Wall clock time and date at job start Tue Mar 31 2020 06:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.52053 * 2 1 4 4 C 1.53116 * 109.52279 * 239.80724 * 2 1 3 5 5 C 1.53032 * 109.27926 * 297.74908 * 4 2 1 6 6 N 1.46849 * 109.52573 * 300.82144 * 5 4 2 7 7 C 1.46901 * 111.00372 * 185.83873 * 6 5 4 8 8 C 1.53000 * 109.46769 * 45.78950 * 7 6 5 9 9 C 1.50703 * 109.46912 * 180.02562 * 8 7 6 10 10 O 1.21278 * 119.99985 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00161 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99832 * 359.97438 * 11 9 8 13 13 C 1.46496 * 120.00271 * 180.02562 * 11 9 8 14 14 C 1.50699 * 109.47398 * 89.99557 * 13 11 9 15 15 H 1.08003 * 120.00015 * 0.02562 * 14 13 11 16 16 C 1.37873 * 120.00048 * 180.02562 * 14 13 11 17 17 N 1.31522 * 119.99916 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00086 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47340 * 89.99836 * 18 16 14 20 20 H 1.48500 * 109.47003 * 210.00191 * 18 16 14 21 21 H 1.48498 * 109.47056 * 329.99743 * 18 16 14 22 22 C 1.46852 * 111.19645 * 61.74127 * 6 5 4 23 23 C 1.53036 * 109.52447 * 298.25820 * 22 6 5 24 24 H 1.08996 * 109.50375 * 299.20290 * 23 22 6 25 25 C 1.52994 * 109.50633 * 179.11643 * 23 22 6 26 26 H 1.08994 * 109.47323 * 299.87906 * 1 2 3 27 27 H 1.09004 * 109.46813 * 59.87746 * 1 2 3 28 28 H 1.09000 * 109.47330 * 179.87123 * 1 2 3 29 29 H 1.08996 * 109.50763 * 57.69733 * 4 2 1 30 30 H 1.09005 * 109.50133 * 177.81157 * 4 2 1 31 31 H 1.09000 * 109.46531 * 180.80899 * 5 4 2 32 32 H 1.09002 * 109.46278 * 60.84063 * 5 4 2 33 33 H 1.09001 * 109.46874 * 285.79230 * 7 6 5 34 34 H 1.08992 * 109.47407 * 165.79248 * 7 6 5 35 35 H 1.09002 * 109.47398 * 300.00295 * 8 7 6 36 36 H 1.09001 * 109.47194 * 60.00475 * 8 7 6 37 37 H 1.08999 * 109.47333 * 89.99805 * 12 11 9 38 38 H 1.08997 * 109.47024 * 210.00620 * 12 11 9 39 39 H 1.09000 * 109.46875 * 330.00379 * 12 11 9 40 40 H 1.09000 * 109.47082 * 209.99555 * 13 11 9 41 41 H 1.09004 * 109.46754 * 329.99821 * 13 11 9 42 42 H 0.96999 * 119.99664 * 180.02562 * 17 16 14 43 43 H 1.08998 * 109.46138 * 58.27279 * 22 6 5 44 44 H 1.08998 * 109.46453 * 178.25266 * 22 6 5 45 45 H 1.09007 * 109.46904 * 60.00030 * 25 23 22 46 46 H 1.08998 * 109.47315 * 179.97438 * 25 23 22 47 47 H 1.09002 * 109.47474 * 300.00630 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0417 -0.7258 -1.2474 5 6 1.5766 -2.1832 -1.2103 6 7 2.0925 -2.8324 0.0017 7 6 1.7824 -4.2683 0.0026 8 6 2.1080 -4.8611 -1.3698 9 6 1.7893 -6.3341 -1.3691 10 8 1.3459 -6.8581 -0.3693 11 7 1.9980 -7.0692 -2.4793 12 6 2.5341 -6.4363 -3.6869 13 6 1.6876 -8.5009 -2.4788 14 6 0.2602 -8.7057 -2.9164 15 1 -0.3543 -7.8545 -3.1700 16 6 -0.2613 -9.9797 -2.9931 17 7 -1.5073 -10.1584 -3.3745 18 14 0.8013 -11.4519 -2.5539 19 1 0.6608 -11.7494 -1.1058 20 1 0.3661 -12.6303 -3.3459 21 1 2.2217 -11.1464 -2.8609 22 6 1.5766 -2.1818 1.2130 23 6 2.0417 -0.7243 1.2483 24 1 3.1309 -0.6903 1.2686 25 6 1.4858 -0.0409 2.4992 26 1 -0.3633 0.5119 0.8910 27 1 -0.3633 0.5158 -0.8889 28 1 -0.3634 -1.0276 -0.0023 29 1 1.6459 -0.2400 -2.1392 30 1 3.1310 -0.6918 -1.2669 31 1 1.9514 -2.7065 -2.0900 32 1 0.4872 -2.2168 -1.2047 33 1 0.7235 -4.4111 0.2181 34 1 2.3791 -4.7684 0.7653 35 1 1.5112 -4.3609 -2.1326 36 1 3.1669 -4.7183 -1.5853 37 1 3.6229 -6.4856 -3.6701 38 1 2.1602 -6.9587 -4.5674 39 1 2.2182 -5.3937 -3.7215 40 1 2.3563 -9.0179 -3.1671 41 1 1.8205 -8.9011 -1.4736 42 1 -1.8742 -11.0547 -3.4281 43 1 0.4871 -2.2154 1.2073 44 1 1.9514 -2.7039 2.0933 45 1 1.8475 -0.5590 3.3874 46 1 1.8177 0.9970 2.5241 47 1 0.3965 -0.0740 2.4777 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092808593.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:52 Heat of formation + Delta-G solvation = -65.284549 kcal Electronic energy + Delta-G solvation = -23052.400810 eV Core-core repulsion = 19847.735745 eV Total energy + Delta-G solvation = -3204.665066 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.08273 -40.32892 -36.79799 -36.29053 -34.71910 -33.07761 -32.14507 -30.22870 -28.90005 -27.42576 -26.85243 -25.71614 -24.11575 -23.35542 -21.81113 -19.86318 -19.26013 -19.16084 -18.16812 -17.15536 -16.83988 -16.73014 -16.24762 -15.93771 -15.62974 -15.38281 -15.24966 -14.69957 -14.39213 -14.31251 -13.83255 -13.69358 -13.65075 -13.48916 -13.32399 -13.05180 -12.89874 -12.81511 -12.77203 -12.45982 -12.39021 -12.25194 -12.09775 -11.95807 -11.87840 -11.76493 -11.28720 -11.04079 -11.00774 -10.85222 -10.66143 -9.41004 -9.25890 -8.36246 -6.41636 1.31547 1.35871 1.44461 1.77769 2.26434 2.29712 2.93426 2.98463 3.72702 3.75619 3.87053 3.93861 3.99374 4.09933 4.24327 4.36334 4.42372 4.46365 4.52583 4.59134 4.64784 4.67386 4.70538 4.75010 4.79613 4.82107 4.86568 4.89751 4.96649 4.98312 5.00231 5.04022 5.13575 5.14849 5.25415 5.31929 5.40431 5.43241 5.44003 5.60343 5.61528 6.05794 6.15498 6.21609 6.59467 6.68329 7.19199 7.40105 8.80844 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031356 B = 0.003234 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.761462 B = 8656.753705 C = 8757.512133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.088 4.088 3 H 0.084 0.916 4 C -0.107 4.107 5 C 0.038 3.962 6 N -0.532 5.532 7 C 0.080 3.920 8 C -0.121 4.121 9 C 0.496 3.504 10 O -0.599 6.599 11 N -0.608 5.608 12 C 0.077 3.923 13 C 0.222 3.778 14 C -0.538 4.538 15 H 0.027 0.973 16 C 0.009 3.991 17 N -0.946 5.946 18 Si 0.950 3.050 19 H -0.277 1.277 20 H -0.274 1.274 21 H -0.237 1.237 22 C 0.056 3.944 23 C -0.078 4.078 24 H 0.077 0.923 25 C -0.146 4.146 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.038 0.962 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.024 0.976 33 H 0.013 0.987 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.127 0.873 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.052 0.948 41 H 0.018 0.982 42 H 0.269 0.731 43 H 0.026 0.974 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.069 0.931 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.713 22.678 4.264 25.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.106 4.106 3 H 0.103 0.897 4 C -0.144 4.144 5 C -0.090 4.090 6 N -0.257 5.257 7 C -0.049 4.049 8 C -0.161 4.161 9 C 0.285 3.715 10 O -0.480 6.480 11 N -0.339 5.339 12 C -0.065 4.065 13 C 0.100 3.900 14 C -0.577 4.577 15 H 0.045 0.955 16 C -0.189 4.189 17 N -0.586 5.586 18 Si 0.773 3.227 19 H -0.203 1.203 20 H -0.199 1.199 21 H -0.160 1.160 22 C -0.072 4.072 23 C -0.096 4.096 24 H 0.096 0.904 25 C -0.204 4.204 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.043 0.957 33 H 0.031 0.969 34 H 0.089 0.911 35 H 0.126 0.874 36 H 0.145 0.855 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.108 0.892 40 H 0.070 0.930 41 H 0.036 0.964 42 H 0.078 0.922 43 H 0.044 0.956 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.088 0.912 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.878 22.326 4.700 25.723 hybrid contribution -1.441 -1.335 0.170 1.971 sum 10.437 20.992 4.870 23.944 Atomic orbital electron populations 1.21987 0.95806 1.01014 1.02179 1.21201 0.95422 0.99659 0.94315 0.89735 1.21607 1.01657 0.93097 0.98074 1.22401 0.97109 0.96338 0.93134 1.62088 1.59438 1.01049 1.03103 1.21642 0.98248 0.88283 0.96684 1.21737 1.05731 0.89180 0.99452 1.21360 0.77252 0.90463 0.82461 1.90631 1.47464 1.74726 1.35212 1.47987 1.62841 1.09928 1.13171 1.21989 0.99530 0.98918 0.86081 1.19339 0.94525 0.79442 0.96735 1.21575 0.97500 0.93125 1.45451 0.95486 1.25889 0.96374 1.02388 0.94205 1.70056 1.15989 1.23490 1.49090 0.85680 0.80511 0.78090 0.78459 1.20267 1.19874 1.15969 1.22229 0.96940 0.95731 0.92306 1.21126 1.00762 0.92347 0.95403 0.90430 1.21845 1.01105 1.00873 0.96572 0.91852 0.92235 0.94292 0.90286 0.90715 0.89371 0.95749 0.96861 0.91133 0.87382 0.85489 0.90000 0.91620 0.89205 0.93033 0.96440 0.92229 0.95573 0.91435 0.92660 0.91236 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 8.20 71.98 0.59 -1.76 16 2 C -0.09 -1.26 2.77 -10.71 -0.03 -1.29 16 3 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 4 C -0.11 -1.60 5.60 30.64 0.17 -1.43 16 5 C 0.04 0.74 4.60 86.32 0.40 1.14 16 6 N -0.53 -12.23 4.81 -896.37 -4.31 -16.54 16 7 C 0.08 2.32 4.56 86.30 0.39 2.72 16 8 C -0.12 -3.37 3.50 29.85 0.10 -3.27 16 9 C 0.50 20.31 7.67 87.66 0.67 20.98 16 10 O -0.60 -30.78 15.56 -3.02 -0.05 -30.83 16 11 N -0.61 -24.86 2.86 -851.13 -2.43 -27.29 16 12 C 0.08 2.14 10.24 127.77 1.31 3.45 16 13 C 0.22 11.00 4.23 85.63 0.36 11.36 16 14 C -0.54 -32.23 9.94 25.60 0.25 -31.98 16 15 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 16 C 0.01 0.56 5.47 84.65 0.46 1.02 16 17 N -0.95 -60.60 13.96 21.45 0.30 -60.30 16 18 Si 0.95 45.00 27.47 68.60 1.88 46.89 16 19 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 21 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 22 C 0.06 1.19 4.46 86.32 0.38 1.57 16 23 C -0.08 -1.24 2.66 -10.74 -0.03 -1.27 16 24 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 25 C -0.15 -1.96 8.79 71.98 0.63 -1.33 16 26 H 0.06 0.88 6.39 -2.39 -0.02 0.87 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.04 0.75 4.92 -2.39 -0.01 0.74 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.09 1.58 5.81 -2.39 -0.01 1.56 16 32 H 0.02 0.55 6.51 -2.39 -0.02 0.53 16 33 H 0.01 0.45 8.04 -2.39 -0.02 0.43 16 34 H 0.07 2.22 8.10 -2.39 -0.02 2.20 16 35 H 0.11 2.65 5.47 -2.39 -0.01 2.63 16 36 H 0.13 2.77 8.11 -2.39 -0.02 2.75 16 37 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.06 1.98 8.07 -2.39 -0.02 1.96 16 39 H 0.09 1.96 6.44 -2.39 -0.02 1.94 16 40 H 0.05 2.32 7.13 -2.39 -0.02 2.31 16 41 H 0.02 0.93 6.85 -2.39 -0.02 0.92 16 42 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 43 H 0.03 0.61 6.51 -2.39 -0.02 0.60 16 44 H 0.07 1.49 8.12 -2.39 -0.02 1.47 16 45 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.05 0.77 6.38 -2.39 -0.02 0.76 16 Total: -1.00 -76.76 352.46 1.94 -74.82 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.87 Total: 13.34 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 5.68 Total: -0.08 kcal Atomic # 7 Polarization: -97.69 SS G_CDS: -6.44 Total: -104.13 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -0.05 Total: -30.83 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.89 kcal Total: -76.76 1.94 -74.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092808593.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.532 kcal (2) G-P(sol) polarization free energy of solvation -76.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds