Wall clock time and date at job start Tue Mar 31 2020 06:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.66941 * 2 1 4 4 C 1.54521 * 109.57225 * 239.69513 * 2 1 3 5 5 C 1.45876 * 111.66644 * 162.95781 * 4 2 1 6 6 C 1.53980 * 112.66762 * 61.49504 * 5 4 2 7 7 N 1.44305 * 108.30828 * 278.58555 * 6 5 4 8 8 C 1.46908 * 110.99760 * 221.35419 * 7 6 5 9 9 C 1.52992 * 109.47301 * 293.95414 * 8 7 6 10 10 C 1.50701 * 109.47357 * 180.02562 * 9 8 7 11 11 O 1.21278 * 119.99688 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99990 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00011 * 359.97438 * 12 10 9 14 14 C 1.46503 * 119.99505 * 179.97438 * 12 10 9 15 15 C 1.50697 * 109.47088 * 90.00003 * 14 12 10 16 16 H 1.07999 * 120.00085 * 359.97438 * 15 14 12 17 17 C 1.37875 * 120.00476 * 179.97438 * 15 14 12 18 18 N 1.31515 * 120.00782 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99297 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46958 * 90.00625 * 19 17 15 21 21 H 1.48504 * 109.47031 * 209.99944 * 19 17 15 22 22 H 1.48490 * 109.47507 * 330.00289 * 19 17 15 23 23 C 1.47939 * 113.64482 * 95.40426 * 7 6 5 24 24 C 1.50532 * 109.56938 * 120.30813 * 2 1 3 25 25 H 1.09001 * 109.47388 * 180.30951 * 1 2 3 26 26 H 1.09001 * 109.47338 * 300.31065 * 1 2 3 27 27 H 1.09001 * 109.47005 * 60.30605 * 1 2 3 28 28 H 1.08998 * 109.03940 * 42.38782 * 4 2 1 29 29 H 1.09002 * 109.03789 * 283.51891 * 4 2 1 30 30 H 1.08997 * 108.84200 * 182.31577 * 5 4 2 31 31 H 1.08996 * 108.83893 * 300.67133 * 5 4 2 32 32 H 1.08988 * 109.69991 * 38.29310 * 6 5 4 33 33 H 1.09004 * 109.69339 * 158.84980 * 6 5 4 34 34 H 1.08991 * 109.47154 * 53.95970 * 8 7 6 35 35 H 1.09006 * 109.46849 * 173.95432 * 8 7 6 36 36 H 1.09003 * 109.47160 * 300.00169 * 9 8 7 37 37 H 1.09006 * 109.47155 * 60.00205 * 9 8 7 38 38 H 1.08993 * 109.47379 * 90.00418 * 13 12 10 39 39 H 1.09002 * 109.46379 * 210.00332 * 13 12 10 40 40 H 1.09002 * 109.47152 * 329.99645 * 13 12 10 41 41 H 1.08997 * 109.46750 * 209.99442 * 14 12 10 42 42 H 1.08993 * 109.47332 * 329.99577 * 14 12 10 43 43 H 0.96996 * 119.99923 * 180.02562 * 18 17 15 44 44 H 1.09002 * 108.71433 * 79.13371 * 23 7 6 45 45 H 1.08996 * 108.71202 * 197.27092 * 23 7 6 46 46 H 1.08998 * 108.79473 * 90.67802 * 24 2 1 47 47 H 1.09007 * 108.70433 * 332.39384 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0476 -0.7347 -1.2570 5 6 3.4493 -0.4286 -1.5207 6 6 4.3787 -0.8695 -0.3749 7 7 4.3377 0.1396 0.6558 8 6 5.6789 0.3907 1.2003 9 6 6.1739 -0.8579 1.9328 10 6 7.5494 -0.6001 2.4919 11 8 8.0816 0.4763 2.3208 12 7 8.1886 -1.5659 3.1811 13 6 7.5461 -2.8662 3.3872 14 6 9.5261 -1.3154 3.7241 15 6 9.4054 -0.7520 5.1166 16 1 8.4301 -0.5958 5.5533 17 6 10.5401 -0.4360 5.8332 18 7 10.4349 0.0551 7.0486 19 14 12.2271 -0.7069 5.0781 20 1 12.6463 0.5180 4.3506 21 1 13.2083 -1.0046 6.1523 22 1 12.1681 -1.8492 4.1312 23 6 3.3731 -0.1562 1.7378 24 6 2.0342 -0.7158 1.2245 25 1 -0.3634 -1.0276 0.0056 26 1 -0.3634 0.5186 0.8872 27 1 -0.3633 0.5091 -0.8927 28 1 1.4497 -0.4327 -2.1168 29 1 1.9398 -1.8094 -1.1103 30 1 3.7541 -0.9356 -2.4362 31 1 3.5537 0.6467 -1.6648 32 1 4.0368 -1.8220 0.0297 33 1 5.3977 -0.9733 -0.7478 34 1 6.3628 0.6294 0.3859 35 1 5.6372 1.2281 1.8969 36 1 5.4899 -1.0965 2.7473 37 1 6.2156 -1.6952 1.2362 38 1 7.8056 -3.5341 2.5659 39 1 7.8900 -3.2963 4.3279 40 1 6.4644 -2.7357 3.4214 41 1 10.0855 -2.2502 3.7576 42 1 10.0489 -0.6017 3.0874 43 1 11.2333 0.2778 7.5525 44 1 3.8197 -0.8843 2.4150 45 1 3.1771 0.7616 2.2920 46 1 2.1633 -1.7715 0.9860 47 1 1.2892 -0.6236 2.0149 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104347521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:29 Heat of formation + Delta-G solvation = -64.424958 kcal Electronic energy + Delta-G solvation = -23056.640739 eV Core-core repulsion = 19852.012948 eV Total energy + Delta-G solvation = -3204.627791 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.05229 -40.07128 -36.92118 -36.49580 -34.72889 -33.58274 -32.16781 -30.42138 -29.00852 -27.41613 -26.76292 -25.05250 -24.32329 -23.20533 -21.08349 -20.37288 -19.74487 -19.17525 -18.11268 -17.24364 -17.14788 -16.55288 -16.34242 -16.00439 -15.52182 -15.22465 -14.72778 -14.60333 -14.45233 -14.23191 -14.03054 -13.77046 -13.67434 -13.64460 -13.37107 -13.27812 -13.06693 -12.90326 -12.76818 -12.43838 -12.11010 -12.04226 -11.89731 -11.77216 -11.72686 -11.54343 -11.37660 -11.19911 -11.05448 -10.85612 -10.69364 -9.42408 -9.10004 -8.36449 -6.41993 1.31174 1.35611 1.43999 1.76432 2.29034 2.31163 2.94855 2.98175 3.75224 3.78706 3.91439 3.94109 4.02035 4.10834 4.15885 4.31464 4.33793 4.44784 4.49565 4.61725 4.63946 4.71344 4.74480 4.78862 4.83642 4.86068 4.93380 4.94124 4.97377 5.04294 5.08237 5.13942 5.21300 5.22584 5.33518 5.43364 5.46111 5.51941 5.52449 5.58670 5.70890 6.12723 6.20973 6.39505 6.59152 6.66927 7.18862 7.39466 8.80660 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036140 B = 0.003196 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.584264 B = 8758.939441 C = 8948.625784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 H 0.062 0.938 4 C -0.106 4.106 5 C -0.111 4.111 6 C 0.057 3.943 7 N -0.544 5.544 8 C 0.085 3.915 9 C -0.156 4.156 10 C 0.498 3.502 11 O -0.595 6.595 12 N -0.610 5.610 13 C 0.079 3.921 14 C 0.222 3.778 15 C -0.538 4.538 16 H 0.027 0.973 17 C 0.010 3.990 18 N -0.946 5.946 19 Si 0.950 3.050 20 H -0.276 1.276 21 H -0.274 1.274 22 H -0.237 1.237 23 C 0.051 3.949 24 C -0.109 4.109 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.104 0.896 37 H 0.115 0.885 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.050 0.950 42 H 0.018 0.982 43 H 0.269 0.731 44 H 0.040 0.960 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.535 -7.978 -17.532 26.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.104 4.104 3 H 0.080 0.920 4 C -0.144 4.144 5 C -0.149 4.149 6 C -0.071 4.071 7 N -0.267 5.267 8 C -0.044 4.044 9 C -0.197 4.197 10 C 0.287 3.713 11 O -0.476 6.476 12 N -0.341 5.341 13 C -0.063 4.063 14 C 0.100 3.900 15 C -0.577 4.577 16 H 0.045 0.955 17 C -0.188 4.188 18 N -0.586 5.586 19 Si 0.773 3.227 20 H -0.202 1.202 21 H -0.199 1.199 22 H -0.160 1.160 23 C -0.076 4.076 24 C -0.146 4.146 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.122 0.878 37 H 0.133 0.867 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.068 0.932 42 H 0.036 0.964 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.349 -7.004 -17.690 26.433 hybrid contribution 1.270 -0.246 1.009 1.640 sum -17.080 -7.250 -16.681 24.951 Atomic orbital electron populations 1.21866 0.94607 1.01910 1.01681 1.20867 0.95368 0.99733 0.94457 0.91966 1.20594 0.95980 1.00161 0.97648 1.20448 0.95271 1.01755 0.97415 1.21911 0.99850 0.93041 0.92330 1.61029 1.05820 1.46641 1.13196 1.21811 0.89097 0.95173 0.98320 1.22323 0.92139 1.02818 1.02466 1.21307 0.88644 0.83275 0.78078 1.90637 1.69487 1.26166 1.61297 1.48024 1.18407 1.15041 1.52632 1.21943 0.98571 0.83232 1.02602 1.19335 0.81906 0.96660 0.92133 1.21563 0.93328 1.43035 0.99725 0.95510 1.25888 1.03960 0.93933 0.95049 1.70050 1.31043 1.45045 1.12462 0.85683 0.78207 0.80006 0.78850 1.20176 1.19888 1.16045 1.22535 0.92575 0.99995 0.92483 1.21438 0.94957 0.99876 0.98377 0.92280 0.92842 0.92564 0.91782 0.91975 0.91268 0.92599 0.92837 0.91559 0.90900 0.92470 0.87804 0.86665 0.90161 0.91622 0.89572 0.93167 0.96354 0.92207 0.94169 0.92102 0.91628 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.91 71.98 0.64 -1.11 16 2 C -0.09 -1.28 2.43 -11.08 -0.03 -1.30 16 3 H 0.06 1.18 7.79 -2.38 -0.02 1.16 16 4 C -0.11 -1.44 4.73 28.93 0.14 -1.30 16 5 C -0.11 -1.73 5.37 28.74 0.15 -1.57 16 6 C 0.06 1.00 4.39 87.12 0.38 1.39 16 7 N -0.54 -11.86 4.18 -896.26 -3.75 -15.61 16 8 C 0.08 2.35 4.41 86.30 0.38 2.73 16 9 C -0.16 -4.22 3.75 29.85 0.11 -4.11 16 10 C 0.50 20.14 7.67 87.66 0.67 20.82 16 11 O -0.59 -30.11 15.56 -3.02 -0.05 -30.16 16 12 N -0.61 -24.83 2.86 -851.15 -2.43 -27.26 16 13 C 0.08 2.21 10.24 127.77 1.31 3.52 16 14 C 0.22 10.96 4.23 85.63 0.36 11.33 16 15 C -0.54 -32.17 9.94 25.60 0.25 -31.91 16 16 H 0.03 1.79 8.06 -2.91 -0.02 1.76 16 17 C 0.01 0.58 5.47 84.65 0.46 1.04 16 18 N -0.95 -60.51 13.96 21.45 0.30 -60.21 16 19 Si 0.95 44.87 27.47 68.60 1.88 46.75 16 20 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 22 H -0.24 -10.02 6.54 99.48 0.65 -9.37 16 23 C 0.05 1.00 5.31 86.41 0.46 1.46 16 24 C -0.11 -1.65 4.83 30.11 0.15 -1.50 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.05 0.65 8.09 -2.39 -0.02 0.64 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.79 8.02 -2.39 -0.02 0.77 16 29 H 0.06 0.76 7.59 -2.39 -0.02 0.74 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 1.05 8.08 -2.39 -0.02 1.03 16 32 H 0.05 0.84 6.79 -2.39 -0.02 0.82 16 33 H 0.07 1.21 7.25 -2.39 -0.02 1.19 16 34 H 0.07 2.16 7.87 -2.39 -0.02 2.14 16 35 H 0.06 1.88 8.10 -2.38 -0.02 1.86 16 36 H 0.10 2.56 5.42 -2.39 -0.01 2.55 16 37 H 0.12 2.42 7.21 -2.38 -0.02 2.40 16 38 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.06 1.99 8.07 -2.39 -0.02 1.97 16 40 H 0.09 1.93 6.44 -2.39 -0.02 1.92 16 41 H 0.05 2.26 7.13 -2.39 -0.02 2.24 16 42 H 0.02 0.97 6.85 -2.39 -0.02 0.96 16 43 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 44 H 0.04 0.78 5.73 -2.39 -0.01 0.77 16 45 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.07 0.90 6.66 -2.39 -0.02 0.89 16 47 H 0.07 1.03 7.70 -2.38 -0.02 1.01 16 Total: -1.00 -75.56 354.33 2.27 -73.29 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.86 Total: 13.72 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 5.45 Total: -0.54 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -5.88 Total: -103.08 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.05 Total: -30.16 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.75 kcal Total: -75.56 2.27 -73.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104347521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.869 kcal (2) G-P(sol) polarization free energy of solvation -75.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds