Wall clock time and date at job start Tue Mar 31 2020 06:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47206 * 2 1 4 4 C 1.50703 * 109.47013 * 120.00160 * 2 1 3 5 5 O 1.21281 * 120.00017 * 102.39916 * 4 2 1 6 6 N 1.34772 * 119.99517 * 282.40126 * 4 2 1 7 7 C 1.46495 * 120.00469 * 0.02562 * 6 4 2 8 8 C 1.46507 * 120.00029 * 180.02562 * 6 4 2 9 9 C 1.50701 * 109.46850 * 89.99541 * 8 6 4 10 10 H 1.07997 * 120.00428 * 0.02562 * 9 8 6 11 11 C 1.37878 * 119.99855 * 180.02562 * 9 8 6 12 12 N 1.31515 * 120.00044 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99956 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47086 * 60.00383 * 13 11 9 15 15 H 1.48511 * 109.46884 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47076 * 299.99951 * 13 11 9 17 17 N 1.46901 * 109.46780 * 239.99690 * 2 1 3 18 18 C 1.47977 * 111.05976 * 78.14116 * 17 2 1 19 19 C 1.53926 * 113.35990 * 192.20500 * 18 17 2 20 20 C 1.50538 * 112.93490 * 317.73325 * 19 18 17 21 21 C 1.54521 * 108.86024 * 91.75055 * 20 19 18 22 22 H 1.09001 * 109.03735 * 43.31915 * 21 20 19 23 23 C 1.52999 * 108.98123 * 162.22232 * 21 20 19 24 24 C 1.45879 * 111.67677 * 282.75146 * 21 20 19 25 25 C 1.44297 * 111.00235 * 310.69603 * 17 2 1 26 26 H 1.09002 * 109.47528 * 186.26680 * 1 2 3 27 27 H 1.08997 * 109.47349 * 306.26603 * 1 2 3 28 28 H 1.09000 * 109.47040 * 66.26839 * 1 2 3 29 29 H 1.08998 * 109.47636 * 89.99631 * 7 6 4 30 30 H 1.09001 * 109.47138 * 210.00152 * 7 6 4 31 31 H 1.09004 * 109.47042 * 329.99596 * 7 6 4 32 32 H 1.08994 * 109.47261 * 210.00021 * 8 6 4 33 33 H 1.09005 * 109.46494 * 330.00463 * 8 6 4 34 34 H 0.96998 * 120.00397 * 179.97438 * 12 11 9 35 35 H 1.09002 * 108.71736 * 71.19066 * 18 17 2 36 36 H 1.09001 * 108.58456 * 313.12470 * 18 17 2 37 37 H 1.08997 * 108.79463 * 196.84110 * 19 18 17 38 38 H 1.09001 * 108.69721 * 78.56203 * 19 18 17 39 39 H 1.09004 * 109.57291 * 331.94303 * 20 19 18 40 40 H 1.08994 * 109.67365 * 211.62378 * 20 19 18 41 41 H 1.08997 * 109.47160 * 182.13187 * 23 21 20 42 42 H 1.08999 * 109.47528 * 302.13857 * 23 21 20 43 43 H 1.09000 * 109.47015 * 62.13463 * 23 21 20 44 44 H 1.08997 * 108.83905 * 300.67678 * 24 21 20 45 45 H 1.09002 * 108.84325 * 182.31766 * 24 21 20 46 46 H 1.08999 * 109.69154 * 101.64873 * 25 17 2 47 47 H 1.08995 * 109.69837 * 341.10188 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.4471 -1.8471 1.1476 6 7 2.0206 -0.0826 2.4230 7 6 1.5190 1.2901 2.5232 8 6 2.5094 -0.7730 3.6192 9 6 3.9851 -0.5137 3.7809 10 1 4.5066 0.1038 3.0647 11 6 4.6695 -1.0650 4.8434 12 7 4.0345 -1.8175 5.7153 13 14 6.4985 -0.7430 5.0443 14 1 6.7315 0.7166 5.1861 15 1 6.9943 -1.4440 6.2561 16 1 7.2238 -1.2465 3.8503 17 7 2.0196 -0.6926 -1.1994 18 6 1.9293 0.1798 -2.3913 19 6 2.1421 -0.5736 -3.7166 20 6 3.2686 -1.5699 -3.6507 21 6 2.6966 -2.9439 -3.2353 22 1 1.7735 -3.1259 -3.7857 23 6 3.7112 -4.0330 -3.5893 24 6 2.4168 -3.0010 -1.8047 25 6 1.3638 -1.9673 -1.3645 26 1 -0.3634 -1.0215 0.1122 27 1 -0.3634 0.6079 0.8285 28 1 -0.3633 0.4136 -0.9408 29 1 0.4485 1.2719 2.7276 30 1 2.0347 1.8072 3.3325 31 1 1.7008 1.8129 1.5841 32 1 1.9772 -0.4028 4.4953 33 1 2.3380 -1.8445 3.5157 34 1 4.5160 -2.2056 6.4626 35 1 2.6829 0.9630 -2.3094 36 1 0.9434 0.6445 -2.4077 37 1 2.3596 0.1509 -4.5013 38 1 1.2221 -1.1001 -3.9709 39 1 4.0030 -1.2426 -2.9146 40 1 3.7432 -1.6524 -4.6284 41 1 3.2999 -5.0096 -3.3342 42 1 3.9256 -3.9967 -4.6574 43 1 4.6313 -3.8686 -3.0284 44 1 3.3414 -2.8167 -1.2577 45 1 2.0559 -3.9990 -1.5561 46 1 0.5885 -1.8855 -2.1263 47 1 0.9184 -2.2765 -0.4190 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119696882.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:35 Heat of formation + Delta-G solvation = -35.493047 kcal Electronic energy + Delta-G solvation = -24012.804086 eV Core-core repulsion = 20809.430877 eV Total energy + Delta-G solvation = -3203.373209 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.03976 -38.31610 -35.64954 -34.67124 -32.69597 -32.42995 -30.57553 -28.07391 -27.58244 -25.94668 -25.49686 -24.20777 -23.35711 -21.88768 -19.92535 -19.43257 -18.17555 -16.74248 -16.37425 -16.06247 -15.19402 -15.03812 -14.56415 -14.52483 -14.26470 -13.83037 -13.64248 -13.36739 -13.13871 -12.71537 -12.58793 -12.32849 -12.20124 -11.97875 -11.82746 -11.73433 -11.62702 -11.33673 -11.18042 -11.04704 -10.98724 -10.80550 -10.56961 -10.47342 -10.31518 -10.17959 -10.12263 -10.07650 -9.56942 -8.68844 -8.38361 -7.86724 -7.54251 -5.99270 -4.03481 3.35447 3.39660 3.41786 3.50581 3.80005 4.30200 4.50813 4.70706 4.89324 4.96257 5.03861 5.15968 5.23327 5.24523 5.34726 5.35962 5.39750 5.46616 5.60626 5.68507 5.72689 5.77873 5.82318 5.88448 5.90429 5.93102 5.98319 6.02336 6.03207 6.12511 6.15777 6.28327 6.37160 6.40890 6.49049 6.57585 6.87489 7.06696 7.31319 7.50310 7.53943 7.62797 7.97892 8.29562 8.51670 8.97037 9.22556 9.61596 11.08728 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017592 B = 0.004907 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.285372 B = 5704.570601 C = 6537.840249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.065 3.935 3 H 0.096 0.904 4 C 0.513 3.487 5 O -0.523 6.523 6 N -0.604 5.604 7 C 0.083 3.917 8 C 0.248 3.752 9 C -0.523 4.523 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.897 5.897 13 Si 0.897 3.103 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.276 1.276 17 N -0.525 5.525 18 C 0.063 3.937 19 C -0.115 4.115 20 C -0.108 4.108 21 C -0.085 4.085 22 H 0.056 0.944 23 C -0.147 4.147 24 C -0.106 4.106 25 C 0.076 3.924 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.030 0.970 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.069 0.931 36 H 0.030 0.970 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.048 0.952 43 H 0.056 0.944 44 H 0.080 0.920 45 H 0.053 0.947 46 H 0.028 0.972 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.496 4.352 -17.345 19.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.047 4.047 3 H 0.114 0.886 4 C 0.298 3.702 5 O -0.398 6.398 6 N -0.337 5.337 7 C -0.061 4.061 8 C 0.129 3.871 9 C -0.562 4.562 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.536 5.536 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 N -0.249 5.249 18 C -0.064 4.064 19 C -0.153 4.153 20 C -0.145 4.145 21 C -0.103 4.103 22 H 0.074 0.926 23 C -0.205 4.205 24 C -0.144 4.144 25 C -0.052 4.052 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.048 0.952 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.098 0.902 45 H 0.071 0.929 46 H 0.047 0.953 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.767 3.519 -17.140 18.761 hybrid contribution 0.182 0.516 0.149 0.567 sum -6.586 4.036 -16.991 18.665 Atomic orbital electron populations 1.22378 0.95832 1.03093 1.02363 1.21668 0.93703 0.98598 0.90689 0.88623 1.20037 0.79347 0.87023 0.83772 1.90647 1.46075 1.18251 1.84848 1.48124 1.62052 1.13993 1.09562 1.21662 0.98027 0.84391 1.02006 1.19239 0.94035 0.93652 0.80200 1.21406 0.94023 1.31112 1.09655 0.92548 1.24924 0.98479 0.94966 0.95714 1.69923 1.36334 1.33127 1.14199 0.86575 0.85241 0.78222 0.77477 1.20308 1.21229 1.20178 1.60469 1.59332 1.03676 1.01456 1.22402 0.99600 0.95180 0.89254 1.21338 0.99359 0.98569 0.96024 1.21364 0.98034 0.94225 1.00906 1.20175 0.97928 0.94789 0.97427 0.92599 1.21901 0.99639 0.98359 1.00568 1.20430 1.01282 0.97778 0.94905 1.21703 0.94391 0.88857 1.00200 0.91784 0.91374 0.92163 0.93928 0.90884 0.92590 0.95223 0.93936 0.92746 0.91276 0.95160 0.91811 0.92528 0.90614 0.92687 0.93030 0.93320 0.92516 0.90163 0.92852 0.95340 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.23 8.43 37.16 0.31 -1.92 16 2 C 0.07 1.01 1.90 -68.86 -0.13 0.87 16 3 H 0.10 1.35 6.26 -51.93 -0.33 1.02 16 4 C 0.51 10.70 6.64 -10.99 -0.07 10.62 16 5 O -0.52 -13.00 14.16 5.56 0.08 -12.93 16 6 N -0.60 -12.89 2.86 -182.95 -0.52 -13.41 16 7 C 0.08 1.33 9.43 59.84 0.56 1.89 16 8 C 0.25 6.56 5.16 -5.19 -0.03 6.53 16 9 C -0.52 -15.06 9.39 -34.44 -0.32 -15.38 16 10 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 13 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 17 N -0.53 -7.86 3.74 -228.01 -0.85 -8.71 16 18 C 0.06 0.73 5.27 -2.75 -0.01 0.72 16 19 C -0.12 -1.19 5.28 -27.48 -0.15 -1.33 16 20 C -0.11 -1.23 4.98 -27.16 -0.14 -1.37 16 21 C -0.08 -1.02 2.28 -93.19 -0.21 -1.23 16 22 H 0.06 0.63 7.59 -51.93 -0.39 0.24 16 23 C -0.15 -1.65 9.02 37.16 0.34 -1.32 16 24 C -0.11 -1.58 4.49 -29.59 -0.13 -1.71 16 25 C 0.08 1.14 3.40 -4.70 -0.02 1.12 16 26 H 0.06 0.87 6.52 -51.93 -0.34 0.53 16 27 H 0.07 0.79 6.72 -51.93 -0.35 0.44 16 28 H 0.06 0.64 6.76 -51.93 -0.35 0.29 16 29 H 0.04 0.58 7.58 -51.93 -0.39 0.19 16 30 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 31 H 0.06 0.74 5.99 -51.93 -0.31 0.43 16 32 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 33 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.03 0.32 6.63 -51.93 -0.34 -0.02 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.57 6.65 -51.93 -0.35 0.23 16 39 H 0.08 1.03 7.79 -51.93 -0.40 0.63 16 40 H 0.05 0.55 7.99 -51.93 -0.42 0.14 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.47 8.10 -51.93 -0.42 0.05 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 1.47 8.08 -51.93 -0.42 1.05 16 45 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 46 H 0.03 0.37 6.79 -51.93 -0.35 0.02 16 47 H 0.08 1.34 5.03 -51.93 -0.26 1.08 16 LS Contribution 350.88 15.07 5.29 5.29 Total: -1.00 -32.27 350.88 -8.69 -40.96 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -8.31 Total: -1.36 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -0.09 Total: -0.83 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: -0.64 Total: -48.35 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.08 Total: -12.93 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.27 -8.69 -40.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119696882.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.470 kcal (2) G-P(sol) polarization free energy of solvation -32.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds