Wall clock time and date at job start Tue Mar 31 2020 06:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47488 * 2 1 4 4 C 1.50708 * 109.47246 * 120.00094 * 2 1 3 5 5 O 1.21285 * 119.99826 * 119.99774 * 4 2 1 6 6 N 1.34774 * 119.99790 * 299.99951 * 4 2 1 7 7 C 1.46498 * 120.00292 * 359.97438 * 6 4 2 8 8 C 1.46501 * 119.99410 * 179.97438 * 6 4 2 9 9 C 1.50698 * 109.47227 * 90.00201 * 8 6 4 10 10 H 1.07999 * 119.99958 * 359.97438 * 9 8 6 11 11 C 1.37874 * 119.99960 * 179.97438 * 9 8 6 12 12 N 1.31523 * 119.99721 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00188 * 359.97438 * 11 9 8 14 14 H 1.48497 * 109.47061 * 90.00353 * 13 11 9 15 15 H 1.48503 * 109.47096 * 210.00412 * 13 11 9 16 16 H 1.48502 * 109.47029 * 330.00196 * 13 11 9 17 17 N 1.46902 * 109.46818 * 239.99848 * 2 1 3 18 18 C 1.47799 * 110.99892 * 71.06500 * 17 2 1 19 19 C 1.45860 * 112.91892 * 153.86354 * 18 17 2 20 20 C 1.54513 * 111.59195 * 61.32709 * 19 18 17 21 21 C 1.50457 * 108.85325 * 282.80886 * 20 19 18 22 22 H 1.09001 * 108.76839 * 331.23375 * 21 20 19 23 23 C 1.53000 * 108.77165 * 213.06710 * 21 20 19 24 24 C 1.54296 * 113.03666 * 92.15127 * 21 20 19 25 25 C 1.44269 * 111.00426 * 309.08176 * 17 2 1 26 26 H 1.09007 * 109.46832 * 307.61323 * 1 2 3 27 27 H 1.09000 * 109.47274 * 67.61624 * 1 2 3 28 28 H 1.08996 * 109.47083 * 187.62145 * 1 2 3 29 29 H 1.08999 * 109.47067 * 90.00047 * 7 6 4 30 30 H 1.08998 * 109.46902 * 210.00208 * 7 6 4 31 31 H 1.09008 * 109.46697 * 329.99913 * 7 6 4 32 32 H 1.09000 * 109.46560 * 209.99829 * 8 6 4 33 33 H 1.08998 * 109.47308 * 329.99664 * 8 6 4 34 34 H 0.96995 * 119.99404 * 179.97438 * 12 11 9 35 35 H 1.09004 * 108.79579 * 274.75366 * 18 17 2 36 36 H 1.09000 * 108.79359 * 33.09071 * 18 17 2 37 37 H 1.09008 * 109.05652 * 181.87169 * 19 18 17 38 38 H 1.09000 * 109.05875 * 300.78474 * 19 18 17 39 39 H 1.09003 * 109.56847 * 42.61776 * 20 19 18 40 40 H 1.08991 * 109.57353 * 162.86752 * 20 19 18 41 41 H 1.09001 * 109.46750 * 60.00049 * 23 21 20 42 42 H 1.08998 * 109.46943 * 179.97438 * 23 21 20 43 43 H 1.08995 * 109.47081 * 300.00237 * 23 21 20 44 44 H 1.08995 * 108.91610 * 79.02067 * 24 21 20 45 45 H 1.08998 * 108.91516 * 197.58072 * 24 21 20 46 46 H 1.09000 * 108.97767 * 339.95450 * 25 17 2 47 47 H 1.08994 * 108.97675 * 98.66035 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.7297 -1.6966 1.1192 6 7 1.7068 -0.2500 2.4546 7 6 0.8650 0.9414 2.5891 8 6 2.1948 -0.9410 3.6507 9 6 3.5225 -0.3581 4.0611 10 1 3.9593 0.4463 3.4880 11 6 4.1794 -0.8518 5.1682 12 7 5.3384 -0.3433 5.5260 13 14 3.4235 -2.2427 6.1598 14 1 3.8825 -3.5455 5.6148 15 1 3.8439 -2.1241 7.5791 16 1 1.9430 -2.1641 6.0739 17 7 2.0196 -0.6925 -1.1995 18 6 1.7740 0.1134 -2.4137 19 6 2.7149 -0.1787 -3.4894 20 6 2.6185 -1.6521 -3.9445 21 6 3.3233 -2.5193 -2.9371 22 1 4.1161 -1.9374 -2.4671 23 6 3.9548 -3.7071 -3.6660 24 6 2.3821 -3.0548 -1.8379 25 6 1.3914 -1.9832 -1.3440 26 1 -0.3633 0.6273 0.8141 27 1 -0.3634 0.3913 -0.9502 28 1 -0.3633 -1.0186 0.1363 29 1 -0.1830 0.6439 2.6222 30 1 1.1230 1.4666 3.5087 31 1 1.0290 1.6002 1.7362 32 1 1.4767 -0.8154 4.4611 33 1 2.3154 -2.0023 3.4334 34 1 5.8004 -0.6904 6.3051 35 1 0.7625 -0.0851 -2.7684 36 1 1.8543 1.1696 -2.1564 37 1 2.4985 0.4708 -4.3377 38 1 3.7280 0.0202 -3.1398 39 1 1.5709 -1.9462 -4.0102 40 1 3.0911 -1.7645 -4.9202 41 1 4.6694 -3.3423 -4.4038 42 1 4.4694 -4.3433 -2.9460 43 1 3.1760 -4.2814 -4.1675 44 1 1.8197 -3.8997 -2.2351 45 1 2.9822 -3.3969 -0.9947 46 1 0.9881 -2.2911 -0.3793 47 1 0.5727 -1.9009 -2.0588 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119697014.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:37 Heat of formation + Delta-G solvation = -49.472515 kcal Electronic energy + Delta-G solvation = -24061.715634 eV Core-core repulsion = 20857.736229 eV Total energy + Delta-G solvation = -3203.979404 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.47770 -39.70005 -36.71871 -36.50462 -34.73111 -33.72323 -32.09248 -30.12416 -28.72425 -27.59853 -26.60189 -25.56283 -24.39943 -23.37771 -21.24576 -20.50914 -19.50307 -19.13928 -17.91727 -17.37314 -16.67886 -16.49497 -16.31678 -15.83929 -15.46556 -15.27306 -14.77714 -14.64453 -14.48459 -14.23429 -13.91231 -13.67483 -13.58930 -13.43151 -13.35079 -13.26909 -12.93367 -12.82067 -12.59008 -12.45278 -12.24299 -12.14252 -11.98162 -11.81376 -11.74289 -11.55134 -11.25467 -11.17855 -11.08719 -10.83861 -10.39864 -9.34593 -9.10924 -8.34549 -6.39257 1.30720 1.35448 1.43625 1.89320 2.25972 2.30170 2.99856 3.02977 3.64630 3.81729 3.98117 4.00740 4.10836 4.16882 4.27984 4.31821 4.40054 4.42267 4.59669 4.61752 4.64687 4.68043 4.73955 4.82548 4.84810 4.87329 4.88007 4.94496 4.97756 4.98837 5.08305 5.12458 5.19385 5.21627 5.32647 5.44478 5.46285 5.49784 5.57391 5.65654 5.68463 6.13161 6.26319 6.33589 6.62147 6.78243 7.22143 7.52801 8.82779 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020423 B = 0.004760 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.651164 B = 5881.392064 C = 6559.179403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.076 3.924 3 H 0.113 0.887 4 C 0.500 3.500 5 O -0.573 6.573 6 N -0.610 5.610 7 C 0.076 3.924 8 C 0.227 3.773 9 C -0.534 4.534 10 H 0.026 0.974 11 C 0.010 3.990 12 N -0.947 5.947 13 Si 0.949 3.051 14 H -0.279 1.279 15 H -0.274 1.274 16 H -0.237 1.237 17 N -0.531 5.531 18 C 0.057 3.943 19 C -0.116 4.116 20 C -0.103 4.103 21 C -0.080 4.080 22 H 0.041 0.959 23 C -0.145 4.145 24 C -0.099 4.099 25 C 0.075 3.925 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.015 0.985 34 H 0.268 0.732 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.037 0.963 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.025 0.975 46 H 0.038 0.962 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.784 1.053 -18.867 23.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.036 4.036 3 H 0.131 0.869 4 C 0.288 3.712 5 O -0.452 6.452 6 N -0.342 5.342 7 C -0.066 4.066 8 C 0.104 3.896 9 C -0.573 4.573 10 H 0.044 0.956 11 C -0.188 4.188 12 N -0.587 5.587 13 Si 0.772 3.228 14 H -0.205 1.205 15 H -0.199 1.199 16 H -0.160 1.160 17 N -0.255 5.255 18 C -0.069 4.069 19 C -0.154 4.154 20 C -0.140 4.140 21 C -0.099 4.099 22 H 0.060 0.940 23 C -0.203 4.203 24 C -0.137 4.137 25 C -0.054 4.054 26 H 0.111 0.889 27 H 0.108 0.892 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.033 0.967 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.044 0.956 46 H 0.057 0.943 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.780 0.475 -18.731 23.259 hybrid contribution 0.016 -0.501 1.113 1.220 sum -13.765 -0.025 -17.618 22.358 Atomic orbital electron populations 1.22611 0.92687 1.03253 1.05259 1.21666 0.95979 0.98063 0.87873 0.86916 1.21230 0.79959 0.84810 0.85248 1.90634 1.38895 1.28895 1.86772 1.47916 1.50824 1.29781 1.05674 1.22114 0.94400 0.86486 1.03593 1.19265 0.93525 0.92619 0.84166 1.21574 1.05148 1.19149 1.11390 0.95584 1.25867 0.95042 0.99398 0.98475 1.70061 1.16669 1.44419 1.27566 0.85699 0.80695 0.78672 0.77755 1.20458 1.19859 1.16022 1.61290 1.59293 1.03285 1.01653 1.21110 0.98902 0.97479 0.89391 1.20630 0.99772 0.97200 0.97789 1.21377 1.00797 0.94080 0.97791 1.20750 0.97518 0.96540 0.95056 0.94008 1.21943 1.00682 0.97864 0.99773 1.21898 0.97429 0.97194 0.97196 1.21705 0.95016 0.89561 0.99108 0.88896 0.89230 0.93005 0.89943 0.91789 0.89348 0.93269 0.96742 0.92309 0.92639 0.90574 0.89152 0.93310 0.91454 0.90701 0.92002 0.94412 0.91674 0.91427 0.95569 0.94303 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.57 8.09 71.98 0.58 -2.99 16 2 C 0.08 2.17 1.86 44.17 0.08 2.25 16 3 H 0.11 2.94 7.01 -2.39 -0.02 2.93 16 4 C 0.50 20.72 6.45 87.66 0.57 21.28 16 5 O -0.57 -29.73 14.76 -3.04 -0.04 -29.77 16 6 N -0.61 -25.02 2.86 -851.12 -2.43 -27.45 16 7 C 0.08 2.14 8.79 127.77 1.12 3.26 16 8 C 0.23 11.31 4.23 85.63 0.36 11.67 16 9 C -0.53 -32.28 9.94 25.60 0.25 -32.03 16 10 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 11 C 0.01 0.60 5.47 84.65 0.46 1.06 16 12 N -0.95 -61.26 13.96 21.45 0.30 -60.96 16 13 Si 0.95 45.54 27.47 68.60 1.88 47.42 16 14 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 15 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 16 H -0.24 -10.16 6.54 99.48 0.65 -9.51 16 17 N -0.53 -15.08 3.89 -890.88 -3.47 -18.55 16 18 C 0.06 1.13 4.21 83.94 0.35 1.48 16 19 C -0.12 -2.18 5.53 28.92 0.16 -2.02 16 20 C -0.10 -1.94 5.10 30.29 0.15 -1.78 16 21 C -0.08 -2.03 2.32 -11.18 -0.03 -2.05 16 22 H 0.04 1.33 7.38 -2.39 -0.02 1.32 16 23 C -0.15 -3.15 8.80 71.98 0.63 -2.52 16 24 C -0.10 -2.89 5.51 31.40 0.17 -2.71 16 25 C 0.07 2.09 3.23 87.16 0.28 2.37 16 26 H 0.09 1.55 4.78 -2.38 -0.01 1.54 16 27 H 0.09 1.31 7.06 -2.39 -0.02 1.29 16 28 H 0.05 1.16 6.67 -2.39 -0.02 1.15 16 29 H 0.08 1.75 7.12 -2.39 -0.02 1.73 16 30 H 0.06 1.94 8.07 -2.39 -0.02 1.93 16 31 H 0.09 1.98 5.92 -2.38 -0.01 1.96 16 32 H 0.05 2.24 7.13 -2.39 -0.02 2.22 16 33 H 0.01 0.78 6.85 -2.39 -0.02 0.77 16 34 H 0.27 16.09 8.31 -92.71 -0.77 15.31 16 35 H 0.06 0.88 6.77 -2.38 -0.02 0.86 16 36 H 0.08 1.33 7.56 -2.39 -0.02 1.31 16 37 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.05 1.14 7.59 -2.39 -0.02 1.12 16 39 H 0.07 1.15 7.15 -2.39 -0.02 1.13 16 40 H 0.07 1.19 7.69 -2.39 -0.02 1.17 16 41 H 0.06 1.18 8.07 -2.39 -0.02 1.16 16 42 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.07 1.68 7.98 -2.39 -0.02 1.66 16 45 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.04 1.28 5.37 -2.39 -0.01 1.27 16 47 H 0.06 1.24 6.51 -2.39 -0.02 1.23 16 Total: -1.00 -79.46 344.82 2.28 -77.18 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.88 Total: 14.85 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 5.16 Total: -2.71 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -5.60 Total: -106.97 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.04 Total: -29.77 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.88 Total: 47.42 kcal Total: -79.46 2.28 -77.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119697014.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.707 kcal (2) G-P(sol) polarization free energy of solvation -79.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds