Wall clock time and date at job start Tue Mar 31 2020 06:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47154 * 2 1 4 4 C 1.53007 * 109.46988 * 119.99683 * 2 1 3 5 5 C 1.52997 * 109.46988 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.47218 * 299.99929 * 5 4 2 7 7 C 1.52999 * 109.46941 * 59.99953 * 6 5 4 8 8 C 1.52997 * 109.47203 * 300.00056 * 7 6 5 9 9 H 1.09005 * 109.47001 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.47572 * 300.00225 * 8 7 6 11 11 C 1.46502 * 120.00023 * 110.89692 * 10 8 7 12 12 C 1.34778 * 119.99768 * 290.90128 * 10 8 7 13 13 O 1.21276 * 120.00339 * 359.72347 * 12 10 8 14 14 C 1.50698 * 119.99683 * 179.97438 * 12 10 8 15 15 N 1.46900 * 109.47060 * 179.72437 * 14 12 10 16 16 C 1.46900 * 111.00077 * 66.05033 * 15 14 12 17 17 C 1.46904 * 111.00192 * 190.00065 * 15 14 12 18 18 C 1.50702 * 109.47194 * 169.99976 * 17 15 14 19 19 H 1.08005 * 119.99732 * 0.02562 * 18 17 15 20 20 C 1.37871 * 119.99941 * 179.97438 * 18 17 15 21 21 N 1.31511 * 120.00342 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99931 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47078 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47052 * 120.00527 * 22 20 18 25 25 H 1.48499 * 109.47026 * 240.00084 * 22 20 18 26 26 H 1.08994 * 109.47606 * 153.57496 * 1 2 3 27 27 H 1.09009 * 109.46963 * 273.57964 * 1 2 3 28 28 H 1.09002 * 109.46877 * 33.57572 * 1 2 3 29 29 H 1.08991 * 109.46930 * 59.99682 * 4 2 1 30 30 H 1.08999 * 109.46899 * 299.99354 * 4 2 1 31 31 H 1.08999 * 109.47540 * 179.97438 * 5 4 2 32 32 H 1.09004 * 109.47728 * 59.99829 * 5 4 2 33 33 H 1.09004 * 109.46689 * 300.00536 * 6 5 4 34 34 H 1.08997 * 109.47311 * 180.02562 * 6 5 4 35 35 H 1.08999 * 109.46757 * 180.02562 * 7 6 5 36 36 H 1.08995 * 109.47226 * 60.00768 * 7 6 5 37 37 H 1.08999 * 109.46963 * 266.41234 * 11 10 8 38 38 H 1.08997 * 109.46977 * 26.41436 * 11 10 8 39 39 H 1.09002 * 109.46987 * 146.41338 * 11 10 8 40 40 H 1.08999 * 109.47498 * 299.72473 * 14 12 10 41 41 H 1.09002 * 109.47144 * 59.72886 * 14 12 10 42 42 H 1.08996 * 109.47652 * 59.99994 * 16 15 14 43 43 H 1.08996 * 109.47580 * 180.02562 * 16 15 14 44 44 H 1.09005 * 109.46910 * 300.00134 * 16 15 14 45 45 H 1.08996 * 109.47050 * 290.00005 * 17 15 14 46 46 H 1.08996 * 109.47067 * 49.99901 * 17 15 14 47 47 H 0.97003 * 120.00145 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5699 -0.7218 1.2490 6 6 4.0794 -1.4435 -0.0002 7 6 3.5694 -0.7223 -1.2495 8 6 2.0395 -0.7218 -1.2491 9 1 1.6761 -0.2076 -2.1390 10 7 1.5505 -2.1028 -1.2487 11 6 0.8797 -2.6420 -0.0632 12 6 1.7179 -2.8772 -2.3390 13 8 2.2688 -2.4293 -3.3222 14 6 1.2155 -4.2980 -2.3383 15 7 1.5116 -4.9226 -3.6345 16 6 2.9603 -5.0645 -3.8318 17 6 0.8336 -6.2198 -3.7609 18 6 0.9556 -6.7142 -5.1793 19 1 1.4842 -6.1240 -5.9133 20 6 0.3932 -7.9203 -5.5396 21 7 -0.2501 -8.6391 -4.6457 22 14 0.5450 -8.5335 -7.2976 23 1 1.3108 -7.5474 -8.1014 24 1 1.2551 -9.8377 -7.3074 25 1 -0.8099 -8.7033 -7.8813 26 1 -0.3634 -0.9202 -0.4573 27 1 -0.3633 0.0642 1.0257 28 1 -0.3633 0.8562 -0.5684 29 1 1.6766 -1.7488 1.2494 30 1 1.6767 -0.2072 2.1393 31 1 3.9333 -1.2351 2.1392 32 1 3.9338 0.3057 1.2487 33 1 3.7156 -2.4710 0.0001 34 1 5.1694 -1.4443 -0.0002 35 1 3.9320 -1.2368 -2.1394 36 1 3.9332 0.3051 -1.2498 37 1 1.6089 -3.1517 0.5665 38 1 0.4221 -1.8269 0.4975 39 1 0.1090 -3.3484 -0.3716 40 1 1.7093 -4.8577 -1.5440 41 1 0.1385 -4.3024 -2.1705 42 1 3.3756 -5.6883 -3.0403 43 1 3.1516 -5.5292 -4.7991 44 1 3.4290 -4.0808 -3.8027 45 1 1.2958 -6.9387 -3.0845 46 1 -0.2197 -6.1056 -3.5052 47 1 -0.6454 -9.4879 -4.8992 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083217229.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:17 Heat of formation + Delta-G solvation = -0.225881 kcal Electronic energy + Delta-G solvation = -23885.894087 eV Core-core repulsion = 20684.050177 eV Total energy + Delta-G solvation = -3201.843910 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.97018 -38.38096 -35.79237 -34.45685 -32.84228 -32.47692 -31.05043 -28.13167 -27.10062 -26.88170 -25.84878 -24.13196 -22.59715 -21.47414 -20.90497 -19.79191 -18.61795 -16.83677 -16.25269 -16.07697 -15.43505 -15.29682 -14.72806 -14.58705 -14.32490 -13.94349 -13.86233 -13.66251 -13.35168 -13.20633 -12.59856 -12.33726 -12.30137 -12.23778 -12.02838 -11.75585 -11.70892 -11.52080 -11.36208 -10.98681 -10.84910 -10.79830 -10.64037 -10.50670 -10.38436 -10.17192 -10.07029 -9.89636 -9.33923 -8.93957 -8.46140 -8.40648 -7.17639 -6.00426 -4.00640 3.04277 3.10918 3.34210 3.41357 3.48179 4.38052 4.46582 4.52767 4.55519 4.88489 4.96084 4.99632 5.10238 5.13966 5.22283 5.24783 5.30940 5.35647 5.37586 5.42187 5.50092 5.55605 5.61667 5.71791 5.76742 5.82535 5.86124 5.88894 5.91388 6.03880 6.09723 6.12033 6.19055 6.29653 6.37443 6.45909 6.76030 6.95183 7.26649 7.33959 7.56266 7.84911 8.08937 8.23124 8.53564 8.64394 9.07948 9.63488 11.10745 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033432 B = 0.003622 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.310689 B = 7728.790449 C = 7951.563637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.096 4.096 3 H 0.081 0.919 4 C -0.157 4.157 5 C -0.116 4.116 6 C -0.116 4.116 7 C -0.132 4.132 8 C 0.158 3.842 9 H 0.077 0.923 10 N -0.614 5.614 11 C 0.045 3.955 12 C 0.517 3.483 13 O -0.516 6.516 14 C 0.040 3.960 15 N -0.523 5.523 16 C 0.035 3.965 17 C 0.193 3.807 18 C -0.503 4.503 19 H 0.065 0.935 20 C 0.054 3.946 21 N -0.901 5.901 22 Si 0.898 3.102 23 H -0.271 1.271 24 H -0.285 1.285 25 H -0.284 1.284 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.107 0.893 39 H 0.068 0.932 40 H 0.048 0.952 41 H 0.094 0.906 42 H 0.003 0.997 43 H 0.073 0.927 44 H 0.064 0.936 45 H -0.009 1.009 46 H 0.029 0.971 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.882 16.777 15.465 23.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.115 4.115 3 H 0.099 0.901 4 C -0.194 4.194 5 C -0.153 4.153 6 C -0.154 4.154 7 C -0.171 4.171 8 C 0.055 3.945 9 H 0.095 0.905 10 N -0.351 5.351 11 C -0.097 4.097 12 C 0.305 3.695 13 O -0.390 6.390 14 C -0.092 4.092 15 N -0.248 5.248 16 C -0.114 4.114 17 C 0.068 3.932 18 C -0.542 4.542 19 H 0.084 0.916 20 C -0.147 4.147 21 N -0.541 5.541 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.210 1.210 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.124 0.876 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.112 0.888 42 H 0.021 0.979 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.009 0.991 46 H 0.047 0.953 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.901 17.151 14.554 22.830 hybrid contribution 0.296 -0.997 -0.110 1.046 sum 4.197 16.154 14.444 22.073 Atomic orbital electron populations 1.22211 0.94968 1.02999 1.02013 1.21355 0.95824 0.99725 0.94571 0.90097 1.22645 0.96199 1.03812 0.96748 1.21501 0.95645 1.00405 0.97794 1.21464 0.99802 0.99824 0.94288 1.21899 0.95283 1.00861 0.99045 1.20901 0.93698 0.82100 0.97824 0.90541 1.47910 1.59760 1.12561 1.14824 1.22750 0.97432 1.00587 0.88933 1.20928 0.78802 0.88096 0.81657 1.90623 1.41537 1.74108 1.32725 1.21975 1.01552 0.91477 0.94179 1.61850 1.09797 1.27114 1.26032 1.22343 0.88111 1.00017 1.00906 1.19783 0.93674 0.82429 0.97310 1.21207 1.34277 1.03635 0.95050 0.91639 1.24978 0.95368 0.96665 0.97646 1.69965 1.36732 1.13690 1.33707 0.86430 0.77786 0.78539 0.84639 1.19578 1.21143 1.21012 0.90772 0.92208 0.92571 0.88099 0.92134 0.92294 0.92463 0.91925 0.92416 0.90459 0.91610 0.92646 0.87553 0.91366 0.93397 0.88760 0.97869 0.90837 0.91744 0.99079 0.95256 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 8.19 37.16 0.30 -0.97 16 2 C -0.10 -0.80 2.47 -90.62 -0.22 -1.02 16 3 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.16 -1.18 4.53 -26.73 -0.12 -1.31 16 5 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 6 C -0.12 -1.18 5.77 -26.73 -0.15 -1.34 16 7 C -0.13 -1.52 5.37 -26.73 -0.14 -1.66 16 8 C 0.16 1.80 2.20 -67.93 -0.15 1.65 16 9 H 0.08 1.00 8.06 -51.93 -0.42 0.58 16 10 N -0.61 -7.75 1.94 -176.12 -0.34 -8.09 16 11 C 0.05 0.43 6.73 59.85 0.40 0.83 16 12 C 0.52 8.82 7.15 -10.99 -0.08 8.74 16 13 O -0.52 -10.58 13.04 5.56 0.07 -10.50 16 14 C 0.04 0.73 4.05 -4.98 -0.02 0.71 16 15 N -0.52 -12.10 4.49 -245.83 -1.10 -13.21 16 16 C 0.03 0.76 9.03 60.06 0.54 1.30 16 17 C 0.19 5.13 4.72 -4.97 -0.02 5.11 16 18 C -0.50 -14.56 8.46 -34.44 -0.29 -14.85 16 19 H 0.07 1.92 7.12 -52.48 -0.37 1.54 16 20 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 22 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 H 0.07 0.65 5.31 -51.93 -0.28 0.38 16 27 H 0.06 0.38 7.87 -51.92 -0.41 -0.03 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.10 0.76 3.15 -54.67 -0.17 0.59 16 30 H 0.06 0.39 8.11 -51.93 -0.42 -0.03 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.72 7.05 -51.93 -0.37 0.35 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 1.12 6.87 -51.93 -0.36 0.76 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.49 6.70 -51.93 -0.35 0.14 16 38 H 0.11 0.81 2.75 -51.93 -0.14 0.67 16 39 H 0.07 0.65 6.58 -51.93 -0.34 0.31 16 40 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 41 H 0.09 1.62 7.18 -51.93 -0.37 1.25 16 42 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 43 H 0.07 1.70 6.76 -51.93 -0.35 1.35 16 44 H 0.06 1.36 5.88 -51.93 -0.31 1.06 16 45 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 46 H 0.03 0.81 7.93 -51.93 -0.41 0.40 16 47 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 LS Contribution 342.50 15.07 5.16 5.16 Total: -1.00 -32.39 342.50 -8.71 -41.10 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -8.00 Total: -2.89 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -0.21 Total: -2.44 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.71 Total: -47.50 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.07 Total: -10.50 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.39 -8.71 -41.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083217229.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.874 kcal (2) G-P(sol) polarization free energy of solvation -32.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds