Wall clock time and date at job start Tue Mar 31 2020 06:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47479 * 2 1 4 4 C 1.50698 * 109.47307 * 119.99961 * 2 1 3 5 5 H 1.07997 * 120.00372 * 119.99820 * 4 2 1 6 6 C 1.37883 * 119.99947 * 299.72412 * 4 2 1 7 7 N 1.31510 * 120.00373 * 180.27025 * 6 4 2 8 8 Si 1.86807 * 119.99800 * 0.27685 * 6 4 2 9 9 H 1.48496 * 109.47116 * 89.99672 * 8 6 4 10 10 H 1.48497 * 109.47008 * 209.99649 * 8 6 4 11 11 H 1.48500 * 109.47007 * 330.00068 * 8 6 4 12 12 N 1.46898 * 109.47378 * 239.99835 * 2 1 3 13 13 C 1.46903 * 110.99906 * 306.04911 * 12 2 1 14 14 C 1.46903 * 111.00161 * 69.99923 * 12 2 1 15 15 C 1.50697 * 109.47352 * 170.00040 * 14 12 2 16 16 O 1.21278 * 119.99908 * 349.67300 * 15 14 12 17 17 N 1.34777 * 120.00254 * 169.66496 * 15 14 12 18 18 C 1.46917 * 120.63551 * 202.62666 * 17 15 14 19 19 H 1.08993 * 109.59023 * 113.79873 * 18 17 15 20 20 C 1.53004 * 109.58572 * 353.51459 * 18 17 15 21 21 C 1.53195 * 108.77598 * 233.58743 * 18 17 15 22 22 C 1.53037 * 109.31210 * 305.36455 * 21 18 17 23 23 C 1.53043 * 109.53913 * 61.36135 * 22 21 18 24 24 C 1.46933 * 120.62711 * 22.34626 * 17 15 14 25 25 H 1.08999 * 109.58390 * 246.20290 * 24 17 15 26 26 C 1.53008 * 109.58556 * 6.62188 * 24 17 15 27 27 H 1.09007 * 109.47181 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47329 * 300.00061 * 1 2 3 29 29 H 1.09005 * 109.47430 * 60.00376 * 1 2 3 30 30 H 0.96998 * 120.00125 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.47540 * 59.99756 * 13 12 2 32 32 H 1.09004 * 109.46895 * 180.02562 * 13 12 2 33 33 H 1.09001 * 109.46895 * 299.99649 * 13 12 2 34 34 H 1.09007 * 109.46769 * 290.00193 * 14 12 2 35 35 H 1.08996 * 109.47107 * 50.00138 * 14 12 2 36 36 H 1.08999 * 109.47251 * 57.03606 * 20 18 17 37 37 H 1.08997 * 109.47195 * 177.04108 * 20 18 17 38 38 H 1.09002 * 109.47284 * 297.03877 * 20 18 17 39 39 H 1.09003 * 109.49655 * 65.31244 * 21 18 17 40 40 H 1.08997 * 109.50121 * 185.40857 * 21 18 17 41 41 H 1.09002 * 109.46437 * 181.38727 * 22 21 18 42 42 H 1.09005 * 109.46035 * 301.34091 * 22 21 18 43 43 H 1.08998 * 109.49706 * 58.58973 * 23 22 21 44 44 H 1.09003 * 109.49558 * 178.68517 * 23 22 21 45 45 H 1.09003 * 109.46747 * 50.48448 * 26 24 17 46 46 H 1.08997 * 109.46463 * 170.47592 * 26 24 17 47 47 H 1.08994 * 109.47205 * 290.48045 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.7039 -0.2360 2.4828 7 7 2.1467 -0.8528 3.5566 8 14 0.6299 1.2828 2.6541 9 1 -0.7974 0.8764 2.7062 10 1 0.9857 2.0022 3.9035 11 1 0.8477 2.1771 1.4887 12 7 2.0197 -0.6925 -1.1994 13 6 1.4343 -2.0355 -1.3078 14 6 1.7529 0.0972 -2.4091 15 6 2.4775 -0.5164 -3.5794 16 8 3.2940 -1.3939 -3.3947 17 7 2.2180 -0.0900 -4.8313 18 6 2.5010 -0.9496 -5.9887 19 1 1.5658 -1.2285 -6.4741 20 6 3.2337 -2.2100 -5.5245 21 6 3.3805 -0.1747 -6.9751 22 6 2.6998 1.1499 -7.3275 23 6 2.5351 1.9935 -6.0612 24 6 1.6409 1.2410 -5.0643 25 1 0.6370 1.1371 -5.4758 26 6 1.5798 2.0118 -3.7439 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.9160 -0.5188 4.4375 31 1 0.3490 -1.9550 -1.3693 32 1 1.8140 -2.5261 -2.2040 33 1 1.7059 -2.6221 -0.4301 34 1 0.6814 0.1052 -2.6087 35 1 2.1025 1.1188 -2.2604 36 1 2.6323 -2.7247 -4.7751 37 1 3.3961 -2.8704 -6.3762 38 1 4.1947 -1.9329 -5.0912 39 1 4.3501 0.0247 -6.5189 40 1 3.5185 -0.7651 -7.8809 41 1 3.3117 1.6922 -8.0482 42 1 1.7197 0.9504 -7.7610 43 1 3.5127 2.1725 -5.6137 44 1 2.0715 2.9464 -6.3167 45 1 2.5536 1.9738 -3.2557 46 1 1.3127 3.0499 -3.9414 47 1 0.8297 1.5608 -3.0943 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129687662.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:11 Heat of formation + Delta-G solvation = 30.404005 kcal Electronic energy + Delta-G solvation = -24398.364643 eV Core-core repulsion = 21197.848944 eV Total energy + Delta-G solvation = -3200.515699 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.80217 -37.82669 -36.74642 -34.55794 -32.80617 -32.46078 -30.01527 -29.11911 -28.14200 -25.95427 -25.27219 -24.51357 -22.70420 -21.67536 -21.09588 -19.29257 -18.96315 -16.73841 -16.54014 -16.06986 -15.63986 -14.87353 -14.71765 -14.43177 -14.21895 -14.20213 -13.76203 -13.60230 -13.15387 -13.03328 -12.85470 -12.53567 -12.21767 -12.08987 -11.95237 -11.87758 -11.62885 -11.44820 -11.19622 -11.09489 -10.98700 -10.91418 -10.74520 -10.71900 -10.25583 -10.04363 -10.00790 -9.51954 -9.08760 -8.82726 -8.55337 -8.37795 -7.23657 -6.02370 -4.00042 2.88809 3.02142 3.26125 3.34711 3.38974 4.41394 4.44971 4.51707 4.61882 4.76304 4.85848 4.97128 5.04970 5.10567 5.19546 5.28237 5.33848 5.42167 5.54142 5.61715 5.63523 5.68532 5.73237 5.75842 5.83295 5.85644 5.93668 6.00125 6.07654 6.11036 6.21362 6.24716 6.29933 6.32978 6.49129 6.53533 6.74204 6.80297 6.96352 7.19874 7.55052 7.66937 7.97774 8.08593 8.55632 8.70880 9.08368 9.59202 11.10985 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028463 B = 0.004699 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.510563 B = 5957.000290 C = 6590.678930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.183 3.817 3 H 0.038 0.962 4 C -0.498 4.498 5 H 0.083 0.917 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.509 5.509 13 C 0.032 3.968 14 C 0.003 3.997 15 C 0.522 3.478 16 O -0.500 6.500 17 N -0.628 5.628 18 C 0.148 3.852 19 H 0.065 0.935 20 C -0.142 4.142 21 C -0.132 4.132 22 C -0.119 4.119 23 C -0.130 4.130 24 C 0.147 3.853 25 H 0.071 0.929 26 C -0.197 4.197 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.025 0.975 30 H 0.263 0.737 31 H 0.012 0.988 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.126 0.874 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.983 5.753 -22.346 23.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.075 3.925 3 H 0.056 0.944 4 C -0.536 4.536 5 H 0.101 0.899 6 C -0.133 4.133 7 N -0.539 5.539 8 Si 0.716 3.284 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.194 1.194 12 N -0.232 5.232 13 C -0.116 4.116 14 C -0.127 4.127 15 C 0.311 3.689 16 O -0.373 6.373 17 N -0.367 5.367 18 C 0.045 3.955 19 H 0.083 0.917 20 C -0.199 4.199 21 C -0.170 4.170 22 C -0.156 4.156 23 C -0.168 4.168 24 C 0.043 3.957 25 H 0.089 0.911 26 C -0.254 4.254 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.031 0.969 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.144 0.856 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.096 0.904 46 H 0.087 0.913 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.997 5.191 -21.962 22.655 hybrid contribution -1.693 1.016 0.058 1.975 sum -3.690 6.207 -21.904 23.064 Atomic orbital electron populations 1.22852 1.01816 1.01188 0.98738 1.19804 0.88566 0.95153 0.88945 0.94401 1.20934 1.31345 1.13719 0.87619 0.89895 1.24919 0.95957 0.96576 0.95814 1.69879 1.45776 1.40371 0.97825 0.86900 0.80543 0.83998 0.76917 1.20840 1.22441 1.19388 1.61975 1.58736 1.02195 1.00273 1.22337 0.95303 0.91511 1.02447 1.23720 0.97398 1.00666 0.90934 1.20828 0.82098 0.82803 0.83215 1.90690 1.30898 1.31282 1.84395 1.48284 1.66175 1.16550 1.05646 1.21144 0.97585 0.90701 0.86034 0.91727 1.22201 1.02767 0.95138 0.99791 1.22011 0.99600 0.96364 0.99019 1.21511 1.00817 0.96088 0.97227 1.22056 1.00741 0.98331 0.95690 1.21157 0.96333 0.82173 0.96037 0.91103 1.23316 1.04035 1.00831 0.97173 0.92293 0.93619 0.95556 0.92685 0.96944 0.92730 0.90368 0.93012 0.85642 0.91583 0.93846 0.90294 0.91337 0.91179 0.91816 0.91961 0.91268 0.90911 0.90417 0.91256 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.00 7.92 37.16 0.29 -3.70 16 2 C 0.18 4.32 1.90 -68.87 -0.13 4.18 16 3 H 0.04 0.91 6.98 -51.93 -0.36 0.55 16 4 C -0.50 -14.10 8.55 -34.44 -0.29 -14.40 16 5 H 0.08 2.61 7.35 -52.49 -0.39 2.23 16 6 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 7 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 8 Si 0.89 21.73 24.37 -169.99 -4.14 17.58 16 9 H -0.28 -6.73 6.87 56.52 0.39 -6.35 16 10 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 11 H -0.27 -6.21 6.52 56.52 0.37 -5.84 16 12 N -0.51 -10.95 4.38 -237.73 -1.04 -11.99 16 13 C 0.03 0.67 8.48 60.07 0.51 1.18 16 14 C 0.00 0.05 2.65 -4.98 -0.01 0.04 16 15 C 0.52 8.60 6.25 -10.99 -0.07 8.53 16 16 O -0.50 -9.83 10.82 5.56 0.06 -9.77 16 17 N -0.63 -8.01 2.97 -157.48 -0.47 -8.47 16 18 C 0.15 1.68 3.48 -67.60 -0.24 1.45 16 19 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 20 C -0.14 -1.85 7.64 37.16 0.28 -1.57 16 21 C -0.13 -1.22 5.38 -26.61 -0.14 -1.36 16 22 C -0.12 -0.92 5.88 -26.69 -0.16 -1.08 16 23 C -0.13 -1.09 5.39 -26.39 -0.14 -1.23 16 24 C 0.15 1.46 3.47 -67.37 -0.23 1.22 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 C -0.20 -2.01 7.07 37.16 0.26 -1.75 16 27 H 0.06 1.26 6.33 -51.93 -0.33 0.93 16 28 H 0.05 1.02 3.29 -51.93 -0.17 0.85 16 29 H 0.03 0.47 6.91 -51.93 -0.36 0.11 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.01 0.24 6.21 -51.93 -0.32 -0.09 16 32 H 0.05 1.09 6.19 -51.93 -0.32 0.77 16 33 H 0.08 1.79 6.86 -51.93 -0.36 1.44 16 34 H 0.05 0.81 5.76 -51.93 -0.30 0.51 16 35 H 0.13 1.98 4.02 -52.04 -0.21 1.77 16 36 H 0.07 1.01 6.79 -51.93 -0.35 0.66 16 37 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.08 1.21 6.79 -51.93 -0.35 0.86 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.92 6.02 -51.93 -0.31 0.60 16 46 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 47 H 0.09 1.02 4.65 -51.93 -0.24 0.78 16 LS Contribution 330.38 15.07 4.98 4.98 Total: -1.00 -31.92 330.38 -7.79 -39.70 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.78 Total: 1.49 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -0.16 Total: -6.62 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.73 Total: -47.37 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.06 Total: -9.77 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.14 Total: 17.58 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.92 -7.79 -39.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129687662.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.106 kcal (2) G-P(sol) polarization free energy of solvation -31.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds