Wall clock time and date at job start Tue Mar 31 2020 06:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31519 * 119.99723 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47312 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46948 * 119.99892 * 8 6 4 11 11 H 1.48500 * 109.46809 * 239.99811 * 8 6 4 12 12 N 1.46901 * 109.46769 * 239.99705 * 2 1 3 13 13 C 1.46899 * 110.99825 * 183.95539 * 12 2 1 14 14 C 1.46899 * 111.00167 * 60.00559 * 12 2 1 15 15 C 1.50692 * 109.47582 * 189.99821 * 14 12 2 16 16 O 1.21285 * 120.00062 * 359.97438 * 15 14 12 17 17 N 1.34776 * 120.00761 * 179.97438 * 15 14 12 18 18 C 1.46496 * 120.00304 * 180.02562 * 17 15 14 19 19 H 1.08997 * 109.47425 * 35.00321 * 18 17 15 20 20 C 1.52997 * 109.46827 * 274.99686 * 18 17 15 21 21 C 1.53008 * 109.46991 * 180.02562 * 20 18 17 22 22 C 1.52998 * 109.46989 * 60.00006 * 21 20 18 23 23 C 1.52997 * 109.47248 * 299.99836 * 22 21 20 24 24 C 1.53004 * 109.47121 * 60.00482 * 23 22 21 25 25 H 1.09001 * 109.46912 * 59.99684 * 24 23 22 26 26 C 1.52992 * 109.47368 * 179.97438 * 24 23 22 27 27 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 28 28 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 29 29 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 30 30 H 0.97003 * 119.99231 * 179.97438 * 7 6 4 31 31 H 1.08996 * 109.47534 * 60.00147 * 13 12 2 32 32 H 1.08998 * 109.47337 * 180.02562 * 13 12 2 33 33 H 1.09007 * 109.47493 * 300.00068 * 13 12 2 34 34 H 1.09005 * 109.46935 * 309.99882 * 14 12 2 35 35 H 1.09005 * 109.47207 * 69.99057 * 14 12 2 36 36 H 0.97006 * 119.99230 * 359.97438 * 17 15 14 37 37 H 1.09001 * 109.47485 * 300.00003 * 20 18 17 38 38 H 1.09002 * 109.47523 * 60.00524 * 20 18 17 39 39 H 1.09001 * 109.46718 * 300.00118 * 21 20 18 40 40 H 1.09001 * 109.47282 * 180.02562 * 21 20 18 41 41 H 1.08999 * 109.46682 * 180.02562 * 22 21 20 42 42 H 1.09001 * 109.47300 * 60.00468 * 22 21 20 43 43 H 1.09001 * 109.47485 * 300.00518 * 23 22 21 44 44 H 1.09000 * 109.47080 * 180.02562 * 23 22 21 45 45 H 1.09000 * 109.47275 * 179.97438 * 26 24 23 46 46 H 1.09000 * 109.47144 * 299.99983 * 26 24 23 47 47 H 1.09001 * 109.47175 * 60.00075 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.1454 -2.2877 3.6038 10 1 3.1467 -0.1874 4.8165 11 1 1.1660 -1.5866 4.8160 12 7 2.0196 -0.6926 -1.1994 13 6 3.4850 -0.7947 -1.1871 14 6 1.5487 -0.0265 -2.4211 15 6 1.8578 -0.8911 -3.6159 16 8 2.4161 -1.9572 -3.4647 17 7 1.5141 -0.4800 -4.8525 18 6 1.8143 -1.3209 -6.0139 19 1 1.7130 -2.3706 -5.7384 20 6 3.2459 -1.0521 -6.4818 21 6 3.5592 -1.9300 -7.6952 22 6 2.5829 -1.6029 -8.8269 23 6 1.1513 -1.8717 -8.3590 24 6 0.8379 -0.9938 -7.1457 25 1 0.9392 0.0560 -7.4210 26 6 -0.5939 -1.2621 -6.6782 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 0.7090 1.1614 3.4844 31 1 3.8029 -1.3533 -0.3068 32 1 3.8209 -1.3110 -2.0863 33 1 3.9187 0.2050 -1.1592 34 1 0.4722 0.1324 -2.3564 35 1 2.0519 0.9345 -2.5280 36 1 1.0673 0.3725 -4.9734 37 1 3.3471 -0.0024 -6.7574 38 1 3.9415 -1.2847 -5.6754 39 1 3.4579 -2.9798 -7.4199 40 1 4.5793 -1.7388 -8.0283 41 1 2.8059 -2.2286 -9.6911 42 1 2.6842 -0.5531 -9.1022 43 1 1.0500 -2.9215 -8.0838 44 1 0.4558 -1.6391 -9.1655 45 1 -0.8170 -0.6371 -5.8135 46 1 -1.2891 -1.0289 -7.4846 47 1 -0.6956 -2.3119 -6.4031 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129617761.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:08 Heat of formation + Delta-G solvation = -51.185918 kcal Electronic energy + Delta-G solvation = -23240.902018 eV Core-core repulsion = 20036.848315 eV Total energy + Delta-G solvation = -3204.053703 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.06690 -38.37772 -36.31724 -34.05893 -32.68385 -32.62426 -30.06524 -29.13603 -27.73879 -26.31098 -24.77837 -23.56955 -22.50794 -21.43921 -20.38651 -20.00585 -19.16307 -16.90481 -16.31867 -16.06252 -15.26367 -14.88896 -14.70307 -14.56172 -14.25364 -13.89195 -13.76888 -13.54483 -13.28774 -12.99054 -12.58697 -12.45047 -12.23297 -12.11064 -11.80252 -11.58445 -11.37103 -11.09745 -11.06624 -10.97858 -10.79472 -10.75835 -10.64608 -10.52300 -10.33120 -10.12602 -10.06646 -9.92379 -9.14295 -8.85260 -8.78173 -8.40124 -7.11336 -5.99477 -4.02740 3.08460 3.32427 3.33776 3.40195 3.46589 4.40478 4.44365 4.49867 4.64666 4.87026 4.98152 5.12070 5.18394 5.22140 5.24168 5.28194 5.33741 5.38938 5.51992 5.54098 5.68484 5.79914 5.81669 5.85315 5.90621 5.92965 5.96100 5.98370 6.09234 6.17006 6.27795 6.39148 6.50030 6.69773 6.80792 6.97357 7.03931 7.16730 7.50132 7.65696 7.80201 7.87406 8.22126 8.34099 8.58809 8.69052 9.04654 9.62154 11.07778 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036570 B = 0.003333 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.477342 B = 8398.557571 C = 8840.486750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.211 3.789 3 H -0.001 1.001 4 C -0.500 4.500 5 H 0.066 0.934 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.284 1.284 12 N -0.519 5.519 13 C 0.035 3.965 14 C 0.032 3.968 15 C 0.515 3.485 16 O -0.519 6.519 17 N -0.737 5.737 18 C 0.153 3.847 19 H 0.086 0.914 20 C -0.130 4.130 21 C -0.117 4.117 22 C -0.121 4.121 23 C -0.111 4.111 24 C -0.097 4.097 25 H 0.073 0.927 26 C -0.148 4.148 27 H 0.087 0.913 28 H 0.006 0.994 29 H 0.036 0.964 30 H 0.259 0.741 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.004 0.996 34 H 0.101 0.899 35 H 0.048 0.952 36 H 0.395 0.605 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.054 0.946 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.163 -0.471 -22.287 22.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.106 3.894 3 H 0.016 0.984 4 C -0.538 4.538 5 H 0.084 0.916 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 N -0.244 5.244 13 C -0.113 4.113 14 C -0.100 4.100 15 C 0.302 3.698 16 O -0.393 6.393 17 N -0.390 5.390 18 C 0.048 3.952 19 H 0.104 0.896 20 C -0.168 4.168 21 C -0.155 4.155 22 C -0.158 4.158 23 C -0.149 4.149 24 C -0.116 4.116 25 H 0.091 0.909 26 C -0.205 4.205 27 H 0.105 0.895 28 H 0.025 0.975 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.022 0.978 34 H 0.119 0.881 35 H 0.066 0.934 36 H 0.229 0.771 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.021 -1.632 -21.977 22.038 hybrid contribution 0.349 0.956 0.812 1.302 sum 0.328 -0.676 -21.165 21.179 Atomic orbital electron populations 1.21878 0.97767 0.99794 0.99788 1.19311 0.92308 0.91969 0.85844 0.98378 1.21204 1.30780 1.12241 0.89583 0.91634 1.24929 0.95249 0.95111 0.99030 1.69903 1.37189 1.23147 1.23272 0.86445 0.78596 0.79654 0.82780 1.19666 1.21183 1.21041 1.61874 1.10227 1.51765 1.00504 1.22323 0.87894 0.98551 1.02526 1.22022 1.02753 0.94626 0.90612 1.21008 0.77784 0.87183 0.83804 1.90637 1.40394 1.22917 1.85388 1.46147 1.63136 1.23553 1.06167 1.20897 0.93385 0.96306 0.84615 0.89607 1.21931 0.97109 0.99845 0.97955 1.21496 0.98876 1.00182 0.94953 1.21566 0.94846 1.01497 0.97908 1.21557 0.96552 1.00000 0.96800 1.21394 0.95074 1.00355 0.94825 0.90882 1.21826 0.95250 1.02303 1.01133 0.89478 0.97474 0.94513 0.93090 0.90724 0.92049 0.97778 0.88085 0.93448 0.77094 0.92062 0.91307 0.91752 0.91930 0.92013 0.92025 0.91659 0.91695 0.92229 0.92702 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 8.76 37.16 0.33 -2.95 16 2 C 0.21 5.43 2.06 -68.86 -0.14 5.28 16 3 H 0.00 -0.04 8.14 -51.93 -0.42 -0.46 16 4 C -0.50 -14.01 7.93 -34.44 -0.27 -14.29 16 5 H 0.07 1.87 6.39 -52.49 -0.34 1.53 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.62 11.32 55.43 0.63 -24.99 16 8 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 N -0.52 -11.84 4.36 -237.73 -1.04 -12.88 16 13 C 0.04 0.78 8.88 60.06 0.53 1.31 16 14 C 0.03 0.58 5.26 -4.98 -0.03 0.55 16 15 C 0.52 8.70 7.49 -10.99 -0.08 8.62 16 16 O -0.52 -10.70 13.99 5.55 0.08 -10.62 16 17 N -0.74 -9.03 4.38 -53.81 -0.24 -9.27 16 18 C 0.15 1.70 1.90 -67.93 -0.13 1.57 16 19 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 20 C -0.13 -1.38 5.49 -26.73 -0.15 -1.53 16 21 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 22 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 23 C -0.11 -0.83 5.20 -26.73 -0.14 -0.97 16 24 C -0.10 -0.82 2.29 -90.62 -0.21 -1.03 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 C -0.15 -1.27 9.04 37.15 0.34 -0.93 16 27 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 28 H 0.01 0.14 6.20 -51.93 -0.32 -0.19 16 29 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.07 1.73 6.23 -51.93 -0.32 1.41 16 32 H 0.06 1.30 5.82 -51.93 -0.30 0.99 16 33 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 34 H 0.10 1.75 5.83 -51.93 -0.30 1.45 16 35 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 36 H 0.40 3.83 8.38 -40.82 -0.34 3.49 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.54 7.44 -51.93 -0.39 0.15 16 46 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 356.76 15.07 5.38 5.38 Total: -1.00 -31.08 356.76 -9.07 -40.15 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -8.50 Total: 0.61 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -0.36 Total: -5.06 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.65 Total: -47.14 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.08 -9.07 -40.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129617761.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.034 kcal (2) G-P(sol) polarization free energy of solvation -31.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds