Wall clock time and date at job start Tue Mar 31 2020 06:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.66941 * 2 1 4 4 C 1.54521 * 109.57225 * 239.69513 * 2 1 3 5 5 C 1.45876 * 111.66644 * 162.95781 * 4 2 1 6 6 C 1.53980 * 112.66762 * 61.49504 * 5 4 2 7 7 N 1.44305 * 108.30828 * 278.58555 * 6 5 4 8 8 C 1.46908 * 110.99760 * 221.35419 * 7 6 5 9 9 C 1.52992 * 109.47301 * 293.95414 * 8 7 6 10 10 C 1.50701 * 109.47357 * 180.02562 * 9 8 7 11 11 O 1.21278 * 119.99688 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99990 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00011 * 359.97438 * 12 10 9 14 14 C 1.46503 * 119.99505 * 179.97438 * 12 10 9 15 15 C 1.50697 * 109.47088 * 90.00003 * 14 12 10 16 16 H 1.07999 * 120.00085 * 359.97438 * 15 14 12 17 17 C 1.37875 * 120.00476 * 179.97438 * 15 14 12 18 18 N 1.31515 * 120.00782 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99297 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46958 * 90.00625 * 19 17 15 21 21 H 1.48504 * 109.47031 * 209.99944 * 19 17 15 22 22 H 1.48490 * 109.47507 * 330.00289 * 19 17 15 23 23 C 1.47939 * 113.64482 * 95.40426 * 7 6 5 24 24 C 1.50532 * 109.56938 * 120.30813 * 2 1 3 25 25 H 1.09001 * 109.47388 * 180.30951 * 1 2 3 26 26 H 1.09001 * 109.47338 * 300.31065 * 1 2 3 27 27 H 1.09001 * 109.47005 * 60.30605 * 1 2 3 28 28 H 1.08998 * 109.03940 * 42.38782 * 4 2 1 29 29 H 1.09002 * 109.03789 * 283.51891 * 4 2 1 30 30 H 1.08997 * 108.84200 * 182.31577 * 5 4 2 31 31 H 1.08996 * 108.83893 * 300.67133 * 5 4 2 32 32 H 1.08988 * 109.69991 * 38.29310 * 6 5 4 33 33 H 1.09004 * 109.69339 * 158.84980 * 6 5 4 34 34 H 1.08991 * 109.47154 * 53.95970 * 8 7 6 35 35 H 1.09006 * 109.46849 * 173.95432 * 8 7 6 36 36 H 1.09003 * 109.47160 * 300.00169 * 9 8 7 37 37 H 1.09006 * 109.47155 * 60.00205 * 9 8 7 38 38 H 1.08993 * 109.47379 * 90.00418 * 13 12 10 39 39 H 1.09002 * 109.46379 * 210.00332 * 13 12 10 40 40 H 1.09002 * 109.47152 * 329.99645 * 13 12 10 41 41 H 1.08997 * 109.46750 * 209.99442 * 14 12 10 42 42 H 1.08993 * 109.47332 * 329.99577 * 14 12 10 43 43 H 0.96996 * 119.99923 * 180.02562 * 18 17 15 44 44 H 1.09002 * 108.71433 * 79.13371 * 23 7 6 45 45 H 1.08996 * 108.71202 * 197.27092 * 23 7 6 46 46 H 1.08998 * 108.79473 * 90.67802 * 24 2 1 47 47 H 1.09007 * 108.70433 * 332.39384 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0476 -0.7347 -1.2570 5 6 3.4493 -0.4286 -1.5207 6 6 4.3787 -0.8695 -0.3749 7 7 4.3377 0.1396 0.6558 8 6 5.6789 0.3907 1.2003 9 6 6.1739 -0.8579 1.9328 10 6 7.5494 -0.6001 2.4919 11 8 8.0816 0.4763 2.3208 12 7 8.1886 -1.5659 3.1811 13 6 7.5461 -2.8662 3.3872 14 6 9.5261 -1.3154 3.7241 15 6 9.4054 -0.7520 5.1166 16 1 8.4301 -0.5958 5.5533 17 6 10.5401 -0.4360 5.8332 18 7 10.4349 0.0551 7.0486 19 14 12.2271 -0.7069 5.0781 20 1 12.6463 0.5180 4.3506 21 1 13.2083 -1.0046 6.1523 22 1 12.1681 -1.8492 4.1312 23 6 3.3731 -0.1562 1.7378 24 6 2.0342 -0.7158 1.2245 25 1 -0.3634 -1.0276 0.0056 26 1 -0.3634 0.5186 0.8872 27 1 -0.3633 0.5091 -0.8927 28 1 1.4497 -0.4327 -2.1168 29 1 1.9398 -1.8094 -1.1103 30 1 3.7541 -0.9356 -2.4362 31 1 3.5537 0.6467 -1.6648 32 1 4.0368 -1.8220 0.0297 33 1 5.3977 -0.9733 -0.7478 34 1 6.3628 0.6294 0.3859 35 1 5.6372 1.2281 1.8969 36 1 5.4899 -1.0965 2.7473 37 1 6.2156 -1.6952 1.2362 38 1 7.8056 -3.5341 2.5659 39 1 7.8900 -3.2963 4.3279 40 1 6.4644 -2.7357 3.4214 41 1 10.0855 -2.2502 3.7576 42 1 10.0489 -0.6017 3.0874 43 1 11.2333 0.2778 7.5525 44 1 3.8197 -0.8843 2.4150 45 1 3.1771 0.7616 2.2920 46 1 2.1633 -1.7715 0.9860 47 1 1.2892 -0.6236 2.0149 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104347521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:30 Heat of formation + Delta-G solvation = -42.653329 kcal Electronic energy + Delta-G solvation = -23055.696650 eV Core-core repulsion = 19852.012948 eV Total energy + Delta-G solvation = -3203.683702 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.87555 -38.83645 -35.91043 -34.89276 -32.87323 -32.56443 -30.93374 -28.88927 -27.91352 -26.15800 -25.65692 -23.99968 -23.07711 -21.80889 -20.31781 -19.41700 -18.34849 -16.97659 -16.72972 -16.29378 -15.49710 -15.35719 -15.16658 -14.63912 -14.42779 -14.09123 -13.66857 -13.43708 -13.35254 -13.05779 -12.83984 -12.65247 -12.36301 -12.31356 -12.11961 -12.03714 -11.96687 -11.46295 -11.34472 -11.02835 -10.96487 -10.84359 -10.69732 -10.67101 -10.52658 -10.48514 -10.40851 -10.15071 -9.55243 -9.03421 -8.59598 -8.18085 -7.71312 -6.09402 -4.08271 3.28757 3.33687 3.34803 3.36543 3.75291 3.97398 4.39077 4.47202 4.64558 4.71205 4.90628 4.97408 5.08776 5.12285 5.16778 5.22873 5.25651 5.32623 5.37704 5.48318 5.49891 5.55178 5.58728 5.65422 5.72932 5.78400 5.81519 5.86374 5.88193 5.96702 6.05206 6.09830 6.13323 6.15655 6.21278 6.33345 6.37355 6.68421 6.93141 7.08229 7.25413 7.32635 7.60395 8.23966 8.46382 8.91887 8.98303 9.50889 11.04052 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036140 B = 0.003196 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.584264 B = 8758.939441 C = 8948.625784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 H 0.081 0.919 4 C -0.108 4.108 5 C -0.115 4.115 6 C 0.060 3.940 7 N -0.543 5.543 8 C 0.076 3.924 9 C -0.177 4.177 10 C 0.509 3.491 11 O -0.541 6.541 12 N -0.600 5.600 13 C 0.085 3.915 14 C 0.215 3.785 15 C -0.529 4.529 16 H 0.073 0.927 17 C 0.072 3.928 18 N -0.898 5.898 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.266 1.266 23 C 0.054 3.946 24 C -0.114 4.114 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.041 0.959 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.044 0.956 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.029 0.971 42 H 0.037 0.963 43 H 0.265 0.735 44 H 0.040 0.960 45 H 0.072 0.928 46 H 0.056 0.944 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.841 -5.548 -15.567 24.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 H 0.099 0.901 4 C -0.146 4.146 5 C -0.153 4.153 6 C -0.069 4.069 7 N -0.266 5.266 8 C -0.052 4.052 9 C -0.218 4.218 10 C 0.296 3.704 11 O -0.418 6.418 12 N -0.332 5.332 13 C -0.059 4.059 14 C 0.094 3.906 15 C -0.567 4.567 16 H 0.092 0.908 17 C -0.131 4.131 18 N -0.536 5.536 19 Si 0.704 3.296 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.191 1.191 23 C -0.073 4.073 24 C -0.152 4.152 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.062 0.938 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.047 0.953 42 H 0.055 0.945 43 H 0.075 0.925 44 H 0.058 0.942 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.607 -4.522 -15.711 24.027 hybrid contribution 1.163 -1.043 0.358 1.603 sum -16.444 -5.565 -15.354 23.175 Atomic orbital electron populations 1.21903 0.95660 1.01366 1.01477 1.20893 0.94493 1.00817 0.94257 0.90051 1.20609 0.96554 0.99769 0.97645 1.20484 0.94882 1.02600 0.97349 1.21813 0.99461 0.93042 0.92558 1.61033 1.07309 1.45457 1.12815 1.22026 0.87790 0.96076 0.99317 1.22391 0.96115 1.01606 1.01721 1.20267 0.87012 0.84292 0.78873 1.90669 1.67864 1.23986 1.59312 1.47875 1.19390 1.12851 1.53079 1.21632 0.97226 0.85368 1.01668 1.19657 0.79177 0.96650 0.95098 1.21325 0.95149 1.42690 0.97571 0.90849 1.24867 0.99060 0.94435 0.94694 1.69896 1.29462 1.43615 1.10663 0.86833 0.84269 0.79336 0.79145 1.19857 1.21053 1.19103 1.22477 0.91775 1.00384 0.92707 1.21467 0.96058 0.99642 0.98041 0.93064 0.92802 0.92904 0.92500 0.92848 0.92566 0.91098 0.94038 0.91416 0.89853 0.89781 0.89223 0.89887 0.93775 0.90594 0.92356 0.95328 0.94550 0.92544 0.94237 0.90940 0.92500 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.91 37.16 0.33 -0.72 16 2 C -0.09 -0.72 2.43 -91.06 -0.22 -0.94 16 3 H 0.08 0.80 7.79 -51.93 -0.40 0.40 16 4 C -0.11 -0.87 4.73 -29.30 -0.14 -1.01 16 5 C -0.11 -1.02 5.37 -29.59 -0.16 -1.17 16 6 C 0.06 0.60 4.39 -4.70 -0.02 0.58 16 7 N -0.54 -6.20 4.18 -234.64 -0.98 -7.18 16 8 C 0.08 1.06 4.41 -3.82 -0.02 1.04 16 9 C -0.18 -2.53 3.75 -27.89 -0.10 -2.63 16 10 C 0.51 10.33 7.67 -10.99 -0.08 10.25 16 11 O -0.54 -13.27 15.56 5.56 0.09 -13.18 16 12 N -0.60 -12.47 2.86 -182.96 -0.52 -12.99 16 13 C 0.09 1.31 10.24 59.85 0.61 1.93 16 14 C 0.21 5.33 4.23 -5.19 -0.02 5.31 16 15 C -0.53 -15.39 9.94 -34.44 -0.34 -15.73 16 16 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 17 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 18 N -0.90 -27.93 13.96 55.43 0.77 -27.15 16 19 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 20 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 23 C 0.05 0.56 5.31 -2.77 -0.01 0.55 16 24 C -0.11 -0.99 4.83 -27.48 -0.13 -1.12 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.37 8.09 -51.93 -0.42 -0.05 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.42 8.02 -51.93 -0.42 0.01 16 29 H 0.05 0.42 7.59 -51.93 -0.39 0.03 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 32 H 0.04 0.40 6.79 -51.94 -0.35 0.05 16 33 H 0.07 0.70 7.25 -51.93 -0.38 0.32 16 34 H 0.08 1.22 7.87 -51.93 -0.41 0.81 16 35 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 36 H 0.09 1.21 5.42 -51.93 -0.28 0.93 16 37 H 0.08 1.02 7.21 -51.93 -0.37 0.65 16 38 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 40 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 41 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 42 H 0.04 0.96 6.85 -51.93 -0.36 0.61 16 43 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 44 H 0.04 0.43 5.73 -51.93 -0.30 0.13 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 0.49 6.66 -51.93 -0.35 0.14 16 47 H 0.07 0.54 7.70 -51.93 -0.40 0.14 16 LS Contribution 354.33 15.07 5.34 5.34 Total: -1.00 -33.13 354.33 -8.88 -42.01 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -8.50 Total: -2.26 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -0.41 Total: -1.67 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -0.73 Total: -47.33 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.18 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.13 -8.88 -42.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104347521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.647 kcal (2) G-P(sol) polarization free energy of solvation -33.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds