Wall clock time and date at job start Tue Mar 31 2020 06:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.57286 * 2 1 4 4 C 1.50461 * 109.57343 * 120.37946 * 2 1 3 5 5 C 1.54290 * 113.03882 * 211.96107 * 4 2 1 6 6 C 1.54063 * 112.28651 * 318.30191 * 5 4 2 7 7 N 1.44274 * 111.97452 * 318.90956 * 6 5 4 8 8 C 1.46898 * 111.00209 * 219.31197 * 7 6 5 9 9 C 1.52999 * 109.46940 * 68.03014 * 8 7 6 10 10 C 1.50696 * 109.47281 * 179.97438 * 9 8 7 11 11 O 1.21276 * 120.00259 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00077 * 179.97438 * 10 9 8 13 13 C 1.46504 * 120.00192 * 0.02562 * 12 10 9 14 14 C 1.46508 * 120.00322 * 180.02562 * 12 10 9 15 15 C 1.50700 * 109.46753 * 89.99873 * 14 12 10 16 16 H 1.07994 * 120.00436 * 0.02562 * 15 14 12 17 17 C 1.37882 * 119.99929 * 180.02562 * 15 14 12 18 18 N 1.31516 * 119.99363 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00280 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46970 * 59.99837 * 19 17 15 21 21 H 1.48501 * 109.47152 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46982 * 299.99827 * 19 17 15 23 23 C 1.47799 * 109.45583 * 96.44677 * 7 6 5 24 24 C 1.45861 * 112.92341 * 276.72998 * 23 7 6 25 25 H 1.09001 * 109.46801 * 180.24891 * 1 2 3 26 26 H 1.09001 * 109.46998 * 300.24488 * 1 2 3 27 27 H 1.09000 * 109.47050 * 60.24779 * 1 2 3 28 28 H 1.09003 * 108.77031 * 332.87609 * 4 2 1 29 29 H 1.09000 * 108.76961 * 91.03971 * 4 2 1 30 30 H 1.08998 * 108.92044 * 197.57479 * 5 4 2 31 31 H 1.09006 * 108.84140 * 78.97268 * 5 4 2 32 32 H 1.09005 * 108.98049 * 198.27428 * 6 5 4 33 33 H 1.09004 * 108.98220 * 79.55466 * 6 5 4 34 34 H 1.08997 * 109.47451 * 188.02880 * 8 7 6 35 35 H 1.09000 * 109.47530 * 308.02936 * 8 7 6 36 36 H 1.09007 * 109.46979 * 300.00230 * 9 8 7 37 37 H 1.09000 * 109.47072 * 59.99642 * 9 8 7 38 38 H 1.08998 * 109.47029 * 89.99836 * 13 12 10 39 39 H 1.09004 * 109.47092 * 209.99841 * 13 12 10 40 40 H 1.09000 * 109.46779 * 329.99741 * 13 12 10 41 41 H 1.09000 * 109.47278 * 209.99872 * 14 12 10 42 42 H 1.08996 * 109.46505 * 330.00388 * 14 12 10 43 43 H 0.97001 * 119.99893 * 179.97438 * 18 17 15 44 44 H 1.08995 * 108.79604 * 155.83804 * 23 7 6 45 45 H 1.09003 * 108.70082 * 37.54999 * 23 7 6 46 46 H 1.09003 * 109.05698 * 300.77814 * 24 23 7 47 47 H 1.09003 * 109.00097 * 181.82589 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0341 -0.7169 1.2230 5 6 3.3714 -0.1522 1.7458 6 6 4.3556 0.1695 0.6050 7 7 4.3448 -0.8460 -0.4198 8 6 5.7022 -1.1067 -0.9171 9 6 6.5301 -1.7712 0.1847 10 6 7.9225 -2.0392 -0.3256 11 8 8.2233 -1.7288 -1.4587 12 7 8.8338 -2.6229 0.4777 13 6 8.4707 -2.9974 1.8467 14 6 10.1877 -2.8829 -0.0182 15 6 11.0659 -1.6930 0.2715 16 1 10.6567 -0.8296 0.7749 17 6 12.3919 -1.7065 -0.1062 18 7 12.8900 -2.7577 -0.7197 19 14 13.4806 -0.2319 0.2535 20 1 13.5275 0.0031 1.7190 21 1 14.8526 -0.4949 -0.2503 22 1 12.9272 0.9687 -0.4230 23 6 3.4496 -0.4270 -1.5187 24 6 2.0477 -0.7334 -1.2576 25 1 -0.3633 -1.0277 0.0045 26 1 -0.3633 0.5176 0.8878 27 1 -0.3633 0.5100 -0.8922 28 1 1.2862 -0.6338 2.0115 29 1 2.1693 -1.7711 0.9808 30 1 3.8286 -0.8848 2.4109 31 1 3.1724 0.7599 2.3086 32 1 5.3621 0.2472 1.0164 33 1 4.0816 1.1258 0.1594 34 1 5.6516 -1.7677 -1.7822 35 1 6.1704 -0.1656 -1.2058 36 1 6.5807 -1.1101 1.0499 37 1 6.0619 -2.7122 0.4734 38 1 8.0812 -4.0153 1.8537 39 1 9.3527 -2.9414 2.4848 40 1 7.7082 -2.3139 2.2201 41 1 10.5938 -3.7638 0.4790 42 1 10.1536 -3.0560 -1.0938 43 1 13.8228 -2.7672 -0.9858 44 1 3.7554 -0.9343 -2.4336 45 1 3.5529 0.6486 -1.6628 46 1 1.9393 -1.8083 -1.1126 47 1 1.4516 -0.4287 -2.1179 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104347524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:33 Heat of formation + Delta-G solvation = -46.665399 kcal Electronic energy + Delta-G solvation = -22935.057610 eV Core-core repulsion = 19731.199931 eV Total energy + Delta-G solvation = -3203.857679 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.75632 -38.75648 -35.71620 -34.73498 -32.68027 -32.60747 -31.31268 -28.63002 -27.52064 -26.12067 -25.57372 -23.51796 -23.41501 -21.73454 -20.51296 -19.47742 -18.25864 -16.69162 -16.48399 -15.93962 -15.29246 -15.27547 -15.07133 -14.76811 -14.63399 -14.13474 -13.81715 -13.43778 -13.31970 -13.11495 -12.51698 -12.38725 -12.28565 -12.14594 -11.94279 -11.76473 -11.71939 -11.51374 -11.20128 -11.07128 -10.89871 -10.75825 -10.71568 -10.61954 -10.50628 -10.49810 -10.25315 -10.14598 -9.62715 -8.86041 -8.42156 -8.33183 -7.60691 -6.02979 -4.07785 3.32080 3.36479 3.38493 3.49635 3.67447 4.18654 4.46080 4.49087 4.69845 4.76505 4.97952 5.08594 5.10958 5.17736 5.23093 5.29589 5.32752 5.37868 5.44009 5.46923 5.55362 5.59382 5.68252 5.70242 5.76725 5.80128 5.90998 5.94396 5.97491 6.07564 6.08545 6.16189 6.16297 6.17604 6.22533 6.25024 6.36067 7.06652 7.09124 7.17286 7.46801 7.57213 7.93534 8.25330 8.46076 8.91746 9.13551 9.57162 11.05085 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032091 B = 0.003112 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.318241 B = 8994.352088 C = 9015.298732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 H 0.065 0.935 4 C -0.104 4.104 5 C -0.108 4.108 6 C 0.048 3.952 7 N -0.530 5.530 8 C 0.073 3.927 9 C -0.134 4.134 10 C 0.504 3.496 11 O -0.546 6.546 12 N -0.604 5.604 13 C 0.085 3.915 14 C 0.245 3.755 15 C -0.526 4.526 16 H 0.056 0.944 17 C 0.060 3.940 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.277 1.277 23 C 0.055 3.945 24 C -0.109 4.109 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.038 0.962 34 H 0.081 0.919 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.044 0.956 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.031 0.969 42 H 0.043 0.957 43 H 0.264 0.736 44 H 0.068 0.932 45 H 0.034 0.966 46 H 0.069 0.931 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.112 3.537 4.797 23.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 H 0.083 0.917 4 C -0.142 4.142 5 C -0.146 4.146 6 C -0.081 4.081 7 N -0.254 5.254 8 C -0.055 4.055 9 C -0.174 4.174 10 C 0.290 3.710 11 O -0.425 6.425 12 N -0.336 5.336 13 C -0.060 4.060 14 C 0.125 3.875 15 C -0.565 4.565 16 H 0.074 0.926 17 C -0.142 4.142 18 N -0.534 5.534 19 Si 0.726 3.274 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.072 4.072 24 C -0.147 4.147 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.049 0.951 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.053 0.947 46 H 0.088 0.912 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.928 3.160 4.324 23.545 hybrid contribution 1.083 1.524 0.022 1.870 sum -21.845 4.684 4.346 22.761 Atomic orbital electron populations 1.21879 0.95472 1.01621 1.01276 1.20919 0.94924 0.99575 0.95365 0.91679 1.21253 0.95742 1.00798 0.96388 1.21918 0.95235 1.00431 0.97030 1.21999 0.99606 0.92817 0.93668 1.61584 1.09511 1.43506 1.10790 1.21876 0.86467 1.00104 0.97038 1.21653 0.93539 1.02715 0.99537 1.20320 0.86308 0.78388 0.85949 1.90660 1.80615 1.51870 1.19308 1.48162 1.13977 1.59083 1.12360 1.21627 1.01055 0.98818 0.84469 1.19275 0.75474 0.96354 0.96354 1.21398 0.94541 1.02080 1.38472 0.92604 1.24943 0.97924 0.96281 0.95003 1.69927 1.14653 1.28929 1.39923 0.86558 0.79379 0.82968 0.78507 1.20253 1.21151 1.20214 1.20996 0.93662 0.98638 0.93940 1.20662 0.95200 1.01359 0.97452 0.92736 0.92944 0.92991 0.93081 0.91481 0.91918 0.92569 0.91482 0.94377 0.90009 0.93944 0.89693 0.88924 0.93746 0.90904 0.92444 0.95055 0.93871 0.92669 0.91329 0.94739 0.91230 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.90 37.16 0.33 -0.69 16 2 C -0.09 -0.74 2.39 -91.09 -0.22 -0.96 16 3 H 0.06 0.58 7.17 -51.93 -0.37 0.21 16 4 C -0.10 -0.91 4.98 -27.32 -0.14 -1.05 16 5 C -0.11 -1.00 6.15 -25.50 -0.16 -1.15 16 6 C 0.05 0.52 4.88 -4.67 -0.02 0.50 16 7 N -0.53 -6.24 4.22 -239.56 -1.01 -7.25 16 8 C 0.07 1.05 4.06 -3.83 -0.02 1.04 16 9 C -0.13 -2.02 4.24 -27.89 -0.12 -2.13 16 10 C 0.50 10.59 7.67 -10.99 -0.08 10.50 16 11 O -0.55 -13.89 15.56 5.56 0.09 -13.80 16 12 N -0.60 -13.04 2.86 -182.95 -0.52 -13.56 16 13 C 0.08 1.36 10.24 59.85 0.61 1.97 16 14 C 0.24 6.53 5.16 -5.19 -0.03 6.51 16 15 C -0.53 -15.16 9.39 -34.44 -0.32 -15.48 16 16 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 19 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 C 0.05 0.57 4.96 -6.71 -0.03 0.54 16 24 C -0.11 -0.96 4.92 -29.32 -0.14 -1.10 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.35 8.10 -51.93 -0.42 -0.07 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.41 7.69 -51.93 -0.40 0.01 16 29 H 0.07 0.66 7.38 -51.93 -0.38 0.27 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.77 5.91 -51.93 -0.31 0.47 16 33 H 0.04 0.41 6.51 -51.93 -0.34 0.07 16 34 H 0.08 1.25 7.74 -51.93 -0.40 0.85 16 35 H 0.04 0.68 8.05 -51.93 -0.42 0.26 16 36 H 0.08 1.16 5.74 -51.92 -0.30 0.86 16 37 H 0.09 1.25 8.11 -51.93 -0.42 0.83 16 38 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 40 H 0.06 0.76 6.44 -51.93 -0.33 0.42 16 41 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 42 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.07 0.73 7.58 -51.93 -0.39 0.34 16 45 H 0.03 0.36 7.23 -51.93 -0.38 -0.01 16 46 H 0.07 0.65 7.59 -51.93 -0.39 0.26 16 47 H 0.06 0.49 8.02 -51.93 -0.42 0.07 16 LS Contribution 359.83 15.07 5.42 5.42 Total: -1.00 -32.43 359.83 -9.30 -41.73 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -8.56 Total: -3.54 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -0.43 Total: 0.15 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -0.80 Total: -47.02 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.09 Total: -13.80 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.43 -9.30 -41.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104347524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.936 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds