Wall clock time and date at job start Tue Mar 31 2020 06:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50694 * 109.47301 * 2 1 4 4 O 1.21275 * 119.99961 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99872 * 179.97438 * 3 2 1 6 6 C 1.47018 * 125.64981 * 0.02817 * 5 3 2 7 7 C 1.54325 * 107.40412 * 178.82520 * 6 5 3 8 8 C 1.55405 * 102.82616 * 337.97548 * 7 6 5 9 9 H 1.09004 * 110.92671 * 277.25231 * 8 7 6 10 10 N 1.46906 * 111.03686 * 153.46898 * 8 7 6 11 11 C 1.46897 * 110.99512 * 92.68518 * 10 8 7 12 12 C 1.53006 * 109.46872 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47212 * 299.99737 * 12 11 10 14 14 C 1.52993 * 109.47126 * 60.00105 * 12 11 10 15 15 C 1.52999 * 109.47074 * 179.97438 * 12 11 10 16 16 C 1.50697 * 109.47436 * 179.97438 * 15 12 11 17 17 H 1.08001 * 119.99361 * 359.97438 * 16 15 12 18 18 C 1.37869 * 120.00575 * 179.97438 * 16 15 12 19 19 N 1.31510 * 120.00400 * 179.97438 * 18 16 15 20 20 Si 1.86810 * 119.99874 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.46904 * 89.99638 * 20 18 16 22 22 H 1.48493 * 109.47199 * 210.00054 * 20 18 16 23 23 H 1.48496 * 109.46857 * 329.99936 * 20 18 16 24 24 C 1.47426 * 125.64500 * 179.97438 * 5 3 2 25 25 H 1.09007 * 109.47344 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47215 * 300.00008 * 1 2 3 27 27 H 1.08998 * 109.47041 * 59.99705 * 1 2 3 28 28 H 1.08997 * 109.46786 * 239.99549 * 2 1 3 29 29 H 1.09007 * 109.46838 * 120.00326 * 2 1 3 30 30 H 1.09002 * 109.88241 * 298.32048 * 6 5 3 31 31 H 1.09000 * 109.88049 * 59.33177 * 6 5 3 32 32 H 1.09000 * 110.72188 * 96.24097 * 7 6 5 33 33 H 1.09002 * 110.72265 * 219.52294 * 7 6 5 34 34 H 1.00896 * 110.99919 * 328.72896 * 10 8 7 35 35 H 1.08998 * 109.47338 * 299.99499 * 11 10 8 36 36 H 1.09000 * 109.47662 * 60.00130 * 11 10 8 37 37 H 1.08998 * 109.46880 * 59.99975 * 13 12 11 38 38 H 1.08994 * 109.46987 * 179.97438 * 13 12 11 39 39 H 1.08999 * 109.46970 * 300.00632 * 13 12 11 40 40 H 1.09003 * 109.47433 * 59.99266 * 14 12 11 41 41 H 1.09003 * 109.47459 * 180.02562 * 14 12 11 42 42 H 1.09004 * 109.47282 * 300.00171 * 14 12 11 43 43 H 1.09005 * 109.47291 * 300.00096 * 15 12 11 44 44 H 1.09007 * 109.47040 * 59.99709 * 15 12 11 45 45 H 0.97005 * 120.00549 * 179.97438 * 19 18 16 46 46 H 1.08999 * 110.36956 * 323.01018 * 24 5 3 47 47 H 1.09003 * 110.36599 * 85.32922 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3574 1.6670 0.0005 6 6 4.4181 0.6489 0.0005 7 6 5.7707 1.3915 -0.0290 8 6 5.3890 2.7805 -0.6121 9 1 5.3400 2.7457 -1.7005 10 7 6.3280 3.8171 -0.1629 11 6 7.4215 3.9908 -1.1284 12 6 8.3763 5.0764 -0.6276 13 6 7.6152 6.3950 -0.4765 14 6 8.9534 4.6624 0.7276 15 6 9.5156 5.2568 -1.6328 16 6 10.4558 6.3264 -1.1399 17 1 10.2600 6.8277 -0.2035 18 6 11.5658 6.6651 -1.8842 19 7 12.3859 7.5990 -1.4543 20 14 11.9040 5.7985 -3.5042 21 1 11.2443 6.5396 -4.6091 22 1 13.3686 5.7522 -3.7444 23 1 11.3678 4.4150 -3.4467 24 6 3.9833 3.0018 0.0001 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 4.3486 0.0411 0.9027 31 1 4.3238 0.0153 -0.8814 32 1 6.1761 1.4946 0.9776 33 1 6.4782 0.8784 -0.6803 34 1 6.6871 3.6061 0.7561 35 1 7.9635 3.0513 -1.2363 36 1 7.0105 4.2861 -2.0938 37 1 6.8038 6.2661 0.2398 38 1 8.2953 7.1682 -0.1194 39 1 7.2041 6.6898 -1.4420 40 1 9.4956 3.7230 0.6200 41 1 9.6333 5.4360 1.0846 42 1 8.1420 4.5335 1.4439 43 1 10.0578 4.3173 -1.7400 44 1 9.1048 5.5515 -2.5985 45 1 13.1671 7.8370 -1.9778 46 1 3.4057 3.6914 -0.6155 47 1 4.0685 3.3812 1.0184 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134516123.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:16 Heat of formation + Delta-G solvation = -53.143579 kcal Electronic energy + Delta-G solvation = -22630.958746 eV Core-core repulsion = 19426.820152 eV Total energy + Delta-G solvation = -3204.138594 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.33862 -38.42984 -37.09579 -34.12658 -33.05291 -32.19095 -30.42167 -28.86574 -27.53691 -26.41312 -25.48647 -24.39573 -22.92883 -22.02312 -20.99439 -19.36272 -17.99225 -17.43439 -16.82063 -16.71379 -15.80516 -15.21989 -15.12802 -14.43232 -14.21052 -13.90435 -13.75689 -13.35302 -13.17674 -13.02341 -12.93936 -12.59514 -12.53812 -12.31420 -12.18932 -11.97929 -11.84502 -11.56763 -11.50360 -11.11825 -11.08040 -10.92058 -10.87897 -10.52572 -10.40441 -10.06372 -9.82320 -9.71531 -9.33001 -8.94844 -8.87976 -8.51349 -8.25821 -6.01336 -3.97725 2.40937 2.69854 3.30741 3.38468 3.40809 4.02802 4.19775 4.40695 4.46564 4.55357 4.67427 4.73753 4.79189 5.01000 5.07359 5.17037 5.28725 5.31515 5.44716 5.46633 5.53781 5.56934 5.60553 5.66538 5.77787 5.81196 5.86015 5.89032 6.01388 6.10136 6.20474 6.36658 6.56080 6.65549 6.77712 7.03641 7.08651 7.15151 7.21814 7.27290 7.29951 7.41435 7.52458 7.83510 7.93799 8.58098 9.04526 9.61583 11.11720 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038736 B = 0.002860 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.669540 B = 9787.950205 C = 9968.751547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.140 4.140 3 C 0.525 3.475 4 O -0.540 6.540 5 N -0.622 5.622 6 C 0.105 3.895 7 C -0.164 4.164 8 C 0.077 3.923 9 H 0.091 0.909 10 N -0.673 5.673 11 C 0.069 3.931 12 C -0.049 4.049 13 C -0.119 4.119 14 C -0.131 4.131 15 C -0.004 4.004 16 C -0.507 4.507 17 H 0.078 0.922 18 C 0.064 3.936 19 N -0.905 5.905 20 Si 0.876 3.124 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.267 1.267 24 C 0.115 3.885 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.344 0.656 35 H 0.025 0.975 36 H 0.067 0.933 37 H 0.045 0.955 38 H 0.060 0.940 39 H 0.039 0.961 40 H 0.040 0.960 41 H 0.070 0.930 42 H 0.035 0.965 43 H 0.012 0.988 44 H 0.010 0.990 45 H 0.261 0.739 46 H 0.081 0.919 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.571 -18.042 3.319 25.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.180 4.180 3 C 0.314 3.686 4 O -0.417 6.417 5 N -0.357 5.357 6 C -0.019 4.019 7 C -0.204 4.204 8 C -0.034 4.034 9 H 0.109 0.891 10 N -0.305 5.305 11 C -0.059 4.059 12 C -0.049 4.049 13 C -0.176 4.176 14 C -0.188 4.188 15 C -0.042 4.042 16 C -0.545 4.545 17 H 0.096 0.904 18 C -0.136 4.136 19 N -0.545 5.545 20 Si 0.704 3.296 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.192 1.192 24 C -0.008 4.008 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.165 0.835 35 H 0.044 0.956 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.054 0.946 43 H 0.030 0.970 44 H 0.028 0.972 45 H 0.071 0.929 46 H 0.100 0.900 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.282 -16.935 3.023 25.103 hybrid contribution 1.069 -1.323 -0.807 1.882 sum -17.213 -18.258 2.216 25.190 Atomic orbital electron populations 1.21542 0.92956 1.01564 1.03449 1.21613 0.98560 0.93617 1.04163 1.20461 0.80308 0.91922 0.75896 1.90717 1.54291 1.46783 1.49940 1.48548 1.05120 1.08494 1.73566 1.21962 0.86980 0.91296 1.01675 1.23451 0.96158 0.98135 1.02642 1.22773 0.92385 0.88548 0.99736 0.89117 1.60383 1.18799 1.44980 1.06299 1.22182 0.90773 0.97876 0.95115 1.20426 0.94417 0.93843 0.96239 1.21627 0.98792 0.96853 1.00368 1.21786 0.99534 1.01395 0.96103 1.19630 0.93394 0.97109 0.94078 1.21126 1.06507 1.18817 1.08053 0.90411 1.25023 0.96124 0.94867 0.97623 1.69907 1.14458 1.31183 1.38920 0.86844 0.77148 0.80810 0.84818 1.20442 1.21591 1.19226 1.22174 0.92727 0.84074 1.01786 0.92058 0.91950 0.91932 0.89055 0.89072 0.91372 0.91335 0.90177 0.89812 0.83519 0.95623 0.91446 0.93627 0.92078 0.94165 0.94119 0.91090 0.94612 0.96954 0.97152 0.92878 0.90012 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.20 37.16 0.34 -0.67 16 2 C -0.14 -0.99 5.61 -27.89 -0.16 -1.15 16 3 C 0.53 5.88 7.85 -10.99 -0.09 5.80 16 4 O -0.54 -8.30 16.24 5.56 0.09 -8.21 16 5 N -0.62 -6.25 3.33 -170.52 -0.57 -6.82 16 6 C 0.10 0.74 6.48 -3.07 -0.02 0.72 16 7 C -0.16 -1.30 6.57 -24.76 -0.16 -1.46 16 8 C 0.08 0.80 3.38 -65.43 -0.22 0.58 16 9 H 0.09 0.99 7.83 -51.93 -0.41 0.58 16 10 N -0.67 -8.38 5.62 -104.32 -0.59 -8.96 16 11 C 0.07 1.03 4.51 -3.82 -0.02 1.02 16 12 C -0.05 -0.89 0.60 -154.51 -0.09 -0.99 16 13 C -0.12 -2.22 8.06 37.16 0.30 -1.92 16 14 C -0.13 -2.27 7.89 37.15 0.29 -1.98 16 15 C 0.00 -0.10 3.11 -27.88 -0.09 -0.18 16 16 C -0.51 -13.75 8.20 -34.44 -0.28 -14.03 16 17 H 0.08 2.25 5.92 -52.49 -0.31 1.94 16 18 C 0.06 1.83 5.47 -17.82 -0.10 1.73 16 19 N -0.91 -27.52 13.96 55.43 0.77 -26.74 16 20 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 24 C 0.12 1.29 6.61 -2.53 -0.02 1.28 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 27 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.62 7.76 -51.93 -0.40 0.22 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.34 4.07 6.24 -39.29 -0.25 3.82 16 35 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 37 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 38 H 0.06 1.28 6.62 -51.93 -0.34 0.93 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 42 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 43 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 44 H 0.01 0.24 7.57 -51.92 -0.39 -0.16 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.08 1.06 8.04 -51.93 -0.42 0.64 16 47 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 362.89 15.07 5.47 5.47 Total: -1.00 -31.64 362.89 -8.42 -40.06 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -8.63 Total: -0.36 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -0.31 Total: -11.26 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: -0.38 Total: -42.52 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.09 Total: -8.21 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.64 -8.42 -40.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134516123.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.082 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds