Wall clock time and date at job start Tue Mar 31 2020 06:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46497 * 2 1 4 4 C 1.50706 * 109.46925 * 119.99737 * 2 1 3 5 5 O 1.21279 * 119.99507 * 120.00341 * 4 2 1 6 6 N 1.34774 * 120.00020 * 300.00031 * 4 2 1 7 7 C 1.46495 * 119.99828 * 0.02562 * 6 4 2 8 8 C 1.46496 * 119.99544 * 180.02562 * 6 4 2 9 9 C 1.50699 * 109.47598 * 90.00303 * 8 6 4 10 10 H 1.08005 * 119.99628 * 359.97438 * 9 8 6 11 11 C 1.37877 * 120.00538 * 179.97438 * 9 8 6 12 12 N 1.31511 * 119.99774 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00058 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47013 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46808 * 120.00120 * 13 11 9 16 16 H 1.48501 * 109.46891 * 240.00253 * 13 11 9 17 17 N 1.46893 * 109.47050 * 239.99637 * 2 1 3 18 18 C 1.46850 * 111.00478 * 306.04588 * 17 2 1 19 19 C 1.53035 * 109.52353 * 174.16214 * 18 17 2 20 20 C 1.53121 * 109.28081 * 59.17780 * 19 18 17 21 21 H 1.08998 * 109.51930 * 62.25177 * 20 19 18 22 22 C 1.52998 * 109.52261 * 182.37718 * 20 19 18 23 23 C 1.53121 * 109.16115 * 302.34596 * 20 19 18 24 24 H 1.08998 * 109.49910 * 177.59496 * 23 20 19 25 25 C 1.52995 * 109.50233 * 297.71271 * 23 20 19 26 26 C 1.46851 * 110.99959 * 181.83614 * 17 2 1 27 27 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47059 * 299.99766 * 1 2 3 29 29 H 1.08992 * 109.47060 * 60.00250 * 1 2 3 30 30 H 1.08997 * 109.47477 * 90.00366 * 7 6 4 31 31 H 1.09004 * 109.46971 * 209.99938 * 7 6 4 32 32 H 1.08993 * 109.47768 * 330.00002 * 7 6 4 33 33 H 1.09008 * 109.47096 * 209.99661 * 8 6 4 34 34 H 1.09003 * 109.47776 * 329.99537 * 8 6 4 35 35 H 0.97002 * 119.99965 * 179.97438 * 12 11 9 36 36 H 1.08999 * 109.46037 * 294.17431 * 18 17 2 37 37 H 1.08998 * 109.45976 * 54.14069 * 18 17 2 38 38 H 1.09006 * 109.50150 * 179.12141 * 19 18 17 39 39 H 1.09003 * 109.50598 * 299.19692 * 19 18 17 40 40 H 1.08997 * 109.47233 * 60.00190 * 22 20 19 41 41 H 1.08996 * 109.46877 * 180.02562 * 22 20 19 42 42 H 1.09005 * 109.47115 * 299.99951 * 22 20 19 43 43 H 1.09005 * 109.47338 * 59.99727 * 25 23 20 44 44 H 1.08993 * 109.47327 * 179.97438 * 25 23 20 45 45 H 1.09004 * 109.47011 * 300.00347 * 25 23 20 46 46 H 1.09006 * 109.45917 * 305.85653 * 26 17 2 47 47 H 1.08993 * 109.46479 * 65.82311 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7296 -1.6964 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 0.8640 0.9409 2.5889 8 6 2.1955 -0.9402 3.6507 9 6 3.5228 -0.3561 4.0607 10 1 3.9589 0.4485 3.4873 11 6 4.1805 -0.8490 5.1678 12 7 3.6497 -1.8291 5.8657 13 14 5.8262 -0.1254 5.6755 14 1 6.2029 0.9577 4.7320 15 1 5.7203 0.4296 7.0488 16 1 6.8632 -1.1880 5.6496 17 7 2.0196 -0.6925 -1.1993 18 6 1.4345 -2.0351 -1.3077 19 6 1.8508 -2.6686 -2.6371 20 6 3.3784 -2.7505 -2.7018 21 1 3.7429 -3.3929 -1.9002 22 6 3.8027 -3.3286 -4.0533 23 6 3.9645 -1.3454 -2.5381 24 1 5.0529 -1.4026 -2.5405 25 6 3.4961 -0.4589 -3.6937 26 6 3.4870 -0.7503 -1.2115 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.1838 0.6426 2.6225 31 1 1.1217 1.4665 3.5084 32 1 1.0271 1.5996 1.7360 33 1 1.4776 -0.8149 4.4614 34 1 2.3170 -2.0015 3.4338 35 1 4.1126 -2.1761 6.6443 36 1 1.7899 -2.6537 -0.4836 37 1 0.3479 -1.9622 -1.2645 38 1 1.4291 -3.6711 -2.7103 39 1 1.4833 -2.0582 -3.4620 40 1 3.4396 -2.6845 -4.8541 41 1 4.8901 -3.3870 -4.0983 42 1 3.3804 -4.3268 -4.1703 43 1 2.4076 -0.4011 -3.6893 44 1 3.9132 0.5413 -3.5765 45 1 3.8334 -0.8852 -4.6385 46 1 3.8909 0.2558 -1.0986 47 1 3.8327 -1.3748 -0.3879 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122635026.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:03 Heat of formation + Delta-G solvation = -31.886766 kcal Electronic energy + Delta-G solvation = -24237.398962 eV Core-core repulsion = 21034.182133 eV Total energy + Delta-G solvation = -3203.216829 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.32837 -38.33472 -35.21510 -34.78866 -32.69395 -31.58345 -30.72681 -28.08207 -27.62361 -26.12264 -25.71405 -24.06000 -22.66896 -22.22731 -20.98209 -18.63739 -18.17777 -16.61158 -16.28616 -16.19186 -15.16442 -14.79061 -14.70934 -14.46122 -14.30214 -13.91770 -13.78484 -13.23753 -13.00022 -12.77092 -12.41676 -12.30738 -12.17838 -12.05764 -11.80814 -11.74585 -11.46549 -11.35841 -11.17770 -11.02464 -10.91704 -10.82121 -10.60453 -10.51301 -10.26411 -10.14722 -9.96194 -9.86370 -9.62170 -9.43911 -8.46051 -7.64011 -7.58802 -6.06473 -4.11288 3.27736 3.33989 3.36686 3.41437 3.98681 4.15034 4.43086 4.84757 4.93051 4.97462 5.11729 5.20718 5.28251 5.35996 5.44232 5.49939 5.56519 5.60741 5.66712 5.74276 5.76533 5.83025 5.85963 5.90663 5.94580 6.00594 6.03865 6.08947 6.13567 6.21195 6.26545 6.31164 6.38471 6.44143 6.49935 6.58933 6.72911 7.01344 7.29227 7.38763 7.42741 7.53727 7.89935 8.21543 8.40900 8.88195 9.07529 9.54082 11.01565 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019300 B = 0.004916 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.420945 B = 5694.437563 C = 6394.504339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 H 0.100 0.900 4 C 0.478 3.522 5 O -0.539 6.539 6 N -0.599 5.599 7 C 0.081 3.919 8 C 0.244 3.756 9 C -0.524 4.524 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.895 5.895 13 Si 0.897 3.103 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.283 1.283 17 N -0.505 5.505 18 C 0.036 3.964 19 C -0.106 4.106 20 C -0.089 4.089 21 H 0.069 0.931 22 C -0.146 4.146 23 C -0.079 4.079 24 H 0.066 0.934 25 C -0.139 4.139 26 C 0.036 3.964 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.030 0.970 34 H 0.042 0.958 35 H 0.263 0.737 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.068 0.932 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.062 0.938 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.967 3.194 -16.644 17.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.052 4.052 3 H 0.118 0.882 4 C 0.264 3.736 5 O -0.418 6.418 6 N -0.331 5.331 7 C -0.063 4.063 8 C 0.125 3.875 9 C -0.563 4.563 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.725 3.275 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.209 1.209 17 N -0.229 5.229 18 C -0.091 4.091 19 C -0.144 4.144 20 C -0.108 4.108 21 H 0.087 0.913 22 C -0.203 4.203 23 C -0.098 4.098 24 H 0.084 0.916 25 C -0.196 4.196 26 C -0.091 4.091 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.080 0.920 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.723 2.830 -16.938 18.101 hybrid contribution 1.233 0.033 1.256 1.760 sum -4.490 2.862 -15.682 16.562 Atomic orbital electron populations 1.22102 0.92924 1.02930 1.03150 1.21808 0.96767 0.98941 0.87655 0.88242 1.21616 0.81161 0.85503 0.85298 1.90548 1.38272 1.27146 1.85797 1.48274 1.49184 1.27978 1.07628 1.21793 0.93775 0.88215 1.02486 1.19273 0.94187 0.93686 0.80395 1.21451 1.04817 1.18966 1.11092 0.92534 1.24935 0.97937 0.94952 0.96272 1.69942 1.38956 1.26120 1.18365 0.86454 0.83770 0.79058 0.78216 1.19824 1.20934 1.20871 1.62447 1.07876 1.18448 1.34109 1.22316 0.98949 0.89966 0.97911 1.21612 0.95316 0.99731 0.97717 1.21166 0.95735 0.96395 0.97486 0.91300 1.21869 1.00826 1.00286 0.97319 1.21129 0.99012 0.94518 0.95151 0.91565 1.21815 1.02501 0.98495 0.96812 1.22460 0.87413 1.01220 0.98025 0.92128 0.90642 0.91317 0.93395 0.90949 0.92200 0.95174 0.94005 0.92781 0.92012 0.91242 0.92260 0.91494 0.92486 0.93056 0.93163 0.91350 0.93574 0.93625 0.91971 0.90072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.41 37.16 0.31 -1.58 16 2 C 0.06 0.93 2.07 -68.86 -0.14 0.79 16 3 H 0.10 1.44 7.40 -51.93 -0.38 1.05 16 4 C 0.48 9.71 6.49 -10.98 -0.07 9.64 16 5 O -0.54 -12.96 11.20 5.56 0.06 -12.90 16 6 N -0.60 -12.55 2.86 -182.96 -0.52 -13.07 16 7 C 0.08 1.27 8.80 59.84 0.53 1.79 16 8 C 0.24 6.39 5.16 -5.20 -0.03 6.36 16 9 C -0.52 -14.90 9.39 -34.44 -0.32 -15.22 16 10 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 13 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 14 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 17 N -0.51 -7.53 3.98 -228.08 -0.91 -8.44 16 18 C 0.04 0.53 4.72 -3.83 -0.02 0.52 16 19 C -0.11 -1.32 5.02 -26.65 -0.13 -1.46 16 20 C -0.09 -1.14 2.56 -90.50 -0.23 -1.37 16 21 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 22 C -0.15 -1.52 8.80 37.16 0.33 -1.20 16 23 C -0.08 -1.05 2.77 -90.54 -0.25 -1.30 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 25 C -0.14 -1.60 8.34 37.16 0.31 -1.29 16 26 C 0.04 0.58 4.41 -3.83 -0.02 0.56 16 27 H 0.06 0.78 6.20 -51.93 -0.32 0.46 16 28 H 0.07 0.86 4.53 -51.93 -0.24 0.62 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.64 6.95 -51.93 -0.36 0.28 16 31 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 32 H 0.06 0.77 6.01 -51.93 -0.31 0.46 16 33 H 0.03 0.80 8.07 -51.92 -0.42 0.38 16 34 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.06 1.13 6.00 -51.93 -0.31 0.82 16 37 H 0.07 0.94 5.87 -51.93 -0.30 0.63 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.78 6.59 -51.93 -0.34 0.44 16 40 H 0.06 0.55 6.38 -51.93 -0.33 0.22 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.82 6.01 -51.93 -0.31 0.51 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.04 0.47 6.39 -51.93 -0.33 0.13 16 46 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 47 H 0.08 1.63 5.36 -51.93 -0.28 1.35 16 LS Contribution 343.08 15.07 5.17 5.17 Total: -1.00 -31.50 343.08 -8.30 -39.79 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -7.98 Total: 0.57 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 0.16 Total: -2.10 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -0.69 Total: -47.47 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.06 Total: -12.90 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.50 -8.30 -39.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122635026.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.906 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds