Wall clock time and date at job start Tue Mar 31 2020 06:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47488 * 2 1 4 4 C 1.50708 * 109.47246 * 120.00094 * 2 1 3 5 5 O 1.21285 * 119.99826 * 119.99774 * 4 2 1 6 6 N 1.34774 * 119.99790 * 299.99951 * 4 2 1 7 7 C 1.46498 * 120.00292 * 359.97438 * 6 4 2 8 8 C 1.46501 * 119.99410 * 179.97438 * 6 4 2 9 9 C 1.50698 * 109.47227 * 90.00201 * 8 6 4 10 10 H 1.07999 * 119.99958 * 359.97438 * 9 8 6 11 11 C 1.37874 * 119.99960 * 179.97438 * 9 8 6 12 12 N 1.31523 * 119.99721 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00188 * 359.97438 * 11 9 8 14 14 H 1.48497 * 109.47061 * 90.00353 * 13 11 9 15 15 H 1.48503 * 109.47096 * 210.00412 * 13 11 9 16 16 H 1.48502 * 109.47029 * 330.00196 * 13 11 9 17 17 N 1.46902 * 109.46818 * 239.99848 * 2 1 3 18 18 C 1.47799 * 110.99892 * 71.06500 * 17 2 1 19 19 C 1.45860 * 112.91892 * 153.86354 * 18 17 2 20 20 C 1.54513 * 111.59195 * 61.32709 * 19 18 17 21 21 C 1.50457 * 108.85325 * 282.80886 * 20 19 18 22 22 H 1.09001 * 108.76839 * 331.23375 * 21 20 19 23 23 C 1.53000 * 108.77165 * 213.06710 * 21 20 19 24 24 C 1.54296 * 113.03666 * 92.15127 * 21 20 19 25 25 C 1.44269 * 111.00426 * 309.08176 * 17 2 1 26 26 H 1.09007 * 109.46832 * 307.61323 * 1 2 3 27 27 H 1.09000 * 109.47274 * 67.61624 * 1 2 3 28 28 H 1.08996 * 109.47083 * 187.62145 * 1 2 3 29 29 H 1.08999 * 109.47067 * 90.00047 * 7 6 4 30 30 H 1.08998 * 109.46902 * 210.00208 * 7 6 4 31 31 H 1.09008 * 109.46697 * 329.99913 * 7 6 4 32 32 H 1.09000 * 109.46560 * 209.99829 * 8 6 4 33 33 H 1.08998 * 109.47308 * 329.99664 * 8 6 4 34 34 H 0.96995 * 119.99404 * 179.97438 * 12 11 9 35 35 H 1.09004 * 108.79579 * 274.75366 * 18 17 2 36 36 H 1.09000 * 108.79359 * 33.09071 * 18 17 2 37 37 H 1.09008 * 109.05652 * 181.87169 * 19 18 17 38 38 H 1.09000 * 109.05875 * 300.78474 * 19 18 17 39 39 H 1.09003 * 109.56847 * 42.61776 * 20 19 18 40 40 H 1.08991 * 109.57353 * 162.86752 * 20 19 18 41 41 H 1.09001 * 109.46750 * 60.00049 * 23 21 20 42 42 H 1.08998 * 109.46943 * 179.97438 * 23 21 20 43 43 H 1.08995 * 109.47081 * 300.00237 * 23 21 20 44 44 H 1.08995 * 108.91610 * 79.02067 * 24 21 20 45 45 H 1.08998 * 108.91516 * 197.58072 * 24 21 20 46 46 H 1.09000 * 108.97767 * 339.95450 * 25 17 2 47 47 H 1.08994 * 108.97675 * 98.66035 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.7297 -1.6966 1.1192 6 7 1.7068 -0.2500 2.4546 7 6 0.8650 0.9414 2.5891 8 6 2.1948 -0.9410 3.6507 9 6 3.5225 -0.3581 4.0611 10 1 3.9593 0.4463 3.4880 11 6 4.1794 -0.8518 5.1682 12 7 5.3384 -0.3433 5.5260 13 14 3.4235 -2.2427 6.1598 14 1 3.8825 -3.5455 5.6148 15 1 3.8439 -2.1241 7.5791 16 1 1.9430 -2.1641 6.0739 17 7 2.0196 -0.6925 -1.1995 18 6 1.7740 0.1134 -2.4137 19 6 2.7149 -0.1787 -3.4894 20 6 2.6185 -1.6521 -3.9445 21 6 3.3233 -2.5193 -2.9371 22 1 4.1161 -1.9374 -2.4671 23 6 3.9548 -3.7071 -3.6660 24 6 2.3821 -3.0548 -1.8379 25 6 1.3914 -1.9832 -1.3440 26 1 -0.3633 0.6273 0.8141 27 1 -0.3634 0.3913 -0.9502 28 1 -0.3633 -1.0186 0.1363 29 1 -0.1830 0.6439 2.6222 30 1 1.1230 1.4666 3.5087 31 1 1.0290 1.6002 1.7362 32 1 1.4767 -0.8154 4.4611 33 1 2.3154 -2.0023 3.4334 34 1 5.8004 -0.6904 6.3051 35 1 0.7625 -0.0851 -2.7684 36 1 1.8543 1.1696 -2.1564 37 1 2.4985 0.4708 -4.3377 38 1 3.7280 0.0202 -3.1398 39 1 1.5709 -1.9462 -4.0102 40 1 3.0911 -1.7645 -4.9202 41 1 4.6694 -3.3423 -4.4038 42 1 4.4694 -4.3433 -2.9460 43 1 3.1760 -4.2814 -4.1675 44 1 1.8197 -3.8997 -2.2351 45 1 2.9822 -3.3969 -0.9947 46 1 0.9881 -2.2911 -0.3793 47 1 0.5727 -1.9009 -2.0588 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119697014.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:38 Heat of formation + Delta-G solvation = -26.349531 kcal Electronic energy + Delta-G solvation = -24060.712946 eV Core-core repulsion = 20857.736229 eV Total energy + Delta-G solvation = -3202.976717 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.21790 -38.39528 -35.53813 -34.86827 -32.85680 -32.49081 -30.80747 -28.42024 -27.62028 -26.25684 -25.58908 -24.14185 -23.13527 -21.86793 -20.26742 -19.24483 -18.15669 -16.92392 -16.57678 -16.06384 -15.35112 -15.15386 -14.73002 -14.64620 -14.28169 -13.79312 -13.55816 -13.45100 -13.19205 -12.87378 -12.54228 -12.49865 -12.36322 -12.22500 -11.96317 -11.93192 -11.65904 -11.44485 -11.17936 -11.13520 -10.87159 -10.80232 -10.61898 -10.48994 -10.28226 -10.21625 -10.11313 -10.06029 -9.49575 -8.81958 -8.55650 -8.08145 -7.62713 -6.05353 -4.03634 3.30955 3.36775 3.38712 3.43556 3.63566 4.19558 4.42302 4.71419 4.86788 4.98879 5.02823 5.15562 5.19095 5.21788 5.28176 5.33148 5.33888 5.48542 5.54698 5.59613 5.62746 5.72335 5.73725 5.82781 5.83906 5.89878 5.94457 5.97810 6.03614 6.05366 6.13632 6.22130 6.28556 6.38368 6.39787 6.64325 6.71560 6.72581 6.96303 7.19460 7.34319 7.41409 7.64988 8.32140 8.51316 8.98146 9.09354 9.55267 11.08237 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020423 B = 0.004760 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.651164 B = 5881.392064 C = 6559.179403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.065 3.935 3 H 0.102 0.898 4 C 0.513 3.487 5 O -0.518 6.518 6 N -0.600 5.600 7 C 0.083 3.917 8 C 0.218 3.782 9 C -0.526 4.526 10 H 0.074 0.926 11 C 0.072 3.928 12 N -0.898 5.898 13 Si 0.876 3.124 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.267 1.267 17 N -0.503 5.503 18 C 0.058 3.942 19 C -0.116 4.116 20 C -0.108 4.108 21 C -0.084 4.084 22 H 0.076 0.924 23 C -0.148 4.148 24 C -0.099 4.099 25 C 0.068 3.932 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.028 0.972 33 H 0.035 0.965 34 H 0.264 0.736 35 H 0.034 0.966 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.047 0.953 44 H 0.050 0.950 45 H 0.072 0.928 46 H 0.066 0.934 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.525 0.588 -17.162 20.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.047 4.047 3 H 0.119 0.881 4 C 0.298 3.702 5 O -0.393 6.393 6 N -0.333 5.333 7 C -0.061 4.061 8 C 0.097 3.903 9 C -0.565 4.565 10 H 0.092 0.908 11 C -0.130 4.130 12 N -0.537 5.537 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.191 1.191 17 N -0.226 5.226 18 C -0.069 4.069 19 C -0.154 4.154 20 C -0.146 4.146 21 C -0.103 4.103 22 H 0.095 0.905 23 C -0.206 4.206 24 C -0.137 4.137 25 C -0.061 4.061 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -10.476 -0.042 -17.007 19.975 hybrid contribution -1.099 -0.412 0.631 1.333 sum -11.575 -0.454 -16.375 20.058 Atomic orbital electron populations 1.22678 0.95949 1.03267 1.03036 1.21754 0.93642 0.98847 0.90460 0.88060 1.20084 0.81027 0.85267 0.83821 1.90662 1.36444 1.26299 1.85848 1.47795 1.50393 1.28465 1.06686 1.21783 0.93477 0.88080 1.02778 1.19620 0.95223 0.93642 0.81790 1.21341 1.03077 1.20233 1.11829 0.90782 1.24859 0.94638 0.96446 0.97088 1.69904 1.14820 1.42411 1.26562 0.86852 0.79977 0.83350 0.79494 1.19937 1.21118 1.19140 1.61369 1.58163 1.02606 1.00459 1.21005 0.97660 0.97446 0.90771 1.20606 1.01117 0.96680 0.97017 1.21409 1.00444 0.94668 0.98074 1.20809 0.98573 0.95936 0.94948 0.90537 1.21967 1.00101 0.98518 0.99990 1.21913 0.97392 0.96236 0.98195 1.21798 0.94647 0.89700 0.99946 0.90408 0.92115 0.92021 0.93616 0.90732 0.92157 0.95419 0.94673 0.92621 0.94817 0.91696 0.92018 0.91045 0.92564 0.92314 0.93195 0.92859 0.93372 0.93138 0.90924 0.91600 0.95260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.22 8.09 37.16 0.30 -1.92 16 2 C 0.07 0.97 1.86 -68.86 -0.13 0.85 16 3 H 0.10 1.43 7.01 -51.93 -0.36 1.06 16 4 C 0.51 10.44 6.45 -10.98 -0.07 10.37 16 5 O -0.52 -12.68 14.76 5.55 0.08 -12.60 16 6 N -0.60 -12.32 2.86 -182.95 -0.52 -12.85 16 7 C 0.08 1.25 8.79 59.85 0.53 1.78 16 8 C 0.22 5.37 4.23 -5.19 -0.02 5.35 16 9 C -0.53 -15.30 9.94 -34.44 -0.34 -15.64 16 10 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 11 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 12 N -0.90 -28.04 13.96 55.43 0.77 -27.26 16 13 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 14 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 16 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 17 N -0.50 -7.36 3.89 -232.94 -0.91 -8.27 16 18 C 0.06 0.66 4.21 -6.71 -0.03 0.64 16 19 C -0.12 -1.23 5.53 -29.32 -0.16 -1.40 16 20 C -0.11 -1.15 5.10 -27.21 -0.14 -1.29 16 21 C -0.08 -1.07 2.32 -91.21 -0.21 -1.28 16 22 H 0.08 1.15 7.38 -51.93 -0.38 0.77 16 23 C -0.15 -1.65 8.80 37.16 0.33 -1.32 16 24 C -0.10 -1.41 5.51 -25.49 -0.14 -1.55 16 25 C 0.07 0.97 3.23 -4.67 -0.02 0.95 16 26 H 0.08 0.82 4.78 -51.93 -0.25 0.57 16 27 H 0.06 0.60 7.06 -51.93 -0.37 0.23 16 28 H 0.06 0.77 6.67 -51.93 -0.35 0.43 16 29 H 0.05 0.57 7.12 -51.93 -0.37 0.20 16 30 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 31 H 0.06 0.76 5.92 -51.92 -0.31 0.45 16 32 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 33 H 0.04 0.93 6.85 -51.93 -0.36 0.57 16 34 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 35 H 0.03 0.35 6.77 -51.93 -0.35 0.00 16 36 H 0.06 0.68 7.56 -51.93 -0.39 0.29 16 37 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 38 H 0.07 0.86 7.59 -51.93 -0.39 0.46 16 39 H 0.06 0.59 7.15 -51.93 -0.37 0.22 16 40 H 0.06 0.56 7.69 -51.93 -0.40 0.16 16 41 H 0.05 0.50 8.07 -51.93 -0.42 0.08 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.05 0.63 7.98 -51.93 -0.41 0.22 16 45 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 46 H 0.07 1.07 5.37 -51.93 -0.28 0.80 16 47 H 0.03 0.37 6.51 -51.93 -0.34 0.03 16 LS Contribution 344.82 15.07 5.20 5.20 Total: -1.00 -33.47 344.82 -8.42 -41.89 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -8.17 Total: -0.80 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -0.20 Total: -2.45 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: -0.66 Total: -48.38 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.08 Total: -12.60 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.47 -8.42 -41.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119697014.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.538 kcal (2) G-P(sol) polarization free energy of solvation -33.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds