Wall clock time and date at job start Tue Mar 31 2020 06:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.53504 * 2 1 4 4 C 1.53124 * 109.49972 * 239.90924 * 2 1 3 5 5 C 1.53116 * 109.16057 * 182.40693 * 4 2 1 6 6 H 1.09011 * 109.50091 * 297.71035 * 5 4 2 7 7 C 1.52991 * 109.50487 * 177.63338 * 5 4 2 8 8 C 1.53033 * 109.28275 * 57.64593 * 5 4 2 9 9 N 1.46845 * 109.52649 * 300.82792 * 8 5 4 10 10 C 1.46897 * 111.00191 * 185.83703 * 9 8 5 11 11 C 1.53000 * 109.47145 * 295.78498 * 10 9 8 12 12 C 1.53003 * 109.47487 * 175.78767 * 10 9 8 13 13 C 1.53003 * 109.47533 * 55.78601 * 10 9 8 14 14 N 1.46499 * 109.46708 * 59.99841 * 13 10 9 15 15 C 1.34784 * 119.99893 * 180.02562 * 14 13 10 16 16 O 1.21682 * 119.99954 * 359.97438 * 15 14 13 17 17 C 1.46368 * 119.99916 * 179.72943 * 15 14 13 18 18 H 1.07998 * 120.00437 * 359.97438 * 17 15 14 19 19 C 1.40055 * 119.99853 * 179.97438 * 17 15 14 20 20 N 1.30662 * 119.99894 * 359.97438 * 19 17 15 21 21 Si 1.86805 * 119.99877 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46909 * 89.99994 * 21 19 17 23 23 H 1.48496 * 109.47072 * 210.00005 * 21 19 17 24 24 H 1.48500 * 109.46867 * 330.00008 * 21 19 17 25 25 C 1.46845 * 111.20103 * 61.73518 * 9 8 5 26 26 H 1.09006 * 109.46865 * 299.90057 * 1 2 3 27 27 H 1.08999 * 109.47703 * 59.89014 * 1 2 3 28 28 H 1.08998 * 109.47634 * 179.89885 * 1 2 3 29 29 H 1.09002 * 109.51590 * 302.30724 * 4 2 1 30 30 H 1.08994 * 109.52479 * 62.49596 * 4 2 1 31 31 H 1.08996 * 109.47502 * 59.99380 * 7 5 4 32 32 H 1.09002 * 109.47588 * 179.97438 * 7 5 4 33 33 H 1.09000 * 109.47006 * 299.99360 * 7 5 4 34 34 H 1.08996 * 109.46797 * 180.80632 * 8 5 4 35 35 H 1.09004 * 109.46060 * 60.84109 * 8 5 4 36 36 H 1.08999 * 109.47677 * 179.97438 * 11 10 9 37 37 H 1.08995 * 109.47242 * 300.00096 * 11 10 9 38 38 H 1.09005 * 109.47033 * 60.00388 * 11 10 9 39 39 H 1.09007 * 109.46830 * 300.00201 * 12 10 9 40 40 H 1.09005 * 109.46980 * 59.99913 * 12 10 9 41 41 H 1.08994 * 109.47292 * 179.97438 * 12 10 9 42 42 H 1.08998 * 109.46692 * 300.00343 * 13 10 9 43 43 H 1.08994 * 109.47584 * 180.02562 * 13 10 9 44 44 H 0.97005 * 120.00261 * 0.02562 * 14 13 10 45 45 H 0.97000 * 120.00244 * 179.97438 * 20 19 17 46 46 H 1.09005 * 109.46226 * 58.27512 * 25 9 8 47 47 H 1.09003 * 109.46567 * 178.25596 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0411 -0.7237 -1.2489 5 6 3.5711 -0.7719 -1.2110 6 1 3.9677 0.2433 -1.2299 7 6 4.0880 -1.5450 -2.4257 8 6 4.0229 -1.4730 0.0721 9 7 3.5093 -0.7422 1.2377 10 6 4.0373 -1.3060 2.4871 11 6 3.5296 -2.7396 2.6544 12 6 3.5658 -0.4569 3.6693 13 6 5.5666 -1.3089 2.4392 14 7 6.0527 0.0637 2.2791 15 6 7.3768 0.3061 2.2112 16 8 8.1685 -0.6151 2.2835 17 6 7.8623 1.6770 2.0453 18 1 7.1595 2.4942 1.9767 19 6 9.2382 1.9289 1.9753 20 7 10.0884 0.9403 2.0587 21 14 9.8578 3.6783 1.7628 22 1 10.0645 4.2958 3.0974 23 1 11.1439 3.6612 1.0207 24 1 8.8574 4.4686 1.0012 25 6 2.0410 -0.7235 1.2479 26 1 -0.3633 0.5123 0.8909 27 1 -0.3634 0.5155 -0.8890 28 1 -0.3634 -1.0276 -0.0018 29 1 1.6451 -1.7390 -1.2691 30 1 1.7155 -0.1869 -2.1398 31 1 3.7630 -1.0466 -3.3389 32 1 5.1772 -1.5787 -2.3985 33 1 3.6923 -2.5605 -2.4054 34 1 5.1120 -1.4962 0.1091 35 1 3.6375 -2.4925 0.0839 36 1 3.9217 -3.1582 3.5813 37 1 2.4402 -2.7375 2.6886 38 1 3.8656 -3.3446 1.8123 39 1 3.9275 0.5645 3.5501 40 1 2.4762 -0.4548 3.7035 41 1 3.9572 -0.8755 4.5964 42 1 5.9025 -1.9139 1.5971 43 1 5.9584 -1.7277 3.3661 44 1 5.4216 0.7982 2.2218 45 1 11.0414 1.1146 2.0099 46 1 1.6647 -1.7465 1.2542 47 1 1.6906 -0.2022 2.1388 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153645941.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:02 Heat of formation + Delta-G solvation = -56.015706 kcal Electronic energy + Delta-G solvation = -24025.167227 eV Core-core repulsion = 20820.904089 eV Total energy + Delta-G solvation = -3204.263138 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.04328 -37.34151 -36.02679 -33.49138 -32.71400 -31.98504 -30.63449 -27.74769 -26.97619 -26.65767 -26.01514 -24.54741 -23.67970 -20.64217 -19.73997 -19.53624 -18.56663 -17.03520 -16.11216 -15.30040 -15.16711 -14.75623 -14.56676 -14.32989 -13.95692 -13.92478 -13.38664 -13.14683 -12.84310 -12.75801 -12.58192 -12.49792 -12.13207 -12.06686 -11.88392 -11.73252 -11.53219 -11.40337 -11.13756 -11.12298 -10.92728 -10.72750 -10.71629 -10.49943 -10.42595 -10.29747 -10.12333 -10.04265 -9.84946 -8.76214 -8.01631 -7.48828 -7.27795 -6.08695 -4.52380 3.19628 3.26308 3.30050 3.95930 4.19095 4.69074 4.70166 4.79773 4.83747 4.99144 5.05468 5.14821 5.25102 5.38707 5.43563 5.48327 5.50537 5.57967 5.59223 5.62697 5.72672 5.75185 5.80796 5.84825 5.88187 5.90527 5.95442 6.02530 6.05580 6.11508 6.14278 6.21695 6.25138 6.30331 6.37315 6.44634 6.56936 6.60499 6.63013 7.38418 7.39132 7.53116 8.11269 8.29295 8.47591 9.13054 9.73225 10.71457 10.92253 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017880 B = 0.004756 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.644579 B = 5885.698485 C = 6308.681162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.079 0.921 4 C -0.107 4.107 5 C -0.089 4.089 6 H 0.081 0.919 7 C -0.145 4.145 8 C 0.057 3.943 9 N -0.518 5.518 10 C 0.097 3.903 11 C -0.177 4.177 12 C -0.136 4.136 13 C 0.148 3.852 14 N -0.754 5.754 15 C 0.555 3.445 16 O -0.587 6.587 17 C -0.543 4.543 18 H 0.066 0.934 19 C 0.088 3.912 20 N -0.771 5.771 21 Si 0.904 3.096 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.265 1.265 25 C 0.057 3.943 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.087 0.913 35 H 0.028 0.972 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.047 0.953 43 H 0.048 0.952 44 H 0.386 0.614 45 H 0.266 0.734 46 H 0.030 0.970 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.345 -3.327 -3.909 19.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.097 0.903 4 C -0.145 4.145 5 C -0.108 4.108 6 H 0.099 0.901 7 C -0.203 4.203 8 C -0.070 4.070 9 N -0.242 5.242 10 C 0.007 3.993 11 C -0.236 4.236 12 C -0.194 4.194 13 C 0.022 3.978 14 N -0.410 5.410 15 C 0.359 3.641 16 O -0.470 6.470 17 C -0.581 4.581 18 H 0.084 0.916 19 C -0.131 4.131 20 N -0.400 5.400 21 Si 0.729 3.271 22 H -0.199 1.199 23 H -0.206 1.206 24 H -0.190 1.190 25 C -0.071 4.071 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.046 0.954 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.219 0.781 45 H 0.077 0.923 46 H 0.048 0.952 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.392 -3.597 -3.882 18.179 hybrid contribution -0.283 0.282 -0.080 0.407 sum -17.674 -3.315 -3.962 18.414 Atomic orbital electron populations 1.21782 0.95424 1.01412 1.01587 1.21168 0.94556 1.00632 0.94578 0.90264 1.21690 0.95495 0.99934 0.97379 1.21145 0.94889 1.00779 0.93982 0.90103 1.21774 1.01529 0.99669 0.97329 1.22218 1.01267 0.94187 0.89346 1.61998 1.06852 1.53840 1.01499 1.21334 0.95658 0.92317 0.90002 1.22411 1.00963 0.97755 1.02477 1.21857 1.00008 1.01035 0.96461 1.20894 0.89078 0.87798 1.00048 1.45952 1.08232 1.05644 1.81142 1.18185 0.79292 0.90263 0.76383 1.90585 1.54591 1.46580 1.55289 1.20882 0.91877 0.91980 1.53321 0.91588 1.25684 0.96817 0.97769 0.92791 1.70027 1.02313 1.31647 1.36010 0.86435 0.78517 0.83365 0.78776 1.19851 1.20586 1.18953 1.22199 0.88224 0.98493 0.98174 0.92729 0.92699 0.93093 0.92698 0.92243 0.92776 0.92253 0.93200 0.89520 0.95391 0.91898 0.92534 0.92454 0.91201 0.93054 0.92250 0.93522 0.93360 0.78117 0.92325 0.95194 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.20 37.16 0.34 -0.90 16 2 C -0.09 -0.96 2.88 -90.54 -0.26 -1.22 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.11 -1.15 4.57 -26.61 -0.12 -1.27 16 5 C -0.09 -1.13 2.88 -90.55 -0.26 -1.39 16 6 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 7 C -0.15 -1.68 9.20 37.15 0.34 -1.34 16 8 C 0.06 0.82 3.96 -3.84 -0.02 0.81 16 9 N -0.52 -7.23 4.16 -219.02 -0.91 -8.14 16 10 C 0.10 1.41 0.37 -131.60 -0.05 1.36 16 11 C -0.18 -2.22 7.79 37.16 0.29 -1.93 16 12 C -0.14 -1.84 8.08 37.16 0.30 -1.54 16 13 C 0.15 2.88 4.10 -4.04 -0.02 2.86 16 14 N -0.75 -17.10 5.13 -61.73 -0.32 -17.41 16 15 C 0.56 16.04 7.75 -12.99 -0.10 15.94 16 16 O -0.59 -19.33 15.02 5.20 0.08 -19.25 16 17 C -0.54 -15.66 9.54 -35.63 -0.34 -16.00 16 18 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 19 C 0.09 2.52 5.50 -17.37 -0.10 2.42 16 20 N -0.77 -23.56 11.83 55.55 0.66 -22.91 16 21 Si 0.90 20.58 29.56 -169.99 -5.02 15.55 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 25 C 0.06 0.66 3.93 -3.84 -0.02 0.64 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 1.52 5.90 -51.93 -0.31 1.21 16 35 H 0.03 0.38 6.71 -51.93 -0.35 0.03 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.63 6.54 -51.93 -0.34 0.29 16 38 H 0.06 0.74 6.63 -51.93 -0.34 0.39 16 39 H 0.07 1.03 6.86 -51.93 -0.36 0.68 16 40 H 0.05 0.59 6.28 -51.93 -0.33 0.26 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.98 6.22 -51.93 -0.32 0.66 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.39 8.09 7.13 -40.82 -0.29 7.80 16 45 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 46 H 0.03 0.34 6.63 -51.93 -0.34 0.00 16 47 H 0.08 0.84 6.01 -51.93 -0.31 0.53 16 LS Contribution 353.64 15.07 5.33 5.33 Total: -1.00 -33.09 353.64 -8.52 -41.61 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -8.33 Total: 6.77 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 0.00 Total: -1.55 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: -0.57 Total: -48.46 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.08 Total: -19.25 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.09 -8.52 -41.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153645941.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.405 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds