Wall clock time and date at job start Tue Mar 31 2020 06:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.50363 * 2 1 4 4 C 1.53040 * 109.53293 * 120.09150 * 2 1 3 5 5 N 1.46850 * 109.52186 * 179.14095 * 4 2 1 6 6 C 1.46898 * 110.99765 * 174.16294 * 5 4 2 7 7 C 1.53001 * 109.47045 * 190.25521 * 6 5 4 8 8 C 1.50698 * 109.47377 * 179.97438 * 7 6 5 9 9 O 1.21285 * 119.99686 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00318 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00005 * 0.02562 * 10 8 7 12 12 C 1.46499 * 120.00337 * 180.02562 * 10 8 7 13 13 C 1.50701 * 109.46992 * 269.99986 * 12 10 8 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 10 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 10 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 C 1.46850 * 111.19631 * 298.25980 * 5 4 2 22 22 C 1.53036 * 109.52536 * 61.74422 * 21 5 4 23 23 C 1.53112 * 109.50803 * 239.91699 * 2 1 3 24 24 H 1.09000 * 109.52155 * 302.27397 * 23 2 1 25 25 C 1.53000 * 109.57369 * 62.42584 * 23 2 1 26 26 H 1.08999 * 109.47088 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46984 * 300.08255 * 1 2 3 28 28 H 1.09000 * 109.46882 * 60.08189 * 1 2 3 29 29 H 1.08996 * 109.46044 * 59.12885 * 4 2 1 30 30 H 1.08998 * 109.46302 * 299.15778 * 4 2 1 31 31 H 1.08997 * 109.47492 * 70.26068 * 6 5 4 32 32 H 1.08998 * 109.47157 * 310.25190 * 6 5 4 33 33 H 1.09006 * 109.47070 * 59.99726 * 7 6 5 34 34 H 1.09003 * 109.47478 * 300.00192 * 7 6 5 35 35 H 1.08996 * 109.47461 * 270.00146 * 11 10 8 36 36 H 1.08998 * 109.46888 * 29.99915 * 11 10 8 37 37 H 1.08994 * 109.47490 * 149.99977 * 11 10 8 38 38 H 1.09002 * 109.47391 * 149.99977 * 12 10 8 39 39 H 1.09001 * 109.46813 * 30.00033 * 12 10 8 40 40 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 41 41 H 1.09007 * 109.45937 * 181.75763 * 21 5 4 42 42 H 1.08993 * 109.46271 * 301.72107 * 21 5 4 43 43 H 1.09003 * 109.50455 * 60.75660 * 22 21 5 44 44 H 1.08997 * 109.50324 * 180.87569 * 22 21 5 45 45 H 1.09001 * 109.47188 * 179.71527 * 25 23 2 46 46 H 1.08997 * 109.47387 * 299.71699 * 25 23 2 47 47 H 1.09000 * 109.47125 * 59.72057 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0417 -0.7232 1.2479 5 7 3.5101 -0.7410 1.2373 6 6 4.0387 -1.3045 2.4867 7 6 5.5500 -1.0750 2.5504 8 6 6.0923 -1.6525 3.8324 9 8 5.3437 -2.1947 4.6176 10 7 7.4093 -1.5673 4.1059 11 6 8.3136 -0.9128 3.1572 12 6 7.9365 -2.1292 5.3519 13 6 7.9014 -1.0782 6.4313 14 1 7.5237 -0.0906 6.2114 15 6 8.3505 -1.3777 7.7000 16 7 8.8099 -2.5805 7.9680 17 14 8.3063 -0.0751 9.0382 18 1 6.9054 0.3702 9.2494 19 1 8.8409 -0.6447 10.3012 20 1 9.1379 1.0847 8.6278 21 6 4.0238 -1.4716 0.0716 22 6 3.5713 -0.7707 -1.2114 23 6 2.0413 -0.7234 -1.2488 24 1 1.6459 -1.7390 -1.2690 25 6 1.5835 0.0284 -2.5002 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5151 0.8892 28 1 -0.3633 0.5126 -0.8907 29 1 1.6662 -1.7463 1.2543 30 1 1.6913 -0.2022 2.1389 31 1 3.8321 -2.3742 2.5189 32 1 3.5610 -0.8164 3.3362 33 1 5.7568 -0.0052 2.5182 34 1 6.0279 -1.5630 1.7009 35 1 8.6941 -1.6499 2.4502 36 1 7.7728 -0.1361 2.6165 37 1 9.1468 -0.4653 3.6990 38 1 8.9646 -2.4563 5.1966 39 1 7.3260 -2.9804 5.6535 40 1 9.1262 -2.7911 8.8605 41 1 5.1130 -1.4942 0.1083 42 1 3.6390 -2.4913 0.0836 43 1 3.9673 0.2446 -1.2305 44 1 3.9397 -1.3220 -2.0765 45 1 1.9526 -0.4851 -3.3880 46 1 0.4944 0.0615 -2.5261 47 1 1.9775 1.0445 -2.4782 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092808594.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:56 Heat of formation + Delta-G solvation = -54.174679 kcal Electronic energy + Delta-G solvation = -22749.836949 eV Core-core repulsion = 19545.653644 eV Total energy + Delta-G solvation = -3204.183305 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.73720 -38.78685 -35.57884 -34.71278 -32.61872 -32.35983 -31.02530 -28.46708 -27.60940 -26.28092 -25.59739 -23.81735 -22.42172 -22.32801 -20.71061 -19.78652 -18.27044 -16.59849 -16.49547 -15.54885 -15.42151 -15.15214 -14.86741 -14.77586 -14.53405 -14.26494 -14.06328 -13.55270 -13.12977 -12.86449 -12.41165 -12.29499 -12.17382 -12.14101 -12.10829 -11.93094 -11.90516 -11.74348 -11.40305 -11.16647 -11.12063 -10.94231 -10.84950 -10.66196 -10.52823 -10.28847 -10.22053 -10.12570 -9.61603 -8.84840 -8.41135 -8.32686 -7.60292 -6.01994 -4.06715 3.33620 3.37719 3.39968 3.49955 3.68844 4.18603 4.46743 4.49923 4.55874 4.60489 4.88386 5.12681 5.19467 5.24098 5.25913 5.29570 5.32963 5.35137 5.36028 5.43981 5.49110 5.54701 5.59701 5.64898 5.70460 5.76672 5.77394 5.86363 5.90450 5.96600 5.99155 6.02641 6.08034 6.16103 6.19511 6.26501 6.31655 7.06298 7.07937 7.11656 7.47068 7.57908 7.94597 8.26328 8.46453 8.92905 9.14140 9.58314 11.06096 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031421 B = 0.003048 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.901584 B = 9184.320058 C = 9604.060804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 H 0.078 0.922 4 C 0.061 3.939 5 N -0.540 5.540 6 C 0.073 3.927 7 C -0.134 4.134 8 C 0.504 3.496 9 O -0.546 6.546 10 N -0.604 5.604 11 C 0.084 3.916 12 C 0.245 3.755 13 C -0.526 4.526 14 H 0.057 0.943 15 C 0.060 3.940 16 N -0.896 5.896 17 Si 0.899 3.101 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.050 3.950 22 C -0.111 4.111 23 C -0.089 4.089 24 H 0.065 0.935 25 C -0.147 4.147 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.032 0.968 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.031 0.969 39 H 0.043 0.957 40 H 0.264 0.736 41 H 0.077 0.923 42 H 0.031 0.969 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.052 0.948 46 H 0.055 0.945 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.447 4.880 -21.120 24.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 H 0.097 0.903 4 C -0.067 4.067 5 N -0.264 5.264 6 C -0.055 4.055 7 C -0.175 4.175 8 C 0.290 3.710 9 O -0.424 6.424 10 N -0.336 5.336 11 C -0.060 4.060 12 C 0.125 3.875 13 C -0.565 4.565 14 H 0.075 0.925 15 C -0.142 4.142 16 N -0.535 5.535 17 Si 0.726 3.274 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.078 4.078 22 C -0.149 4.149 23 C -0.108 4.108 24 H 0.083 0.917 25 C -0.204 4.204 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.049 0.951 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.570 4.947 -20.570 24.114 hybrid contribution -0.076 -0.129 0.868 0.881 sum -11.646 4.818 -19.702 23.388 Atomic orbital electron populations 1.21852 0.95176 1.01745 1.01828 1.21194 0.94944 1.00300 0.93789 0.90323 1.22114 0.87260 0.98911 0.98388 1.61896 1.07760 1.54368 1.02418 1.21783 0.94132 0.98319 0.91229 1.21646 0.96130 1.02924 0.96765 1.20327 0.82610 0.80473 0.87571 1.90662 1.56909 1.44769 1.50096 1.48159 1.06582 1.56729 1.22112 1.21631 0.94983 0.96575 0.92839 1.19273 0.94283 0.94862 0.79038 1.21410 1.41954 0.98154 0.94956 0.92517 1.24943 0.95182 0.95620 0.98414 1.69926 1.42421 1.19589 1.21571 0.86553 0.78464 0.81514 0.80856 1.20161 1.21186 1.20243 1.22160 1.00327 0.94947 0.90363 1.21646 0.95105 1.01606 0.96510 1.21218 0.95641 0.99270 0.94670 0.91691 1.21859 1.01080 1.00386 0.97072 0.92887 0.92570 0.92286 0.95007 0.90652 0.94099 0.89914 0.88734 0.89871 0.93886 0.92291 0.90860 0.95080 0.93912 0.92685 0.90429 0.95070 0.91040 0.91734 0.92937 0.92567 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.91 37.16 0.33 -0.79 16 2 C -0.08 -0.74 2.38 -90.54 -0.22 -0.96 16 3 H 0.08 0.76 8.14 -51.92 -0.42 0.33 16 4 C 0.06 0.67 4.74 -3.83 -0.02 0.65 16 5 N -0.54 -6.56 4.66 -234.67 -1.09 -7.65 16 6 C 0.07 1.08 4.25 -3.82 -0.02 1.06 16 7 C -0.13 -2.04 4.19 -27.88 -0.12 -2.15 16 8 C 0.50 10.65 7.67 -10.99 -0.08 10.57 16 9 O -0.55 -13.97 15.56 5.55 0.09 -13.88 16 10 N -0.60 -13.09 2.86 -182.96 -0.52 -13.61 16 11 C 0.08 1.35 10.24 59.85 0.61 1.96 16 12 C 0.24 6.55 5.16 -5.19 -0.03 6.52 16 13 C -0.53 -15.21 9.39 -34.44 -0.32 -15.53 16 14 H 0.06 1.64 7.81 -52.49 -0.41 1.22 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 17 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C 0.05 0.53 5.29 -3.83 -0.02 0.51 16 22 C -0.11 -0.97 5.38 -26.65 -0.14 -1.11 16 23 C -0.09 -0.74 2.28 -90.50 -0.21 -0.94 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 C -0.15 -1.01 8.90 37.16 0.33 -0.68 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.39 6.51 -51.93 -0.34 0.05 16 29 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.84 8.01 -51.93 -0.42 0.42 16 31 H 0.04 0.65 8.08 -51.93 -0.42 0.23 16 32 H 0.08 1.34 7.94 -51.93 -0.41 0.93 16 33 H 0.09 1.34 7.40 -51.93 -0.38 0.96 16 34 H 0.08 1.08 6.40 -51.93 -0.33 0.75 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 37 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 38 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 39 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.08 0.80 6.22 -51.93 -0.32 0.48 16 42 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.06 0.36 6.52 -51.93 -0.34 0.02 16 47 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 364.24 15.07 5.49 5.49 Total: -1.00 -32.74 364.24 -9.04 -41.78 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -8.72 Total: -3.74 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: 0.01 Total: 0.77 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -0.88 Total: -47.55 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.09 Total: -13.88 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.74 -9.04 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092808594.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.398 kcal (2) G-P(sol) polarization free energy of solvation -32.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds