and date at job start Tue Mar 31 2020 06:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46652 * 2 1 4 4 C 1.53000 * 109.46886 * 119.99655 * 2 1 3 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47127 * 300.00449 * 5 4 2 7 7 C 1.52997 * 109.47164 * 59.99836 * 6 5 4 8 8 C 1.52996 * 109.47302 * 239.99872 * 2 1 3 9 9 H 1.08992 * 109.47554 * 299.99692 * 8 2 1 10 10 N 1.46505 * 109.46998 * 60.00069 * 8 2 1 11 11 C 1.46498 * 119.99909 * 60.00074 * 10 8 2 12 12 C 1.34769 * 119.99841 * 239.99779 * 10 8 2 13 13 O 1.21289 * 120.00300 * 359.97438 * 12 10 8 14 14 C 1.50700 * 120.00331 * 180.02562 * 12 10 8 15 15 N 1.46893 * 109.47892 * 180.02562 * 14 12 10 16 16 C 1.46901 * 111.00413 * 66.03915 * 15 14 12 17 17 C 1.46897 * 111.00562 * 190.00133 * 15 14 12 18 18 C 1.50697 * 109.47424 * 169.99532 * 17 15 14 19 19 H 1.08003 * 119.99767 * 0.02562 * 18 17 15 20 20 C 1.37878 * 120.00200 * 179.97438 * 18 17 15 21 21 N 1.31512 * 119.99830 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99974 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47155 * 90.00476 * 22 20 18 24 24 H 1.48501 * 109.47015 * 210.00249 * 22 20 18 25 25 H 1.48490 * 109.47355 * 330.00241 * 22 20 18 26 26 H 1.09002 * 109.47508 * 299.99916 * 1 2 3 27 27 H 1.09000 * 109.47437 * 60.00514 * 1 2 3 28 28 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 30 30 H 1.09001 * 109.47194 * 60.00677 * 4 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 32 32 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 33 33 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 34 34 H 1.09000 * 109.47050 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47045 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47375 * 59.99966 * 7 6 5 37 37 H 1.09001 * 109.47636 * 90.00105 * 11 10 8 38 38 H 1.09008 * 109.46827 * 209.99958 * 11 10 8 39 39 H 1.08998 * 109.47013 * 329.99480 * 11 10 8 40 40 H 1.09004 * 109.46716 * 300.00104 * 14 12 10 41 41 H 1.09002 * 109.47040 * 59.99392 * 14 12 10 42 42 H 1.08997 * 109.46733 * 60.00226 * 16 15 14 43 43 H 1.08998 * 109.47247 * 180.02562 * 16 15 14 44 44 H 1.09004 * 109.46974 * 300.01086 * 16 15 14 45 45 H 1.08998 * 109.46805 * 289.99880 * 17 15 14 46 46 H 1.08995 * 109.47169 * 49.99323 * 17 15 14 47 47 H 0.97000 * 120.00542 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7207 1.2497 6 6 4.0805 -1.4415 0.0004 7 6 3.5705 -0.7203 -1.2488 8 6 2.0400 -0.7213 -1.2492 9 1 1.6768 -1.7489 -1.2492 10 7 1.5517 -0.0306 -2.4454 11 6 1.9056 1.3719 -2.6772 12 6 0.7770 -0.6856 -3.3325 13 8 0.4844 -1.8470 -3.1409 14 6 0.2751 0.0245 -4.5633 15 7 -0.5416 -0.8985 -5.3626 16 6 -1.7701 -1.2689 -4.6474 17 6 -0.8514 -0.3232 -6.6782 18 6 -1.4721 -1.3799 -7.5552 19 1 -1.6219 -2.3789 -7.1732 20 6 -1.8498 -1.0710 -8.8448 21 7 -1.6679 0.1456 -9.3097 22 14 -2.6185 -2.3811 -9.9320 23 1 -4.0935 -2.3637 -9.7605 24 1 -2.2820 -2.1060 -11.3519 25 1 -2.0913 -3.7151 -9.5478 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6765 -0.2074 2.1393 30 1 1.6767 -1.7489 1.2493 31 1 3.9330 0.3071 1.2498 32 1 3.9333 -1.2348 2.1394 33 1 3.7176 -2.4694 0.0002 34 1 5.1705 -1.4408 0.0004 35 1 3.9339 -1.2342 -2.1388 36 1 3.9334 0.3075 -1.2486 37 1 2.8325 1.4232 -3.2485 38 1 1.1071 1.8606 -3.2356 39 1 2.0405 1.8756 -1.7200 40 1 -0.3304 0.8811 -4.2670 41 1 1.1231 0.3668 -5.1565 42 1 -2.3553 -0.3725 -4.4424 43 1 -2.3557 -1.9531 -5.2614 44 1 -1.5105 -1.7561 -3.7075 45 1 -1.5498 0.5049 -6.5572 46 1 0.0661 0.0402 -7.1411 47 1 -1.9332 0.3629 -10.2170 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083217224.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:11 Heat of formation + Delta-G solvation = -65.069619 kcal Electronic energy + Delta-G solvation = -23433.025232 eV Core-core repulsion = 20228.369487 eV Total energy + Delta-G solvation = -3204.655746 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.44817 -39.48075 -37.60235 -35.99616 -34.64281 -33.45376 -31.41924 -29.73261 -28.67591 -27.87341 -27.07724 -25.96607 -23.60798 -22.53697 -22.04400 -20.61679 -20.04536 -18.56377 -18.04492 -17.24027 -16.92827 -16.56550 -15.83674 -15.65704 -15.58035 -15.42568 -15.06966 -14.75871 -14.39472 -14.23379 -13.80843 -13.76077 -13.61151 -13.32963 -13.29479 -13.09787 -12.81656 -12.79696 -12.68075 -12.60778 -12.48810 -12.34514 -12.07047 -11.95466 -11.79102 -11.44906 -11.36895 -11.24828 -11.15440 -10.63632 -10.54269 -9.52884 -9.02397 -8.21976 -6.31120 1.40307 1.41587 1.53810 1.65727 1.96552 2.40807 3.10438 3.33632 3.55533 3.78766 3.80240 3.94018 4.17710 4.20106 4.23157 4.31075 4.37207 4.48486 4.50839 4.53143 4.55067 4.56849 4.64740 4.72389 4.76964 4.84506 4.92769 4.99096 5.07658 5.08415 5.13218 5.14925 5.19700 5.25260 5.26708 5.30030 5.34997 5.42476 5.56202 5.62587 5.71508 6.00328 6.26841 6.34229 6.60413 6.83279 7.27931 7.38132 8.89027 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035765 B = 0.003311 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.698254 B = 8454.642434 C = 8495.677566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 H 0.091 0.909 4 C -0.110 4.110 5 C -0.115 4.115 6 C -0.116 4.116 7 C -0.121 4.121 8 C 0.143 3.857 9 H 0.065 0.935 10 N -0.607 5.607 11 C 0.068 3.932 12 C 0.518 3.482 13 O -0.564 6.564 14 C 0.040 3.960 15 N -0.542 5.542 16 C 0.045 3.955 17 C 0.210 3.790 18 C -0.528 4.528 19 H 0.055 0.945 20 C 0.006 3.994 21 N -0.931 5.931 22 Si 0.968 3.032 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.034 0.966 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.012 0.988 43 H 0.054 0.946 44 H 0.070 0.930 45 H -0.029 1.029 46 H 0.012 0.988 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.169 4.875 22.642 25.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 H 0.109 0.891 4 C -0.148 4.148 5 C -0.152 4.152 6 C -0.154 4.154 7 C -0.159 4.159 8 C 0.040 3.960 9 H 0.083 0.917 10 N -0.340 5.340 11 C -0.074 4.074 12 C 0.306 3.694 13 O -0.442 6.442 14 C -0.091 4.091 15 N -0.267 5.267 16 C -0.103 4.103 17 C 0.084 3.916 18 C -0.566 4.566 19 H 0.074 0.926 20 C -0.192 4.192 21 N -0.571 5.571 22 Si 0.792 3.208 23 H -0.197 1.197 24 H -0.203 1.203 25 H -0.195 1.195 26 H 0.090 0.910 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.086 0.914 41 H 0.122 0.878 42 H 0.031 0.969 43 H 0.073 0.927 44 H 0.089 0.911 45 H -0.011 1.011 46 H 0.030 0.970 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.266 3.956 22.502 25.474 hybrid contribution -1.062 0.137 -1.010 1.472 sum 10.205 4.093 21.492 24.141 Atomic orbital electron populations 1.21742 0.95783 1.00847 1.01514 1.21426 0.95200 1.00585 0.93782 0.89097 1.21568 0.96221 1.00232 0.96802 1.21538 0.94700 1.01460 0.97509 1.21508 1.01023 0.98933 0.93934 1.21838 0.93432 1.02180 0.98468 1.21182 0.94474 0.96618 0.83757 0.91659 1.47944 1.50317 1.13517 1.22260 1.22041 1.01739 0.79835 1.03767 1.20729 0.77964 0.86575 0.84143 1.90607 1.58413 1.18473 1.76690 1.22024 0.99389 0.94291 0.93407 1.61684 1.19510 1.41899 1.03606 1.22207 0.90687 0.98952 0.98427 1.19425 0.94147 0.93074 0.84905 1.21435 1.39920 0.97334 0.97930 0.92633 1.25838 0.96355 0.97845 0.99195 1.70053 1.48859 1.20692 1.17478 0.85408 0.78711 0.79034 0.77631 1.19686 1.20264 1.19478 0.91044 0.94181 0.94670 0.90203 0.93025 0.90642 0.90814 0.93048 0.90445 0.93460 0.89829 0.91344 0.90759 0.88476 0.91435 0.87843 0.96927 0.92725 0.91113 1.01102 0.96956 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.04 71.98 0.65 -2.19 16 2 C -0.09 -1.52 2.09 -10.79 -0.02 -1.54 16 3 H 0.09 1.19 6.66 -2.39 -0.02 1.18 16 4 C -0.11 -1.52 5.20 30.59 0.16 -1.36 16 5 C -0.11 -1.29 5.92 30.60 0.18 -1.11 16 6 C -0.12 -1.67 5.92 30.60 0.18 -1.49 16 7 C -0.12 -2.15 5.20 30.61 0.16 -1.99 16 8 C 0.14 3.17 1.97 45.01 0.09 3.26 16 9 H 0.07 1.94 6.90 -2.39 -0.02 1.92 16 10 N -0.61 -15.11 2.00 -822.51 -1.64 -16.75 16 11 C 0.07 1.14 9.30 127.77 1.19 2.33 16 12 C 0.52 18.03 7.40 87.66 0.65 18.68 16 13 O -0.56 -24.26 13.64 -3.06 -0.04 -24.30 16 14 C 0.04 1.48 4.00 85.56 0.34 1.82 16 15 N -0.54 -25.80 4.49 -931.68 -4.18 -29.98 16 16 C 0.05 2.04 9.03 127.69 1.15 3.20 16 17 C 0.21 11.53 4.72 85.56 0.40 11.93 16 18 C -0.53 -31.27 8.46 25.60 0.22 -31.06 16 19 H 0.06 3.33 7.12 -2.91 -0.02 3.31 16 20 C 0.01 0.35 5.46 84.66 0.46 0.81 16 21 N -0.93 -56.14 13.29 21.45 0.28 -55.86 16 22 Si 0.97 45.55 29.54 68.60 2.03 47.58 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.04 0.92 7.60 -2.39 -0.02 0.90 16 28 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 1.17 7.67 -2.39 -0.02 1.15 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.07 1.26 6.44 -2.38 -0.02 1.25 16 39 H 0.10 1.11 6.43 -2.39 -0.02 1.09 16 40 H 0.07 2.24 7.38 -2.39 -0.02 2.23 16 41 H 0.10 3.59 7.90 -2.39 -0.02 3.57 16 42 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.05 2.61 6.76 -2.39 -0.02 2.60 16 44 H 0.07 3.09 5.88 -2.38 -0.01 3.07 16 45 H -0.03 -1.65 8.12 -2.39 -0.02 -1.67 16 46 H 0.01 0.71 7.93 -2.39 -0.02 0.69 16 47 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -71.69 358.65 3.17 -68.52 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 0.91 Total: 9.49 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 5.81 Total: 1.30 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -5.54 Total: -102.59 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.04 Total: -24.30 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -71.69 3.17 -68.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083217224.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.452 kcal (2) G-P(sol) polarization free energy of solvation -71.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds