Wall clock time and date at job start Tue Mar 31 2020 06:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47184 * 2 1 4 4 C 1.50703 * 109.47558 * 240.00377 * 2 1 3 5 5 O 1.21278 * 119.99727 * 240.00352 * 4 2 1 6 6 N 1.34781 * 119.99832 * 59.99491 * 4 2 1 7 7 C 1.46498 * 119.99738 * 180.02562 * 6 4 2 8 8 H 1.08994 * 109.47156 * 325.00276 * 7 6 4 9 9 C 1.53002 * 109.47164 * 85.00124 * 7 6 4 10 10 C 1.52997 * 109.46971 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47026 * 299.99545 * 10 9 7 12 12 C 1.52993 * 109.46784 * 60.00827 * 11 10 9 13 13 H 1.09001 * 109.48008 * 59.99334 * 12 11 10 14 14 C 1.53005 * 109.47299 * 179.97438 * 12 11 10 15 15 C 1.52997 * 109.46847 * 205.00045 * 7 6 4 16 16 H 1.08998 * 109.47002 * 60.00758 * 15 7 6 17 17 C 1.52999 * 109.47247 * 299.99609 * 15 7 6 18 18 N 1.46499 * 109.47391 * 119.99918 * 2 1 3 19 19 C 1.46500 * 119.99743 * 60.00117 * 18 2 1 20 20 C 1.36932 * 120.00187 * 240.00330 * 18 2 1 21 21 H 1.07995 * 120.00140 * 338.03595 * 20 18 2 22 22 C 1.38823 * 119.99792 * 157.75935 * 20 18 2 23 23 N 1.31614 * 119.99870 * 348.28854 * 22 20 18 24 24 Si 1.86797 * 119.99659 * 168.28966 * 22 20 18 25 25 H 1.48498 * 109.47375 * 60.00133 * 24 22 20 26 26 H 1.48502 * 109.46902 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47341 * 299.99644 * 24 22 20 28 28 H 1.09008 * 109.46808 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47250 * 299.99719 * 1 2 3 30 30 H 1.09001 * 109.47144 * 60.00408 * 1 2 3 31 31 H 0.96995 * 119.99660 * 0.02562 * 6 4 2 32 32 H 1.09001 * 109.46975 * 300.00095 * 9 7 6 33 33 H 1.09000 * 109.46815 * 59.99610 * 9 7 6 34 34 H 1.09007 * 109.46941 * 180.02562 * 10 9 7 35 35 H 1.08994 * 109.47220 * 60.00230 * 10 9 7 36 36 H 1.08993 * 109.47253 * 300.00086 * 11 10 9 37 37 H 1.09000 * 109.47049 * 180.02562 * 11 10 9 38 38 H 1.08999 * 109.47042 * 179.97438 * 14 12 11 39 39 H 1.09001 * 109.46371 * 299.99836 * 14 12 11 40 40 H 1.08993 * 109.46944 * 59.99133 * 14 12 11 41 41 H 1.09001 * 109.46779 * 60.00863 * 17 15 7 42 42 H 1.09001 * 109.46991 * 179.97438 * 17 15 7 43 43 H 1.08993 * 109.47380 * 300.00358 * 17 15 7 44 44 H 1.09000 * 109.47291 * 264.81491 * 19 18 2 45 45 H 1.09000 * 109.47063 * 24.81247 * 19 18 2 46 46 H 1.09006 * 109.47288 * 144.81067 * 19 18 2 47 47 H 0.97005 * 119.99719 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7297 -1.6964 -1.1192 6 7 1.7068 -0.2498 -2.4546 7 6 2.1948 -0.9406 -3.6508 8 1 3.1938 -1.3331 -3.4615 9 6 1.2503 -2.0943 -3.9944 10 6 1.7596 -2.8153 -5.2440 11 6 1.8107 -1.8320 -6.4150 12 6 2.7552 -0.6785 -6.0714 13 1 3.7544 -1.0708 -5.8826 14 6 2.8068 0.3047 -7.2427 15 6 2.2464 0.0424 -4.8220 16 1 2.9193 0.8642 -4.5772 17 6 0.8439 0.5932 -5.0877 18 7 2.0184 -0.6906 1.1961 19 6 1.6645 -2.0932 1.4279 20 6 2.8056 -0.0251 2.0975 21 1 3.3557 0.8519 1.7900 22 6 2.8921 -0.4744 3.4082 23 7 2.0528 -1.3883 3.8472 24 14 4.1995 0.2180 4.5485 25 1 4.0120 1.6848 4.6838 26 1 4.0805 -0.4210 5.8837 27 1 5.5452 -0.0591 3.9848 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.1494 0.5390 -2.5435 32 1 1.2135 -2.7946 -3.1599 33 1 0.2512 -1.7018 -4.1836 34 1 1.0865 -3.6370 -5.4891 35 1 2.7588 -3.2078 -5.0552 36 1 0.8115 -1.4397 -6.6039 37 1 2.1731 -2.3458 -7.3054 38 1 3.4793 1.1267 -6.9977 39 1 3.1698 -0.2094 -8.1327 40 1 1.8077 0.6970 -7.4319 41 1 0.4809 1.1073 -4.1978 42 1 0.8808 1.2939 -5.9219 43 1 0.1711 -0.2286 -5.3325 44 1 0.7898 -2.1449 2.0763 45 1 1.4397 -2.5733 0.4756 46 1 2.5007 -2.6050 1.9044 47 1 2.1135 -1.7025 4.7630 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120747134.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:07 Heat of formation + Delta-G solvation = -35.219081 kcal Electronic energy + Delta-G solvation = -23787.811195 eV Core-core repulsion = 20584.449866 eV Total energy + Delta-G solvation = -3203.361329 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.21655 -38.50169 -35.36751 -34.10077 -32.70118 -32.05272 -30.46157 -28.89685 -27.28747 -25.87979 -25.83548 -24.07748 -22.48299 -21.84832 -20.67174 -19.35505 -18.46586 -16.86305 -16.42338 -15.92315 -15.40892 -14.83171 -14.66520 -14.48116 -14.23499 -13.77036 -13.71057 -13.11921 -13.01932 -12.70453 -12.59242 -12.37040 -12.31373 -12.11933 -11.69124 -11.59657 -11.49219 -11.22803 -11.17400 -10.83994 -10.78706 -10.69759 -10.55434 -10.49640 -10.26478 -10.18041 -10.15718 -9.99173 -9.78936 -8.93276 -8.54818 -8.43391 -6.69570 -5.64588 -3.10927 3.42746 3.44166 3.48727 3.50452 3.65834 4.49816 4.54994 4.57942 4.67006 4.99032 5.04700 5.16221 5.21170 5.30353 5.33371 5.44216 5.48654 5.52800 5.54436 5.59813 5.62372 5.71476 5.76478 5.82234 5.87301 5.96333 5.98201 6.00517 6.06614 6.15307 6.17648 6.24529 6.29671 6.34190 6.48894 6.59933 6.88767 6.96672 7.08403 7.62666 7.81659 7.92760 8.06607 8.45212 8.99508 9.30579 9.92134 10.40720 11.39372 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031022 B = 0.003802 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.359501 B = 7362.880339 C = 7497.112581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.158 3.842 3 H 0.086 0.914 4 C 0.492 3.508 5 O -0.526 6.526 6 N -0.739 5.739 7 C 0.151 3.849 8 H 0.081 0.919 9 C -0.130 4.130 10 C -0.117 4.117 11 C -0.116 4.116 12 C -0.085 4.085 13 H 0.071 0.929 14 C -0.148 4.148 15 C -0.092 4.092 16 H 0.074 0.926 17 C -0.153 4.153 18 N -0.573 5.573 19 C 0.172 3.828 20 C -0.257 4.257 21 H 0.066 0.934 22 C 0.005 3.995 23 N -0.905 5.905 24 Si 0.907 3.093 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.284 1.284 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.392 0.608 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.025 0.975 45 H 0.005 0.995 46 H 0.040 0.960 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.794 3.156 -21.609 22.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.045 3.955 3 H 0.104 0.896 4 C 0.277 3.723 5 O -0.399 6.399 6 N -0.394 5.394 7 C 0.046 3.954 8 H 0.100 0.900 9 C -0.168 4.168 10 C -0.155 4.155 11 C -0.153 4.153 12 C -0.104 4.104 13 H 0.089 0.911 14 C -0.205 4.205 15 C -0.111 4.111 16 H 0.092 0.908 17 C -0.211 4.211 18 N -0.293 5.293 19 C 0.028 3.972 20 C -0.386 4.386 21 H 0.084 0.916 22 C -0.194 4.194 23 N -0.550 5.550 24 Si 0.737 3.263 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.211 1.211 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.227 0.773 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.043 0.957 45 H 0.024 0.976 46 H 0.058 0.942 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.268 2.319 -21.259 21.633 hybrid contribution 0.468 0.651 0.620 1.014 sum -2.801 2.970 -20.639 21.039 Atomic orbital electron populations 1.22222 0.96449 1.01723 1.00844 1.20246 0.93315 0.95988 0.86001 0.89634 1.22729 0.79547 0.85165 0.84846 1.90622 1.36810 1.26061 1.86442 1.46468 1.55125 1.32346 1.05463 1.20800 0.98511 0.91922 0.84181 0.90041 1.21942 0.99233 0.97854 0.97788 1.21488 1.01590 0.97741 0.94670 1.21649 0.99814 0.96006 0.97825 1.21085 0.99442 0.95524 0.94321 0.91091 1.21876 1.01890 0.99061 0.97665 1.21358 0.97719 0.97756 0.94299 0.90799 1.22006 0.96589 1.01068 1.01391 1.43623 1.57834 1.08510 1.19375 1.20712 0.99243 0.82833 0.94402 1.19165 1.19684 1.10518 0.89280 0.91578 1.24967 0.98571 0.99292 0.96557 1.70090 1.36311 1.32701 1.15871 0.86303 0.81743 0.78339 0.79928 1.20954 1.21611 1.21084 0.92957 0.91549 0.93929 0.77284 0.91455 0.91797 0.92038 0.91899 0.91672 0.92239 0.92741 0.92859 0.92355 0.92782 0.92348 0.91787 0.95680 0.97601 0.94169 0.93740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.09 37.16 0.34 -2.36 16 2 C 0.16 3.30 3.12 -69.08 -0.22 3.08 16 3 H 0.09 1.70 7.86 -51.93 -0.41 1.29 16 4 C 0.49 9.71 6.82 -10.98 -0.07 9.63 16 5 O -0.53 -12.63 14.27 5.56 0.08 -12.55 16 6 N -0.74 -10.72 4.89 -53.81 -0.26 -10.98 16 7 C 0.15 1.97 2.15 -67.93 -0.15 1.82 16 8 H 0.08 1.29 7.58 -51.93 -0.39 0.89 16 9 C -0.13 -1.59 5.22 -26.73 -0.14 -1.73 16 10 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 11 C -0.12 -0.97 4.93 -26.73 -0.13 -1.11 16 12 C -0.08 -0.74 2.49 -90.64 -0.23 -0.97 16 13 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 14 C -0.15 -1.07 8.84 37.16 0.33 -0.75 16 15 C -0.09 -0.90 2.41 -90.64 -0.22 -1.12 16 16 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 17 C -0.15 -1.27 7.97 37.16 0.30 -0.98 16 18 N -0.57 -15.16 2.59 -174.81 -0.45 -15.61 16 19 C 0.17 4.67 7.46 59.85 0.45 5.12 16 20 C -0.26 -7.33 9.60 -15.06 -0.14 -7.48 16 21 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 22 C 0.00 0.13 5.13 -17.43 -0.09 0.04 16 23 N -0.91 -27.18 10.59 55.49 0.59 -26.59 16 24 Si 0.91 22.49 29.57 -169.99 -5.03 17.47 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 28 H 0.05 0.97 7.67 -51.92 -0.40 0.58 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.04 0.57 7.56 -51.93 -0.39 0.18 16 31 H 0.39 4.67 6.28 -40.82 -0.26 4.41 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.72 6.43 -51.93 -0.33 0.39 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.40 6.43 -51.93 -0.33 0.06 16 41 H 0.05 0.44 6.51 -51.93 -0.34 0.10 16 42 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 43 H 0.06 0.53 4.81 -51.93 -0.25 0.28 16 44 H 0.02 0.71 7.36 -51.93 -0.38 0.32 16 45 H 0.01 0.14 6.43 -51.93 -0.33 -0.19 16 46 H 0.04 1.19 7.26 -51.93 -0.38 0.81 16 47 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 348.81 15.07 5.26 5.26 Total: -1.00 -32.70 348.81 -8.17 -40.87 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -8.21 Total: 0.29 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -0.14 Total: 1.85 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -0.13 Total: -53.19 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.08 Total: -12.55 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.03 Total: 17.47 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.70 -8.17 -40.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120747134.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.649 kcal (2) G-P(sol) polarization free energy of solvation -32.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds