Wall clock time and date at job start Tue Mar 31 2020 06:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47154 * 2 1 4 4 C 1.53007 * 109.46988 * 119.99683 * 2 1 3 5 5 C 1.52997 * 109.46988 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.47218 * 299.99929 * 5 4 2 7 7 C 1.52999 * 109.46941 * 59.99953 * 6 5 4 8 8 C 1.52997 * 109.47203 * 300.00056 * 7 6 5 9 9 H 1.09005 * 109.47001 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.47572 * 300.00225 * 8 7 6 11 11 C 1.46502 * 120.00023 * 110.89692 * 10 8 7 12 12 C 1.34778 * 119.99768 * 290.90128 * 10 8 7 13 13 O 1.21276 * 120.00339 * 359.72347 * 12 10 8 14 14 C 1.50698 * 119.99683 * 179.97438 * 12 10 8 15 15 N 1.46900 * 109.47060 * 179.72437 * 14 12 10 16 16 C 1.46900 * 111.00077 * 66.05033 * 15 14 12 17 17 C 1.46904 * 111.00192 * 190.00065 * 15 14 12 18 18 C 1.50702 * 109.47194 * 169.99976 * 17 15 14 19 19 H 1.08005 * 119.99732 * 0.02562 * 18 17 15 20 20 C 1.37871 * 119.99941 * 179.97438 * 18 17 15 21 21 N 1.31511 * 120.00342 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99931 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47078 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47052 * 120.00527 * 22 20 18 25 25 H 1.48499 * 109.47026 * 240.00084 * 22 20 18 26 26 H 1.08994 * 109.47606 * 153.57496 * 1 2 3 27 27 H 1.09009 * 109.46963 * 273.57964 * 1 2 3 28 28 H 1.09002 * 109.46877 * 33.57572 * 1 2 3 29 29 H 1.08991 * 109.46930 * 59.99682 * 4 2 1 30 30 H 1.08999 * 109.46899 * 299.99354 * 4 2 1 31 31 H 1.08999 * 109.47540 * 179.97438 * 5 4 2 32 32 H 1.09004 * 109.47728 * 59.99829 * 5 4 2 33 33 H 1.09004 * 109.46689 * 300.00536 * 6 5 4 34 34 H 1.08997 * 109.47311 * 180.02562 * 6 5 4 35 35 H 1.08999 * 109.46757 * 180.02562 * 7 6 5 36 36 H 1.08995 * 109.47226 * 60.00768 * 7 6 5 37 37 H 1.08999 * 109.46963 * 266.41234 * 11 10 8 38 38 H 1.08997 * 109.46977 * 26.41436 * 11 10 8 39 39 H 1.09002 * 109.46987 * 146.41338 * 11 10 8 40 40 H 1.08999 * 109.47498 * 299.72473 * 14 12 10 41 41 H 1.09002 * 109.47144 * 59.72886 * 14 12 10 42 42 H 1.08996 * 109.47652 * 59.99994 * 16 15 14 43 43 H 1.08996 * 109.47580 * 180.02562 * 16 15 14 44 44 H 1.09005 * 109.46910 * 300.00134 * 16 15 14 45 45 H 1.08996 * 109.47050 * 290.00005 * 17 15 14 46 46 H 1.08996 * 109.47067 * 49.99901 * 17 15 14 47 47 H 0.97003 * 120.00145 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5699 -0.7218 1.2490 6 6 4.0794 -1.4435 -0.0002 7 6 3.5694 -0.7223 -1.2495 8 6 2.0395 -0.7218 -1.2491 9 1 1.6761 -0.2076 -2.1390 10 7 1.5505 -2.1028 -1.2487 11 6 0.8797 -2.6420 -0.0632 12 6 1.7179 -2.8772 -2.3390 13 8 2.2688 -2.4293 -3.3222 14 6 1.2155 -4.2980 -2.3383 15 7 1.5116 -4.9226 -3.6345 16 6 2.9603 -5.0645 -3.8318 17 6 0.8336 -6.2198 -3.7609 18 6 0.9556 -6.7142 -5.1793 19 1 1.4842 -6.1240 -5.9133 20 6 0.3932 -7.9203 -5.5396 21 7 -0.2501 -8.6391 -4.6457 22 14 0.5450 -8.5335 -7.2976 23 1 1.3108 -7.5474 -8.1014 24 1 1.2551 -9.8377 -7.3074 25 1 -0.8099 -8.7033 -7.8813 26 1 -0.3634 -0.9202 -0.4573 27 1 -0.3633 0.0642 1.0257 28 1 -0.3633 0.8562 -0.5684 29 1 1.6766 -1.7488 1.2494 30 1 1.6767 -0.2072 2.1393 31 1 3.9333 -1.2351 2.1392 32 1 3.9338 0.3057 1.2487 33 1 3.7156 -2.4710 0.0001 34 1 5.1694 -1.4443 -0.0002 35 1 3.9320 -1.2368 -2.1394 36 1 3.9332 0.3051 -1.2498 37 1 1.6089 -3.1517 0.5665 38 1 0.4221 -1.8269 0.4975 39 1 0.1090 -3.3484 -0.3716 40 1 1.7093 -4.8577 -1.5440 41 1 0.1385 -4.3024 -2.1705 42 1 3.3756 -5.6883 -3.0403 43 1 3.1516 -5.5292 -4.7991 44 1 3.4290 -4.0808 -3.8027 45 1 1.2958 -6.9387 -3.0845 46 1 -0.2197 -6.1056 -3.5052 47 1 -0.6454 -9.4879 -4.8992 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083217229.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:16 Heat of formation + Delta-G solvation = -20.417728 kcal Electronic energy + Delta-G solvation = -23886.769671 eV Core-core repulsion = 20684.050177 eV Total energy + Delta-G solvation = -3202.719494 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.96747 -39.65329 -37.54899 -35.45993 -34.63416 -33.66571 -31.93028 -29.86805 -28.71300 -27.89626 -26.82225 -25.94673 -23.66817 -22.54892 -22.15765 -20.92734 -19.81372 -18.55302 -17.93349 -17.15801 -16.67257 -16.58563 -16.11084 -16.01523 -15.43491 -15.33164 -15.17327 -14.70895 -14.55891 -14.33923 -14.05169 -13.67134 -13.39371 -13.26799 -13.13803 -13.00587 -12.83165 -12.77022 -12.62683 -12.58063 -12.38877 -12.30741 -12.27590 -11.98008 -11.62445 -11.43204 -11.13733 -10.92721 -10.91055 -10.62707 -10.32322 -9.54920 -9.02208 -8.21825 -6.30848 1.40177 1.40888 1.55055 1.68868 1.98637 2.41019 3.10662 3.33081 3.56228 3.78406 3.82977 3.89590 4.16374 4.18512 4.25752 4.32782 4.38540 4.48227 4.49827 4.55305 4.57160 4.58190 4.65868 4.68649 4.76828 4.80027 4.98307 5.04211 5.06317 5.10213 5.13636 5.15672 5.18861 5.25555 5.31504 5.35826 5.38543 5.42931 5.53757 5.63408 5.80460 6.00693 6.27030 6.36220 6.61260 6.83787 7.30676 7.38547 8.89362 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033432 B = 0.003622 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.310689 B = 7728.790449 C = 7951.563637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.088 4.088 3 H 0.093 0.907 4 C -0.156 4.156 5 C -0.111 4.111 6 C -0.114 4.114 7 C -0.130 4.130 8 C 0.154 3.846 9 H 0.054 0.946 10 N -0.599 5.599 11 C 0.036 3.964 12 C 0.517 3.483 13 O -0.559 6.559 14 C 0.040 3.960 15 N -0.541 5.541 16 C 0.046 3.954 17 C 0.210 3.790 18 C -0.527 4.527 19 H 0.055 0.945 20 C 0.006 3.994 21 N -0.930 5.930 22 Si 0.967 3.033 23 H -0.270 1.270 24 H -0.275 1.275 25 H -0.275 1.275 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.058 0.942 35 H 0.039 0.961 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.133 0.867 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.104 0.896 42 H 0.011 0.989 43 H 0.053 0.947 44 H 0.071 0.929 45 H -0.029 1.029 46 H 0.013 0.987 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.656 17.784 17.145 24.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.107 4.107 3 H 0.111 0.889 4 C -0.192 4.192 5 C -0.149 4.149 6 C -0.152 4.152 7 C -0.168 4.168 8 C 0.051 3.949 9 H 0.072 0.928 10 N -0.333 5.333 11 C -0.105 4.105 12 C 0.305 3.695 13 O -0.437 6.437 14 C -0.092 4.092 15 N -0.265 5.265 16 C -0.103 4.103 17 C 0.084 3.916 18 C -0.565 4.565 19 H 0.073 0.927 20 C -0.192 4.192 21 N -0.571 5.571 22 Si 0.792 3.208 23 H -0.194 1.194 24 H -0.201 1.201 25 H -0.201 1.201 26 H 0.080 0.920 27 H 0.101 0.899 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.150 0.850 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.122 0.878 42 H 0.030 0.970 43 H 0.072 0.928 44 H 0.089 0.911 45 H -0.012 1.012 46 H 0.031 0.969 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.666 18.182 16.292 24.687 hybrid contribution 0.370 -1.249 -0.561 1.418 sum 4.036 16.933 15.731 23.462 Atomic orbital electron populations 1.22207 0.94286 1.02358 1.03317 1.21341 0.96290 0.99918 0.93119 0.88860 1.22649 0.95705 1.03938 0.96921 1.21478 0.96075 1.00643 0.96690 1.21442 0.99888 0.99028 0.94796 1.21846 0.95318 1.01452 0.98227 1.21040 0.93746 0.81221 0.98898 0.92762 1.47847 1.58449 1.12670 1.14382 1.23092 0.97744 1.01730 0.87932 1.20665 0.78661 0.87844 0.82345 1.90604 1.43760 1.74740 1.34619 1.22026 1.02485 0.92342 0.92297 1.61702 1.10171 1.25269 1.29377 1.22202 0.87693 1.00281 1.00080 1.19436 0.92760 0.83573 0.95853 1.21458 1.34766 1.04256 0.96001 0.92656 1.25828 0.94686 0.96633 1.02049 1.70060 1.37120 1.14137 1.35762 0.85363 0.78117 0.78074 0.79243 1.19395 1.20069 1.20061 0.92013 0.89944 0.92640 0.88129 0.89878 0.91220 0.91588 0.93498 0.92365 0.94187 0.90100 0.91227 0.84983 0.91324 0.91774 0.87794 0.97047 0.92772 0.91077 1.01161 0.96920 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 8.19 71.98 0.59 -1.49 16 2 C -0.09 -1.23 2.47 -10.79 -0.03 -1.26 16 3 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 4 C -0.16 -1.77 4.53 30.60 0.14 -1.63 16 5 C -0.11 -1.46 5.92 30.60 0.18 -1.28 16 6 C -0.11 -2.17 5.77 30.60 0.18 -2.00 16 7 C -0.13 -2.94 5.37 30.59 0.16 -2.78 16 8 C 0.15 3.40 2.20 44.99 0.10 3.50 16 9 H 0.05 1.45 8.06 -2.38 -0.02 1.43 16 10 N -0.60 -14.78 1.94 -829.51 -1.61 -16.39 16 11 C 0.04 0.61 6.73 127.77 0.86 1.47 16 12 C 0.52 17.89 7.15 87.66 0.63 18.52 16 13 O -0.56 -23.78 13.04 -3.02 -0.04 -23.82 16 14 C 0.04 1.46 4.05 85.56 0.35 1.81 16 15 N -0.54 -25.68 4.49 -931.65 -4.18 -29.86 16 16 C 0.05 2.06 9.03 127.69 1.15 3.21 16 17 C 0.21 11.48 4.72 85.56 0.40 11.89 16 18 C -0.53 -31.16 8.46 25.60 0.22 -30.95 16 19 H 0.06 3.32 7.12 -2.91 -0.02 3.30 16 20 C 0.01 0.37 5.46 84.65 0.46 0.83 16 21 N -0.93 -56.04 13.29 21.44 0.28 -55.76 16 22 Si 0.97 45.53 29.54 68.60 2.03 47.56 16 23 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 26 H 0.06 0.95 5.31 -2.39 -0.01 0.93 16 27 H 0.08 0.70 7.87 -2.38 -0.02 0.68 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.10 1.16 3.15 -4.96 -0.02 1.14 16 30 H 0.08 0.66 8.11 -2.39 -0.02 0.64 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.05 1.03 7.05 -2.39 -0.02 1.02 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.04 1.21 6.87 -2.39 -0.02 1.19 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 1.05 6.70 -2.39 -0.02 1.04 16 38 H 0.13 1.61 2.75 -2.39 -0.01 1.61 16 39 H 0.07 1.20 6.58 -2.39 -0.02 1.18 16 40 H 0.06 2.16 8.09 -2.39 -0.02 2.14 16 41 H 0.10 3.59 7.18 -2.39 -0.02 3.57 16 42 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.05 2.60 6.76 -2.39 -0.02 2.58 16 44 H 0.07 3.11 5.88 -2.38 -0.01 3.09 16 45 H -0.03 -1.69 8.12 -2.39 -0.02 -1.71 16 46 H 0.01 0.73 7.93 -2.39 -0.02 0.71 16 47 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -71.40 342.50 2.80 -68.60 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.93 Total: 9.82 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 5.39 Total: -0.15 kcal Atomic # 7 Polarization: -96.50 SS G_CDS: -5.51 Total: -102.01 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.04 Total: -23.82 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -71.40 2.80 -68.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083217229.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.183 kcal (2) G-P(sol) polarization free energy of solvation -71.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds