Wall clock time and date at job start Tue Mar 31 2020 06:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.52053 * 2 1 4 4 C 1.53116 * 109.52279 * 239.80724 * 2 1 3 5 5 C 1.53032 * 109.27926 * 297.74908 * 4 2 1 6 6 N 1.46849 * 109.52573 * 300.82144 * 5 4 2 7 7 C 1.46901 * 111.00372 * 185.83873 * 6 5 4 8 8 C 1.53000 * 109.46769 * 45.78950 * 7 6 5 9 9 C 1.50703 * 109.46912 * 180.02562 * 8 7 6 10 10 O 1.21278 * 119.99985 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00161 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99832 * 359.97438 * 11 9 8 13 13 C 1.46496 * 120.00271 * 180.02562 * 11 9 8 14 14 C 1.50699 * 109.47398 * 89.99557 * 13 11 9 15 15 H 1.08003 * 120.00015 * 0.02562 * 14 13 11 16 16 C 1.37873 * 120.00048 * 180.02562 * 14 13 11 17 17 N 1.31522 * 119.99916 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00086 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47340 * 89.99836 * 18 16 14 20 20 H 1.48500 * 109.47003 * 210.00191 * 18 16 14 21 21 H 1.48498 * 109.47056 * 329.99743 * 18 16 14 22 22 C 1.46852 * 111.19645 * 61.74127 * 6 5 4 23 23 C 1.53036 * 109.52447 * 298.25820 * 22 6 5 24 24 H 1.08996 * 109.50375 * 299.20290 * 23 22 6 25 25 C 1.52994 * 109.50633 * 179.11643 * 23 22 6 26 26 H 1.08994 * 109.47323 * 299.87906 * 1 2 3 27 27 H 1.09004 * 109.46813 * 59.87746 * 1 2 3 28 28 H 1.09000 * 109.47330 * 179.87123 * 1 2 3 29 29 H 1.08996 * 109.50763 * 57.69733 * 4 2 1 30 30 H 1.09005 * 109.50133 * 177.81157 * 4 2 1 31 31 H 1.09000 * 109.46531 * 180.80899 * 5 4 2 32 32 H 1.09002 * 109.46278 * 60.84063 * 5 4 2 33 33 H 1.09001 * 109.46874 * 285.79230 * 7 6 5 34 34 H 1.08992 * 109.47407 * 165.79248 * 7 6 5 35 35 H 1.09002 * 109.47398 * 300.00295 * 8 7 6 36 36 H 1.09001 * 109.47194 * 60.00475 * 8 7 6 37 37 H 1.08999 * 109.47333 * 89.99805 * 12 11 9 38 38 H 1.08997 * 109.47024 * 210.00620 * 12 11 9 39 39 H 1.09000 * 109.46875 * 330.00379 * 12 11 9 40 40 H 1.09000 * 109.47082 * 209.99555 * 13 11 9 41 41 H 1.09004 * 109.46754 * 329.99821 * 13 11 9 42 42 H 0.96999 * 119.99664 * 180.02562 * 17 16 14 43 43 H 1.08998 * 109.46138 * 58.27279 * 22 6 5 44 44 H 1.08998 * 109.46453 * 178.25266 * 22 6 5 45 45 H 1.09007 * 109.46904 * 60.00030 * 25 23 22 46 46 H 1.08998 * 109.47315 * 179.97438 * 25 23 22 47 47 H 1.09002 * 109.47474 * 300.00630 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0417 -0.7258 -1.2474 5 6 1.5766 -2.1832 -1.2103 6 7 2.0925 -2.8324 0.0017 7 6 1.7824 -4.2683 0.0026 8 6 2.1080 -4.8611 -1.3698 9 6 1.7893 -6.3341 -1.3691 10 8 1.3459 -6.8581 -0.3693 11 7 1.9980 -7.0692 -2.4793 12 6 2.5341 -6.4363 -3.6869 13 6 1.6876 -8.5009 -2.4788 14 6 0.2602 -8.7057 -2.9164 15 1 -0.3543 -7.8545 -3.1700 16 6 -0.2613 -9.9797 -2.9931 17 7 -1.5073 -10.1584 -3.3745 18 14 0.8013 -11.4519 -2.5539 19 1 0.6608 -11.7494 -1.1058 20 1 0.3661 -12.6303 -3.3459 21 1 2.2217 -11.1464 -2.8609 22 6 1.5766 -2.1818 1.2130 23 6 2.0417 -0.7243 1.2483 24 1 3.1309 -0.6903 1.2686 25 6 1.4858 -0.0409 2.4992 26 1 -0.3633 0.5119 0.8910 27 1 -0.3633 0.5158 -0.8889 28 1 -0.3634 -1.0276 -0.0023 29 1 1.6459 -0.2400 -2.1392 30 1 3.1310 -0.6918 -1.2669 31 1 1.9514 -2.7065 -2.0900 32 1 0.4872 -2.2168 -1.2047 33 1 0.7235 -4.4111 0.2181 34 1 2.3791 -4.7684 0.7653 35 1 1.5112 -4.3609 -2.1326 36 1 3.1669 -4.7183 -1.5853 37 1 3.6229 -6.4856 -3.6701 38 1 2.1602 -6.9587 -4.5674 39 1 2.2182 -5.3937 -3.7215 40 1 2.3563 -9.0179 -3.1671 41 1 1.8205 -8.9011 -1.4736 42 1 -1.8742 -11.0547 -3.4281 43 1 0.4871 -2.2154 1.2073 44 1 1.9514 -2.7039 2.0933 45 1 1.8475 -0.5590 3.3874 46 1 1.8177 0.9970 2.5241 47 1 0.3965 -0.0740 2.4777 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092808593.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:53 Heat of formation + Delta-G solvation = -42.410961 kcal Electronic energy + Delta-G solvation = -23051.408937 eV Core-core repulsion = 19847.735745 eV Total energy + Delta-G solvation = -3203.673192 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.02048 -38.94569 -35.54658 -34.83338 -32.56354 -32.34636 -30.82160 -28.53897 -28.03746 -26.22609 -25.78119 -24.50814 -22.65167 -22.31908 -20.63901 -18.50603 -18.33534 -16.95890 -16.83247 -15.80457 -15.52827 -15.43715 -15.14679 -14.65371 -14.48398 -14.40221 -13.92745 -13.44131 -13.16934 -12.83352 -12.72057 -12.36888 -12.32300 -12.14631 -12.11008 -12.02129 -11.99256 -11.59547 -11.56372 -11.25814 -11.14716 -11.04739 -10.85028 -10.54782 -10.50730 -10.27964 -10.26340 -10.12703 -9.54149 -8.98151 -8.58733 -8.26094 -7.68939 -6.08709 -4.07442 3.29583 3.35540 3.37011 3.37569 3.65015 4.07436 4.39937 4.49103 4.58115 4.67216 4.92626 5.07465 5.13226 5.20153 5.21873 5.25897 5.26114 5.29515 5.38407 5.45085 5.49808 5.52397 5.58884 5.61435 5.70009 5.77172 5.79034 5.85185 5.85971 5.93146 6.01045 6.05349 6.06711 6.15900 6.17326 6.19214 6.31605 6.70560 6.95128 7.07111 7.08835 7.34934 7.61520 8.26211 8.47323 8.92865 9.00034 9.51723 11.04753 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031356 B = 0.003234 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.761462 B = 8656.753705 C = 8757.512133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.088 4.088 3 H 0.068 0.932 4 C -0.111 4.111 5 C 0.043 3.957 6 N -0.539 5.539 7 C 0.073 3.927 8 C -0.141 4.141 9 C 0.507 3.493 10 O -0.543 6.543 11 N -0.599 5.599 12 C 0.084 3.916 13 C 0.215 3.785 14 C -0.529 4.529 15 H 0.073 0.927 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.878 3.122 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.266 1.266 22 C 0.059 3.941 23 C -0.083 4.083 24 H 0.077 0.923 25 C -0.149 4.149 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.043 0.957 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.030 0.970 41 H 0.036 0.964 42 H 0.264 0.736 43 H 0.037 0.963 44 H 0.073 0.927 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.112 21.193 4.867 23.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.107 4.107 3 H 0.086 0.914 4 C -0.149 4.149 5 C -0.085 4.085 6 N -0.263 5.263 7 C -0.055 4.055 8 C -0.181 4.181 9 C 0.294 3.706 10 O -0.421 6.421 11 N -0.331 5.331 12 C -0.060 4.060 13 C 0.094 3.906 14 C -0.567 4.567 15 H 0.091 0.909 16 C -0.131 4.131 17 N -0.537 5.537 18 Si 0.704 3.296 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.190 1.190 22 C -0.069 4.069 23 C -0.102 4.102 24 H 0.095 0.905 25 C -0.207 4.207 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.055 0.945 44 H 0.091 0.909 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.246 20.791 5.344 23.373 hybrid contribution -0.545 -0.960 -0.007 1.103 sum 8.702 19.831 5.337 22.304 Atomic orbital electron populations 1.22010 0.95559 1.02111 1.01510 1.21175 0.95689 0.98963 0.94874 0.91362 1.21615 1.01396 0.94617 0.97270 1.22272 0.97697 0.94832 0.93660 1.62021 1.59649 1.02586 1.02055 1.21816 1.00325 0.86388 0.96980 1.21801 1.03584 0.93745 0.98960 1.20329 0.78558 0.88327 0.83432 1.90664 1.45060 1.73243 1.33160 1.47843 1.62954 1.11165 1.11152 1.21655 0.97541 0.97869 0.88919 1.19656 0.96911 0.76268 0.97747 1.21336 0.95574 0.94302 1.45500 0.90861 1.24870 0.94923 0.98771 0.94529 1.69904 1.13778 1.22372 1.47639 0.86827 0.81099 0.82498 0.79135 1.19895 1.21069 1.19046 1.22145 0.97533 0.94261 0.92922 1.21155 1.00807 0.93898 0.94336 0.90463 1.21866 1.01309 1.00236 0.97263 0.92484 0.92886 0.92356 0.91659 0.91176 0.90151 0.94556 0.93899 0.89882 0.89211 0.88761 0.93599 0.90636 0.92196 0.95254 0.94563 0.92569 0.94520 0.90866 0.92657 0.92626 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.20 37.16 0.30 -1.00 16 2 C -0.09 -0.74 2.77 -90.49 -0.25 -0.99 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.11 -0.98 5.60 -26.65 -0.15 -1.13 16 5 C 0.04 0.46 4.60 -3.84 -0.02 0.44 16 6 N -0.54 -6.44 4.81 -234.67 -1.13 -7.57 16 7 C 0.07 1.05 4.56 -3.82 -0.02 1.03 16 8 C -0.14 -2.06 3.50 -27.88 -0.10 -2.16 16 9 C 0.51 10.39 7.67 -10.98 -0.08 10.30 16 10 O -0.54 -13.49 15.56 5.56 0.09 -13.40 16 11 N -0.60 -12.48 2.86 -182.95 -0.52 -13.01 16 12 C 0.08 1.29 10.24 59.85 0.61 1.90 16 13 C 0.21 5.34 4.23 -5.20 -0.02 5.32 16 14 C -0.53 -15.40 9.94 -34.44 -0.34 -15.75 16 15 H 0.07 2.34 8.06 -52.48 -0.42 1.91 16 16 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 17 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 18 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 19 H -0.27 -6.84 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 22 C 0.06 0.64 4.46 -3.83 -0.02 0.62 16 23 C -0.08 -0.73 2.66 -90.54 -0.24 -0.98 16 24 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 25 C -0.15 -1.12 8.79 37.15 0.33 -0.79 16 26 H 0.06 0.44 6.39 -51.93 -0.33 0.11 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.57 4.92 -51.93 -0.26 0.32 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.83 5.81 -51.93 -0.30 0.53 16 32 H 0.04 0.42 6.51 -51.93 -0.34 0.08 16 33 H 0.04 0.70 8.04 -51.93 -0.42 0.28 16 34 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 35 H 0.09 1.20 5.47 -51.93 -0.28 0.92 16 36 H 0.09 1.20 8.11 -51.93 -0.42 0.78 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 39 H 0.06 0.76 6.44 -51.93 -0.33 0.42 16 40 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 41 H 0.04 0.96 6.85 -51.93 -0.36 0.61 16 42 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 43 H 0.04 0.42 6.51 -51.93 -0.34 0.08 16 44 H 0.07 0.80 8.12 -51.93 -0.42 0.37 16 45 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 46 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 0.44 6.38 -51.93 -0.33 0.11 16 LS Contribution 352.46 15.07 5.31 5.31 Total: -1.00 -33.53 352.46 -8.55 -42.09 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -8.31 Total: -2.20 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -0.09 Total: -1.16 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -0.88 Total: -47.77 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.09 Total: -13.40 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.53 -8.55 -42.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092808593.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.323 kcal (2) G-P(sol) polarization free energy of solvation -33.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds