Wall clock time and date at job start Tue Mar 31 2020 06:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46919 * 2 1 4 4 C 1.53001 * 109.47404 * 239.99614 * 2 1 3 5 5 C 1.52997 * 109.47048 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47145 * 60.00401 * 5 4 2 7 7 C 1.53001 * 109.46820 * 299.99738 * 6 5 4 8 8 C 1.52995 * 109.47404 * 60.00099 * 7 6 5 9 9 H 1.09000 * 109.47368 * 59.99383 * 8 7 6 10 10 N 1.46502 * 109.47349 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00062 * 60.00143 * 10 8 7 12 12 C 1.34779 * 119.99726 * 239.99897 * 10 8 7 13 13 O 1.21279 * 120.00410 * 359.97438 * 12 10 8 14 14 C 1.50703 * 119.99541 * 179.97438 * 12 10 8 15 15 N 1.46902 * 109.46924 * 180.02562 * 14 12 10 16 16 C 1.46895 * 111.00088 * 66.04397 * 15 14 12 17 17 C 1.46900 * 111.00184 * 190.00169 * 15 14 12 18 18 C 1.50696 * 109.47105 * 169.99718 * 17 15 14 19 19 H 1.07996 * 120.00475 * 0.02562 * 18 17 15 20 20 C 1.37879 * 120.00024 * 179.97438 * 18 17 15 21 21 N 1.31519 * 119.99943 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00464 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46646 * 60.00207 * 22 20 18 24 24 H 1.48488 * 109.47299 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46930 * 300.00824 * 22 20 18 26 26 H 1.09000 * 109.47517 * 300.00478 * 1 2 3 27 27 H 1.08997 * 109.47112 * 60.00276 * 1 2 3 28 28 H 1.09009 * 109.47190 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46660 * 300.00018 * 4 2 1 30 30 H 1.08997 * 109.46897 * 59.99978 * 4 2 1 31 31 H 1.09000 * 109.47162 * 179.97438 * 5 4 2 32 32 H 1.09003 * 109.47182 * 300.00329 * 5 4 2 33 33 H 1.08996 * 109.47436 * 59.99676 * 6 5 4 34 34 H 1.08996 * 109.46922 * 180.02562 * 6 5 4 35 35 H 1.09003 * 109.47398 * 300.00006 * 7 6 5 36 36 H 1.09000 * 109.47309 * 180.02562 * 7 6 5 37 37 H 1.09002 * 109.47391 * 89.99876 * 11 10 8 38 38 H 1.09001 * 109.46813 * 329.99933 * 11 10 8 39 39 H 1.09004 * 109.47041 * 210.00060 * 11 10 8 40 40 H 1.08996 * 109.47057 * 299.99739 * 14 12 10 41 41 H 1.08996 * 109.47084 * 60.00703 * 14 12 10 42 42 H 1.09004 * 109.47144 * 59.99928 * 16 15 14 43 43 H 1.09000 * 109.47256 * 180.02562 * 16 15 14 44 44 H 1.09004 * 109.47371 * 300.00001 * 16 15 14 45 45 H 1.08999 * 109.46737 * 290.00105 * 17 15 14 46 46 H 1.08998 * 109.46879 * 49.99665 * 17 15 14 47 47 H 0.96994 * 120.00041 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2494 6 6 4.0805 -1.4416 -0.0001 7 6 3.5704 -0.7203 1.2491 8 6 2.0405 -0.7208 1.2494 9 1 1.6775 -1.7486 1.2496 10 7 1.5521 -0.0296 2.4452 11 6 1.9055 1.3733 2.6760 12 6 0.7776 -0.6843 3.3329 13 8 0.4846 -1.8455 3.1416 14 6 0.2757 0.0266 4.5633 15 7 -0.5396 -0.8967 5.3639 16 6 0.2795 -1.9909 5.9021 17 6 -1.2384 -0.1831 6.4411 18 6 -2.2454 -1.1030 7.0821 19 1 -2.3550 -2.1164 6.7253 20 6 -3.0262 -0.6511 8.1248 21 7 -2.8924 0.5829 8.5597 22 14 -4.2739 -1.7913 8.9199 23 1 -3.5750 -2.9750 9.4818 24 1 -4.9804 -1.0700 10.0087 25 1 -5.2585 -2.2355 7.9007 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6767 -1.7490 -1.2490 30 1 1.6767 -0.2075 -2.1392 31 1 3.9334 -1.2350 -2.1391 32 1 3.9329 0.3071 -1.2496 33 1 3.7176 -2.4694 0.0002 34 1 5.1705 -1.4408 -0.0001 35 1 3.9334 0.3076 1.2488 36 1 3.9344 -1.2335 2.1391 37 1 1.1539 2.0172 2.2194 38 1 2.8793 1.5803 2.2324 39 1 1.9462 1.5660 3.7481 40 1 1.1237 0.3694 5.1561 41 1 -0.3301 0.8827 4.2665 42 1 1.0650 -1.5790 6.5357 43 1 -0.3488 -2.6597 6.4902 44 1 0.7301 -2.5461 5.0794 45 1 -0.5159 0.1427 7.1894 46 1 -1.7510 0.6858 6.0284 47 1 -3.4413 0.9007 9.2935 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083217226.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:14 Heat of formation + Delta-G solvation = -45.387935 kcal Electronic energy + Delta-G solvation = -23421.010658 eV Core-core repulsion = 20217.208375 eV Total energy + Delta-G solvation = -3203.802284 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.32477 -38.35633 -35.88712 -34.89109 -32.68401 -32.46591 -30.46170 -28.05086 -27.00124 -26.89534 -26.04185 -24.14189 -22.54091 -21.51007 -20.57317 -19.74772 -18.83766 -16.84791 -16.44321 -15.96783 -15.63111 -14.79896 -14.74115 -14.58452 -14.36707 -14.08659 -13.86825 -13.54865 -13.15434 -12.97827 -12.82272 -12.49185 -12.34877 -12.21385 -12.05013 -11.76309 -11.71892 -11.37986 -11.30197 -11.07883 -10.99899 -10.80918 -10.68663 -10.66332 -10.52277 -10.39643 -10.36585 -9.92555 -9.40121 -9.00017 -8.46784 -8.40068 -7.18202 -6.00229 -4.00662 3.01040 3.08847 3.37513 3.40372 3.44947 4.40314 4.46276 4.54642 4.64746 4.82544 4.95113 4.98711 5.08098 5.17075 5.23680 5.23890 5.26244 5.33720 5.36021 5.42565 5.51163 5.64111 5.65632 5.76319 5.81531 5.82752 5.84687 5.86856 5.92921 5.95789 6.01789 6.12836 6.20936 6.34261 6.36046 6.44536 6.70766 6.94658 7.26201 7.33532 7.54161 7.84137 8.08729 8.22754 8.52549 8.62476 9.07246 9.63265 11.10883 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034973 B = 0.003325 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.430683 B = 8418.462878 C = 8443.288225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 H 0.069 0.931 4 C -0.113 4.113 5 C -0.120 4.120 6 C -0.116 4.116 7 C -0.128 4.128 8 C 0.145 3.855 9 H 0.100 0.900 10 N -0.620 5.620 11 C 0.077 3.923 12 C 0.518 3.482 13 O -0.518 6.518 14 C 0.040 3.960 15 N -0.524 5.524 16 C 0.034 3.966 17 C 0.194 3.806 18 C -0.505 4.505 19 H 0.064 0.936 20 C 0.055 3.945 21 N -0.901 5.901 22 Si 0.900 3.100 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.276 1.276 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.049 0.951 41 H 0.095 0.905 42 H 0.003 0.997 43 H 0.073 0.927 44 H 0.064 0.936 45 H -0.009 1.009 46 H 0.030 0.970 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.704 2.234 -18.432 23.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.088 0.912 4 C -0.151 4.151 5 C -0.157 4.157 6 C -0.155 4.155 7 C -0.166 4.166 8 C 0.042 3.958 9 H 0.118 0.882 10 N -0.355 5.355 11 C -0.066 4.066 12 C 0.306 3.694 13 O -0.392 6.392 14 C -0.092 4.092 15 N -0.248 5.248 16 C -0.114 4.114 17 C 0.069 3.931 18 C -0.544 4.544 19 H 0.083 0.917 20 C -0.146 4.146 21 N -0.541 5.541 22 Si 0.727 3.273 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.201 1.201 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.113 0.887 42 H 0.022 0.978 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.009 0.991 46 H 0.048 0.952 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.084 1.521 -18.665 23.432 hybrid contribution -0.051 0.126 1.085 1.093 sum 14.034 1.647 -17.580 22.555 Atomic orbital electron populations 1.21762 0.94581 1.02284 1.01495 1.21440 0.96320 0.99620 0.94276 0.91211 1.21577 0.95274 1.01011 0.97192 1.21558 0.95775 1.00655 0.97753 1.21495 1.00165 0.99683 0.94112 1.21885 0.95342 1.01008 0.98367 1.21047 0.92947 0.98180 0.83635 0.88208 1.47949 1.52093 1.12370 1.23069 1.21750 1.00620 0.81950 1.02319 1.20989 0.77010 0.87138 0.84262 1.90623 1.56012 1.16832 1.75736 1.21979 0.97433 0.96593 0.93178 1.61844 1.26700 1.10505 1.25795 1.22349 0.95544 0.95169 0.98351 1.19771 0.92713 0.94040 0.86575 1.21129 1.19026 0.98886 1.15318 0.91741 1.24980 0.97469 0.95275 0.96901 1.69946 1.40745 1.15748 1.27675 0.86532 0.81355 0.80594 0.78784 1.20249 1.21391 1.20112 0.92407 0.93012 0.92512 0.91698 0.91805 0.92018 0.92060 0.91716 0.91866 0.91765 0.91641 0.92706 0.91343 0.90867 0.93290 0.88704 0.97832 0.90797 0.91762 0.99079 0.95243 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.04 37.16 0.34 -1.28 16 2 C -0.10 -0.94 2.11 -90.62 -0.19 -1.13 16 3 H 0.07 0.62 7.67 -51.93 -0.40 0.23 16 4 C -0.11 -0.92 5.20 -26.73 -0.14 -1.06 16 5 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 6 C -0.12 -0.93 5.92 -26.73 -0.16 -1.08 16 7 C -0.13 -1.20 5.18 -26.73 -0.14 -1.33 16 8 C 0.15 1.67 1.97 -67.93 -0.13 1.53 16 9 H 0.10 1.42 6.90 -51.93 -0.36 1.06 16 10 N -0.62 -7.96 2.00 -173.93 -0.35 -8.31 16 11 C 0.08 0.74 9.30 59.85 0.56 1.30 16 12 C 0.52 8.91 7.40 -10.98 -0.08 8.83 16 13 O -0.52 -10.74 13.64 5.56 0.08 -10.67 16 14 C 0.04 0.73 4.00 -4.97 -0.02 0.71 16 15 N -0.52 -12.15 4.49 -245.83 -1.10 -13.25 16 16 C 0.03 0.75 9.03 60.06 0.54 1.29 16 17 C 0.19 5.16 4.72 -4.98 -0.02 5.14 16 18 C -0.50 -14.64 8.46 -34.44 -0.29 -14.93 16 19 H 0.06 1.88 7.12 -52.49 -0.37 1.50 16 20 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 21 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 22 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H 0.06 0.74 7.60 -51.93 -0.39 0.34 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.53 6.66 -51.93 -0.35 0.19 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.52 6.43 -51.93 -0.33 0.19 16 39 H 0.07 0.70 6.44 -51.93 -0.33 0.37 16 40 H 0.05 0.83 7.38 -51.93 -0.38 0.45 16 41 H 0.09 1.64 7.90 -51.93 -0.41 1.23 16 42 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 43 H 0.07 1.71 6.76 -51.93 -0.35 1.36 16 44 H 0.06 1.36 5.88 -51.93 -0.31 1.06 16 45 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 46 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 LS Contribution 358.64 15.07 5.40 5.40 Total: -1.00 -32.39 358.64 -8.86 -41.25 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -8.61 Total: -3.73 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: 0.00 Total: -1.55 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -0.71 Total: -47.82 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.39 -8.86 -41.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083217226.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.133 kcal (2) G-P(sol) polarization free energy of solvation -32.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds