Wall clock time and date at job start Tue Mar 31 2020 06:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.50363 * 2 1 4 4 C 1.53040 * 109.53293 * 120.09150 * 2 1 3 5 5 N 1.46850 * 109.52186 * 179.14095 * 4 2 1 6 6 C 1.46898 * 110.99765 * 174.16294 * 5 4 2 7 7 C 1.53001 * 109.47045 * 190.25521 * 6 5 4 8 8 C 1.50698 * 109.47377 * 179.97438 * 7 6 5 9 9 O 1.21285 * 119.99686 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00318 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00005 * 0.02562 * 10 8 7 12 12 C 1.46499 * 120.00337 * 180.02562 * 10 8 7 13 13 C 1.50701 * 109.46992 * 269.99986 * 12 10 8 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 10 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 10 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 C 1.46850 * 111.19631 * 298.25980 * 5 4 2 22 22 C 1.53036 * 109.52536 * 61.74422 * 21 5 4 23 23 C 1.53112 * 109.50803 * 239.91699 * 2 1 3 24 24 H 1.09000 * 109.52155 * 302.27397 * 23 2 1 25 25 C 1.53000 * 109.57369 * 62.42584 * 23 2 1 26 26 H 1.08999 * 109.47088 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46984 * 300.08255 * 1 2 3 28 28 H 1.09000 * 109.46882 * 60.08189 * 1 2 3 29 29 H 1.08996 * 109.46044 * 59.12885 * 4 2 1 30 30 H 1.08998 * 109.46302 * 299.15778 * 4 2 1 31 31 H 1.08997 * 109.47492 * 70.26068 * 6 5 4 32 32 H 1.08998 * 109.47157 * 310.25190 * 6 5 4 33 33 H 1.09006 * 109.47070 * 59.99726 * 7 6 5 34 34 H 1.09003 * 109.47478 * 300.00192 * 7 6 5 35 35 H 1.08996 * 109.47461 * 270.00146 * 11 10 8 36 36 H 1.08998 * 109.46888 * 29.99915 * 11 10 8 37 37 H 1.08994 * 109.47490 * 149.99977 * 11 10 8 38 38 H 1.09002 * 109.47391 * 149.99977 * 12 10 8 39 39 H 1.09001 * 109.46813 * 30.00033 * 12 10 8 40 40 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 41 41 H 1.09007 * 109.45937 * 181.75763 * 21 5 4 42 42 H 1.08993 * 109.46271 * 301.72107 * 21 5 4 43 43 H 1.09003 * 109.50455 * 60.75660 * 22 21 5 44 44 H 1.08997 * 109.50324 * 180.87569 * 22 21 5 45 45 H 1.09001 * 109.47188 * 179.71527 * 25 23 2 46 46 H 1.08997 * 109.47387 * 299.71699 * 25 23 2 47 47 H 1.09000 * 109.47125 * 59.72057 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0417 -0.7232 1.2479 5 7 3.5101 -0.7410 1.2373 6 6 4.0387 -1.3045 2.4867 7 6 5.5500 -1.0750 2.5504 8 6 6.0923 -1.6525 3.8324 9 8 5.3437 -2.1947 4.6176 10 7 7.4093 -1.5673 4.1059 11 6 8.3136 -0.9128 3.1572 12 6 7.9365 -2.1292 5.3519 13 6 7.9014 -1.0782 6.4313 14 1 7.5237 -0.0906 6.2114 15 6 8.3505 -1.3777 7.7000 16 7 8.8099 -2.5805 7.9680 17 14 8.3063 -0.0751 9.0382 18 1 6.9054 0.3702 9.2494 19 1 8.8409 -0.6447 10.3012 20 1 9.1379 1.0847 8.6278 21 6 4.0238 -1.4716 0.0716 22 6 3.5713 -0.7707 -1.2114 23 6 2.0413 -0.7234 -1.2488 24 1 1.6459 -1.7390 -1.2690 25 6 1.5835 0.0284 -2.5002 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5151 0.8892 28 1 -0.3633 0.5126 -0.8907 29 1 1.6662 -1.7463 1.2543 30 1 1.6913 -0.2022 2.1389 31 1 3.8321 -2.3742 2.5189 32 1 3.5610 -0.8164 3.3362 33 1 5.7568 -0.0052 2.5182 34 1 6.0279 -1.5630 1.7009 35 1 8.6941 -1.6499 2.4502 36 1 7.7728 -0.1361 2.6165 37 1 9.1468 -0.4653 3.6990 38 1 8.9646 -2.4563 5.1966 39 1 7.3260 -2.9804 5.6535 40 1 9.1262 -2.7911 8.8605 41 1 5.1130 -1.4942 0.1083 42 1 3.6390 -2.4913 0.0836 43 1 3.9673 0.2446 -1.2305 44 1 3.9397 -1.3220 -2.0765 45 1 1.9526 -0.4851 -3.3880 46 1 0.4944 0.0615 -2.5261 47 1 1.9775 1.0445 -2.4782 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092808594.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:55 Heat of formation + Delta-G solvation = -75.108174 kcal Electronic energy + Delta-G solvation = -22750.744694 eV Core-core repulsion = 19545.653644 eV Total energy + Delta-G solvation = -3205.091050 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.89848 -40.14465 -36.75589 -36.29809 -34.74109 -33.07670 -32.27693 -29.87565 -28.86311 -27.39692 -26.94237 -25.33035 -23.83494 -23.11936 -21.78743 -20.52375 -19.86610 -18.70738 -18.01794 -17.13204 -16.81957 -16.35141 -16.23587 -15.72190 -15.55477 -15.47651 -15.07611 -14.69971 -14.37418 -13.99182 -13.91202 -13.63969 -13.46265 -13.38498 -13.27110 -12.98647 -12.82770 -12.76970 -12.71709 -12.64589 -12.53391 -12.28488 -12.19430 -11.98052 -11.87097 -11.72498 -11.42578 -11.01086 -10.96227 -10.65217 -10.60657 -9.42296 -9.33018 -8.23302 -6.38544 1.35929 1.40492 1.47842 1.83407 2.27891 2.41742 2.95647 3.06068 3.75901 3.78669 3.88171 3.90118 4.00692 4.15176 4.25066 4.39754 4.43054 4.45286 4.60296 4.63573 4.67998 4.72021 4.74195 4.76733 4.85532 4.90102 4.91605 4.95847 4.99604 5.01299 5.05619 5.13687 5.16177 5.21854 5.25886 5.30175 5.35775 5.50528 5.55366 5.62862 5.83696 6.05267 6.05914 6.16395 6.68596 6.78876 7.27196 7.48024 8.83677 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031421 B = 0.003048 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.901584 B = 9184.320058 C = 9604.060804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 H 0.075 0.925 4 C 0.058 3.942 5 N -0.537 5.537 6 C 0.081 3.919 7 C -0.113 4.113 8 C 0.494 3.506 9 O -0.603 6.603 10 N -0.611 5.611 11 C 0.078 3.922 12 C 0.258 3.742 13 C -0.544 4.544 14 H 0.053 0.947 15 C 0.006 3.994 16 N -0.930 5.930 17 Si 0.969 3.031 18 H -0.278 1.278 19 H -0.278 1.278 20 H -0.259 1.259 21 C 0.045 3.955 22 C -0.106 4.106 23 C -0.089 4.089 24 H 0.060 0.940 25 C -0.142 4.142 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.025 0.975 30 H 0.067 0.933 31 H 0.022 0.978 32 H 0.061 0.939 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.024 0.976 39 H -0.004 1.004 40 H 0.268 0.732 41 H 0.084 0.916 42 H 0.024 0.976 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.448 6.851 -23.221 26.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.097 4.097 3 H 0.093 0.907 4 C -0.070 4.070 5 N -0.261 5.261 6 C -0.048 4.048 7 C -0.153 4.153 8 C 0.283 3.717 9 O -0.485 6.485 10 N -0.342 5.342 11 C -0.064 4.064 12 C 0.136 3.864 13 C -0.583 4.583 14 H 0.072 0.928 15 C -0.193 4.193 16 N -0.569 5.569 17 Si 0.793 3.207 18 H -0.203 1.203 19 H -0.203 1.203 20 H -0.183 1.183 21 C -0.082 4.082 22 C -0.144 4.144 23 C -0.108 4.108 24 H 0.079 0.921 25 C -0.200 4.200 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.084 0.916 38 H 0.042 0.958 39 H 0.014 0.986 40 H 0.076 0.924 41 H 0.103 0.897 42 H 0.043 0.957 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.550 6.944 -22.728 26.423 hybrid contribution -0.084 -0.799 1.487 1.690 sum -11.634 6.144 -21.241 24.986 Atomic orbital electron populations 1.21832 0.94123 1.01906 1.02449 1.21155 0.95787 0.99713 0.93006 0.90677 1.22198 0.86608 0.98788 0.99423 1.61939 1.08453 1.54037 1.01684 1.21589 0.94015 0.97045 0.92129 1.21548 0.96028 1.03756 0.93984 1.21392 0.81924 0.79481 0.88935 1.90631 1.58238 1.47202 1.52403 1.48205 1.07820 1.56783 1.21416 1.21944 0.94288 0.97991 0.92150 1.18752 0.92923 0.93331 0.81366 1.21689 1.42157 0.98344 0.96102 0.92848 1.25893 0.94524 0.97932 1.00929 1.70048 1.42969 1.21547 1.22360 0.85452 0.78473 0.79027 0.77767 1.20331 1.20256 1.18326 1.22291 1.00716 0.94735 0.90489 1.21632 0.95338 1.01548 0.95836 1.21218 0.95423 0.99164 0.94949 0.92115 1.21818 1.01484 1.00241 0.96421 0.92956 0.92688 0.90955 0.95683 0.91427 0.96005 0.92034 0.86651 0.86733 0.91052 0.88646 0.91630 0.95818 0.98615 0.92361 0.89725 0.95739 0.90975 0.90178 0.92204 0.91997 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.91 71.98 0.64 -1.33 16 2 C -0.08 -1.27 2.38 -10.74 -0.03 -1.29 16 3 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 4 C 0.06 1.23 4.74 86.33 0.41 1.64 16 5 N -0.54 -12.42 4.66 -896.36 -4.17 -16.59 16 6 C 0.08 2.38 4.25 86.30 0.37 2.75 16 7 C -0.11 -3.25 4.19 29.85 0.12 -3.13 16 8 C 0.49 21.05 7.67 87.66 0.67 21.73 16 9 O -0.60 -32.27 15.56 -3.05 -0.05 -32.32 16 10 N -0.61 -26.54 2.86 -851.14 -2.43 -28.97 16 11 C 0.08 2.34 10.24 127.77 1.31 3.65 16 12 C 0.26 14.31 5.16 85.63 0.44 14.75 16 13 C -0.54 -32.13 9.39 25.60 0.24 -31.89 16 14 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 15 C 0.01 0.36 5.46 84.66 0.46 0.82 16 16 N -0.93 -57.28 13.29 21.45 0.28 -56.99 16 17 Si 0.97 45.60 29.54 68.60 2.03 47.62 16 18 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 21 C 0.05 0.87 5.29 86.32 0.46 1.32 16 22 C -0.11 -1.56 5.38 30.64 0.16 -1.40 16 23 C -0.09 -1.27 2.28 -10.72 -0.02 -1.29 16 24 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 25 C -0.14 -1.57 8.90 71.98 0.64 -0.93 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.80 6.51 -2.39 -0.02 0.78 16 29 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 1.52 8.01 -2.39 -0.02 1.50 16 31 H 0.02 0.72 8.08 -2.39 -0.02 0.70 16 32 H 0.06 2.06 7.94 -2.39 -0.02 2.04 16 33 H 0.12 2.91 7.40 -2.38 -0.02 2.89 16 34 H 0.11 2.61 6.40 -2.39 -0.02 2.60 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.10 2.16 6.44 -2.39 -0.02 2.15 16 37 H 0.06 2.07 8.07 -2.39 -0.02 2.06 16 38 H 0.02 1.33 8.07 -2.39 -0.02 1.31 16 39 H 0.00 -0.27 7.42 -2.39 -0.02 -0.29 16 40 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 41 H 0.08 1.49 6.22 -2.38 -0.01 1.47 16 42 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 46 H 0.06 0.62 6.52 -2.39 -0.02 0.60 16 47 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -74.07 364.24 2.45 -71.63 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 0.91 Total: 10.22 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 5.88 Total: 5.40 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -6.32 Total: -102.56 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -0.05 Total: -32.32 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -74.07 2.45 -71.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092808594.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.483 kcal (2) G-P(sol) polarization free energy of solvation -74.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds