Wall clock time and date at job start Tue Mar 31 2020 06:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47029 * 2 1 4 4 C 1.50701 * 109.47165 * 119.99892 * 2 1 3 5 5 H 1.07999 * 119.99940 * 119.99808 * 4 2 1 6 6 C 1.37885 * 119.99918 * 300.00175 * 4 2 1 7 7 N 1.31516 * 119.99440 * 179.97438 * 6 4 2 8 8 Si 1.86792 * 120.00140 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47059 * 89.99927 * 8 6 4 10 10 H 1.48497 * 109.47244 * 209.99830 * 8 6 4 11 11 H 1.48502 * 109.47202 * 330.00269 * 8 6 4 12 12 N 1.46896 * 109.47157 * 240.00252 * 2 1 3 13 13 C 1.46903 * 110.99577 * 306.04527 * 12 2 1 14 14 C 1.46899 * 111.00331 * 69.99694 * 12 2 1 15 15 C 1.50698 * 109.46987 * 169.99914 * 14 12 2 16 16 O 1.21283 * 120.00472 * 0.02562 * 15 14 12 17 17 N 1.34777 * 119.99538 * 179.97438 * 15 14 12 18 18 C 1.46499 * 119.99665 * 179.72653 * 17 15 14 19 19 H 1.08999 * 109.47228 * 325.27715 * 18 17 15 20 20 C 1.52999 * 109.47341 * 85.27876 * 18 17 15 21 21 C 1.53001 * 109.46992 * 59.99623 * 20 18 17 22 22 C 1.53001 * 109.46876 * 60.00448 * 21 20 18 23 23 C 1.52996 * 109.47264 * 299.99762 * 22 21 20 24 24 C 1.53001 * 109.47193 * 205.27836 * 18 17 15 25 25 H 1.09005 * 109.47453 * 179.97438 * 24 18 17 26 26 C 1.53005 * 109.47302 * 60.00110 * 24 18 17 27 27 H 1.08994 * 109.47451 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47083 * 300.00243 * 1 2 3 29 29 H 1.09002 * 109.47047 * 59.99606 * 1 2 3 30 30 H 0.96999 * 119.99308 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.46920 * 183.95739 * 13 12 2 32 32 H 1.09001 * 109.47382 * 303.95543 * 13 12 2 33 33 H 1.09000 * 109.47175 * 63.95781 * 13 12 2 34 34 H 1.09003 * 109.46477 * 50.00404 * 14 12 2 35 35 H 1.08993 * 109.47002 * 290.00730 * 14 12 2 36 36 H 0.97001 * 120.00485 * 0.02562 * 17 15 14 37 37 H 1.08996 * 109.47098 * 180.02562 * 20 18 17 38 38 H 1.09001 * 109.46823 * 300.00095 * 20 18 17 39 39 H 1.08996 * 109.47314 * 300.00650 * 21 20 18 40 40 H 1.08995 * 109.46927 * 180.02562 * 21 20 18 41 41 H 1.08999 * 109.46935 * 179.97438 * 22 21 20 42 42 H 1.09005 * 109.47453 * 59.99622 * 22 21 20 43 43 H 1.09005 * 109.47296 * 300.00321 * 23 22 21 44 44 H 1.08998 * 109.47864 * 180.02562 * 23 22 21 45 45 H 1.08999 * 109.47167 * 60.00092 * 26 24 18 46 46 H 1.08994 * 109.47455 * 180.02562 * 26 24 18 47 47 H 1.09005 * 109.46645 * 300.00223 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1372 -0.8596 3.5566 8 14 0.6258 1.2798 2.6542 9 1 -0.8021 0.8745 2.6993 10 1 0.9771 1.9953 3.9071 11 1 0.8491 2.1773 1.4923 12 7 2.0196 -0.6924 -1.1994 13 6 1.4342 -2.0354 -1.3078 14 6 1.7529 0.0973 -2.4090 15 6 2.4774 -0.5163 -3.5794 16 8 3.1495 -1.5134 -3.4215 17 7 2.3777 0.0427 -4.8017 18 6 3.0869 -0.5503 -5.9382 19 1 4.0365 -0.9636 -5.5984 20 6 2.2338 -1.6653 -6.5463 21 6 0.9008 -1.0851 -7.0233 22 6 1.1617 -0.0091 -8.0793 23 6 2.0148 1.1059 -7.4713 24 6 3.3478 0.5257 -6.9942 25 1 3.8758 0.0847 -7.8397 26 6 4.2010 1.6408 -6.3863 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.9032 -0.5280 4.4375 31 1 1.8664 -2.5520 -2.1648 32 1 1.6465 -2.5987 -0.3991 33 1 0.3555 -1.9520 -1.4399 34 1 2.1025 1.1189 -2.2603 35 1 0.6814 0.1054 -2.6086 36 1 1.8399 0.8400 -4.9281 37 1 2.7616 -2.1067 -7.3916 38 1 2.0479 -2.4319 -5.7940 39 1 0.3732 -0.6439 -6.1777 40 1 0.2929 -1.8795 -7.4560 41 1 0.2120 0.4039 -8.4194 42 1 1.6894 -0.4502 -8.9249 43 1 1.4872 1.5471 -6.6256 44 1 2.2003 1.8728 -8.2234 45 1 5.1506 1.2275 -6.0464 46 1 4.3865 2.4076 -7.1384 47 1 3.6733 2.0820 -5.5406 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129617326.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:05 Heat of formation + Delta-G solvation = -39.358397 kcal Electronic energy + Delta-G solvation = -23616.744047 eV Core-core repulsion = 20413.203224 eV Total energy + Delta-G solvation = -3203.540823 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.34986 -38.47677 -36.68178 -33.63817 -32.71777 -32.56932 -30.52710 -29.71871 -27.50261 -26.31403 -25.25414 -24.07740 -22.70857 -21.65175 -20.78458 -19.25809 -19.06540 -17.11464 -16.52863 -15.84706 -15.56617 -15.30491 -14.88992 -14.55684 -14.22692 -14.19542 -13.81788 -13.55736 -13.40165 -12.99803 -12.77200 -12.50410 -12.37940 -12.20397 -12.15148 -11.91731 -11.75425 -11.47549 -11.14422 -11.14128 -11.04484 -10.85330 -10.78320 -10.52319 -10.37019 -10.20195 -10.02120 -9.54248 -9.30508 -8.98832 -8.86848 -8.55684 -7.28914 -6.02826 -4.00531 3.00777 3.26117 3.29970 3.35089 3.38968 4.37810 4.41235 4.45983 4.51447 4.83427 4.90324 4.95656 5.08171 5.15947 5.22665 5.27236 5.29306 5.36304 5.39702 5.55153 5.61302 5.67077 5.70708 5.72536 5.78901 5.85412 5.94499 6.03116 6.05634 6.13312 6.13822 6.17981 6.24909 6.30753 6.37032 6.54290 6.64942 6.78373 7.01116 7.19595 7.60356 7.68446 7.97193 8.08692 8.59567 8.69883 9.07747 9.58676 11.10519 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029404 B = 0.003765 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.027511 B = 7434.434757 C = 7541.156419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.181 3.819 3 H 0.039 0.961 4 C -0.498 4.498 5 H 0.083 0.917 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.504 5.504 13 C 0.029 3.971 14 C 0.032 3.968 15 C 0.515 3.485 16 O -0.516 6.516 17 N -0.731 5.731 18 C 0.153 3.847 19 H 0.087 0.913 20 C -0.131 4.131 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.115 4.115 24 C -0.098 4.098 25 H 0.081 0.919 26 C -0.148 4.148 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.026 0.974 30 H 0.263 0.737 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.010 0.990 34 H 0.094 0.906 35 H 0.052 0.948 36 H 0.394 0.606 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.579 5.046 -24.523 25.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.073 3.927 3 H 0.056 0.944 4 C -0.537 4.537 5 H 0.101 0.899 6 C -0.133 4.133 7 N -0.538 5.538 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.194 1.194 12 N -0.227 5.227 13 C -0.119 4.119 14 C -0.100 4.100 15 C 0.301 3.699 16 O -0.390 6.390 17 N -0.386 5.386 18 C 0.048 3.952 19 H 0.105 0.895 20 C -0.169 4.169 21 C -0.156 4.156 22 C -0.157 4.157 23 C -0.153 4.153 24 C -0.117 4.117 25 H 0.099 0.901 26 C -0.205 4.205 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.028 0.972 34 H 0.112 0.888 35 H 0.070 0.930 36 H 0.229 0.771 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.550 4.243 -24.132 24.551 hybrid contribution -1.891 1.369 0.117 2.338 sum -3.441 5.612 -24.016 24.902 Atomic orbital electron populations 1.22847 1.01720 1.01206 0.98778 1.19844 0.88658 0.95209 0.88965 0.94364 1.20930 1.31335 1.13803 0.87606 0.89853 1.24919 0.95963 0.96588 0.95805 1.69884 1.45807 1.40304 0.97829 0.86886 0.80526 0.83960 0.76887 1.20825 1.22430 1.19438 1.61907 1.58761 1.02266 0.99786 1.22425 0.95042 0.91147 1.03271 1.21993 0.97755 0.99037 0.91174 1.20876 0.81287 0.84305 0.83407 1.90656 1.39456 1.24782 1.84115 1.46146 1.52521 1.31877 1.08089 1.20853 0.96032 0.92765 0.85544 0.89524 1.21918 0.96255 0.98163 1.00596 1.21491 0.97382 0.98100 0.98597 1.21547 0.99603 0.96303 0.98236 1.21602 0.95476 0.97811 1.00416 1.21416 0.96416 0.96034 0.97835 0.90056 1.21823 0.99923 0.97977 1.00794 0.92297 0.93629 0.95507 0.92669 0.91568 0.90299 0.97208 0.88784 0.93031 0.77074 0.91431 0.91247 0.91878 0.92235 0.92131 0.92025 0.92040 0.91763 0.92400 0.92702 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.02 7.92 37.16 0.29 -3.73 16 2 C 0.18 4.30 1.90 -68.87 -0.13 4.17 16 3 H 0.04 0.93 6.99 -51.93 -0.36 0.56 16 4 C -0.50 -14.18 8.49 -34.44 -0.29 -14.47 16 5 H 0.08 2.63 7.37 -52.49 -0.39 2.25 16 6 C 0.07 1.98 5.45 -17.82 -0.10 1.89 16 7 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 8 Si 0.89 21.85 24.37 -169.99 -4.14 17.70 16 9 H -0.28 -6.76 6.87 56.52 0.39 -6.37 16 10 H -0.30 -7.35 7.11 56.52 0.40 -6.94 16 11 H -0.27 -6.28 6.53 56.52 0.37 -5.91 16 12 N -0.50 -10.88 4.44 -237.73 -1.06 -11.94 16 13 C 0.03 0.61 8.34 60.07 0.50 1.11 16 14 C 0.03 0.54 5.02 -4.98 -0.02 0.51 16 15 C 0.51 8.14 7.52 -10.99 -0.08 8.06 16 16 O -0.52 -10.21 13.97 5.55 0.08 -10.14 16 17 N -0.73 -8.27 3.54 -53.81 -0.19 -8.46 16 18 C 0.15 1.58 2.23 -67.93 -0.15 1.43 16 19 H 0.09 1.10 7.57 -51.93 -0.39 0.70 16 20 C -0.13 -1.29 5.61 -26.73 -0.15 -1.44 16 21 C -0.12 -1.00 5.77 -26.73 -0.15 -1.15 16 22 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 23 C -0.12 -0.77 5.03 -26.73 -0.13 -0.91 16 24 C -0.10 -0.76 2.51 -90.62 -0.23 -0.99 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 C -0.15 -1.18 9.04 37.16 0.34 -0.84 16 27 H 0.06 1.26 6.41 -51.93 -0.33 0.93 16 28 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 29 H 0.03 0.48 6.91 -51.93 -0.36 0.12 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.07 1.35 5.88 -51.93 -0.31 1.05 16 32 H 0.08 1.82 6.76 -51.93 -0.35 1.47 16 33 H 0.01 0.19 6.46 -51.93 -0.34 -0.15 16 34 H 0.09 1.44 7.93 -51.93 -0.41 1.03 16 35 H 0.05 0.78 7.06 -51.93 -0.37 0.41 16 36 H 0.39 3.58 6.65 -40.82 -0.27 3.30 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.58 7.60 -51.93 -0.39 0.19 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.41 6.51 -51.93 -0.34 0.07 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 0.49 7.45 -51.93 -0.39 0.11 16 LS Contribution 343.93 15.07 5.18 5.18 Total: -1.00 -32.26 343.93 -7.98 -40.23 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -8.15 Total: 1.71 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -0.47 Total: -7.34 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.47 Total: -47.35 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.08 Total: -10.14 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.14 Total: 17.70 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.26 -7.98 -40.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129617326.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.876 kcal (2) G-P(sol) polarization free energy of solvation -32.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds