Wall clock time and date at job start Tue Mar 31 2020 06:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.53504 * 2 1 4 4 C 1.53124 * 109.49972 * 239.90924 * 2 1 3 5 5 C 1.53116 * 109.16057 * 182.40693 * 4 2 1 6 6 H 1.09011 * 109.50091 * 297.71035 * 5 4 2 7 7 C 1.52991 * 109.50487 * 177.63338 * 5 4 2 8 8 C 1.53033 * 109.28275 * 57.64593 * 5 4 2 9 9 N 1.46845 * 109.52649 * 300.82792 * 8 5 4 10 10 C 1.46897 * 111.00191 * 185.83703 * 9 8 5 11 11 C 1.53000 * 109.47145 * 295.78498 * 10 9 8 12 12 C 1.53003 * 109.47487 * 175.78767 * 10 9 8 13 13 C 1.53003 * 109.47533 * 55.78601 * 10 9 8 14 14 N 1.46499 * 109.46708 * 59.99841 * 13 10 9 15 15 C 1.34784 * 119.99893 * 180.02562 * 14 13 10 16 16 O 1.21682 * 119.99954 * 359.97438 * 15 14 13 17 17 C 1.46368 * 119.99916 * 179.72943 * 15 14 13 18 18 H 1.07998 * 120.00437 * 359.97438 * 17 15 14 19 19 C 1.40055 * 119.99853 * 179.97438 * 17 15 14 20 20 N 1.30662 * 119.99894 * 359.97438 * 19 17 15 21 21 Si 1.86805 * 119.99877 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46909 * 89.99994 * 21 19 17 23 23 H 1.48496 * 109.47072 * 210.00005 * 21 19 17 24 24 H 1.48500 * 109.46867 * 330.00008 * 21 19 17 25 25 C 1.46845 * 111.20103 * 61.73518 * 9 8 5 26 26 H 1.09006 * 109.46865 * 299.90057 * 1 2 3 27 27 H 1.08999 * 109.47703 * 59.89014 * 1 2 3 28 28 H 1.08998 * 109.47634 * 179.89885 * 1 2 3 29 29 H 1.09002 * 109.51590 * 302.30724 * 4 2 1 30 30 H 1.08994 * 109.52479 * 62.49596 * 4 2 1 31 31 H 1.08996 * 109.47502 * 59.99380 * 7 5 4 32 32 H 1.09002 * 109.47588 * 179.97438 * 7 5 4 33 33 H 1.09000 * 109.47006 * 299.99360 * 7 5 4 34 34 H 1.08996 * 109.46797 * 180.80632 * 8 5 4 35 35 H 1.09004 * 109.46060 * 60.84109 * 8 5 4 36 36 H 1.08999 * 109.47677 * 179.97438 * 11 10 9 37 37 H 1.08995 * 109.47242 * 300.00096 * 11 10 9 38 38 H 1.09005 * 109.47033 * 60.00388 * 11 10 9 39 39 H 1.09007 * 109.46830 * 300.00201 * 12 10 9 40 40 H 1.09005 * 109.46980 * 59.99913 * 12 10 9 41 41 H 1.08994 * 109.47292 * 179.97438 * 12 10 9 42 42 H 1.08998 * 109.46692 * 300.00343 * 13 10 9 43 43 H 1.08994 * 109.47584 * 180.02562 * 13 10 9 44 44 H 0.97005 * 120.00261 * 0.02562 * 14 13 10 45 45 H 0.97000 * 120.00244 * 179.97438 * 20 19 17 46 46 H 1.09005 * 109.46226 * 58.27512 * 25 9 8 47 47 H 1.09003 * 109.46567 * 178.25596 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0411 -0.7237 -1.2489 5 6 3.5711 -0.7719 -1.2110 6 1 3.9677 0.2433 -1.2299 7 6 4.0880 -1.5450 -2.4257 8 6 4.0229 -1.4730 0.0721 9 7 3.5093 -0.7422 1.2377 10 6 4.0373 -1.3060 2.4871 11 6 3.5296 -2.7396 2.6544 12 6 3.5658 -0.4569 3.6693 13 6 5.5666 -1.3089 2.4392 14 7 6.0527 0.0637 2.2791 15 6 7.3768 0.3061 2.2112 16 8 8.1685 -0.6151 2.2835 17 6 7.8623 1.6770 2.0453 18 1 7.1595 2.4942 1.9767 19 6 9.2382 1.9289 1.9753 20 7 10.0884 0.9403 2.0587 21 14 9.8578 3.6783 1.7628 22 1 10.0645 4.2958 3.0974 23 1 11.1439 3.6612 1.0207 24 1 8.8574 4.4686 1.0012 25 6 2.0410 -0.7235 1.2479 26 1 -0.3633 0.5123 0.8909 27 1 -0.3634 0.5155 -0.8890 28 1 -0.3634 -1.0276 -0.0018 29 1 1.6451 -1.7390 -1.2691 30 1 1.7155 -0.1869 -2.1398 31 1 3.7630 -1.0466 -3.3389 32 1 5.1772 -1.5787 -2.3985 33 1 3.6923 -2.5605 -2.4054 34 1 5.1120 -1.4962 0.1091 35 1 3.6375 -2.4925 0.0839 36 1 3.9217 -3.1582 3.5813 37 1 2.4402 -2.7375 2.6886 38 1 3.8656 -3.3446 1.8123 39 1 3.9275 0.5645 3.5501 40 1 2.4762 -0.4548 3.7035 41 1 3.9572 -0.8755 4.5964 42 1 5.9025 -1.9139 1.5971 43 1 5.9584 -1.7277 3.3661 44 1 5.4216 0.7982 2.2218 45 1 11.0414 1.1146 2.0099 46 1 1.6647 -1.7465 1.2542 47 1 1.6906 -0.2022 2.1388 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153645941.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:02 Heat of formation + Delta-G solvation = -78.856295 kcal Electronic energy + Delta-G solvation = -24026.157669 eV Core-core repulsion = 20820.904089 eV Total energy + Delta-G solvation = -3205.253581 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.19938 -39.20157 -37.46497 -34.78955 -34.41231 -33.92777 -31.89541 -29.14147 -28.55930 -27.48478 -27.33357 -26.06919 -24.83594 -21.75740 -21.50022 -20.73052 -19.89220 -18.96862 -17.43749 -17.30640 -16.45669 -16.05643 -15.90747 -15.53876 -15.33128 -15.18765 -15.00165 -14.53731 -14.07633 -13.93997 -13.82331 -13.60455 -13.39757 -13.31070 -13.06838 -12.96315 -12.81231 -12.73627 -12.60112 -12.54974 -12.39015 -12.25940 -12.09971 -11.98461 -11.72649 -11.49704 -11.41812 -11.02110 -10.94886 -10.90149 -9.82420 -9.34412 -9.09846 -8.25731 -6.80813 1.39947 1.41968 1.56881 2.26518 2.51121 2.84487 3.28777 3.66784 3.71125 3.78562 3.91338 4.02362 4.05710 4.17100 4.20774 4.40317 4.44760 4.60018 4.62804 4.64291 4.68578 4.75361 4.79200 4.80839 4.85826 4.87040 4.94706 4.97031 5.00907 5.02321 5.09739 5.16328 5.19638 5.26167 5.33698 5.34454 5.39792 5.40198 5.50650 5.62457 5.93926 6.20902 6.31044 6.32343 6.41239 6.90446 7.66132 8.55280 8.72632 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017880 B = 0.004756 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.644579 B = 5885.698485 C = 6308.681162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 H 0.064 0.936 4 C -0.100 4.100 5 C -0.088 4.088 6 H 0.057 0.943 7 C -0.142 4.142 8 C 0.063 3.937 9 N -0.531 5.531 10 C 0.105 3.895 11 C -0.170 4.170 12 C -0.132 4.132 13 C 0.150 3.850 14 N -0.736 5.736 15 C 0.538 3.462 16 O -0.638 6.638 17 C -0.572 4.572 18 H 0.083 0.917 19 C 0.030 3.970 20 N -0.824 5.824 21 Si 0.996 3.004 22 H -0.261 1.261 23 H -0.273 1.273 24 H -0.250 1.250 25 C 0.058 3.942 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.037 0.963 33 H 0.061 0.939 34 H 0.043 0.957 35 H 0.037 0.963 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.058 0.942 42 H 0.026 0.974 43 H 0.030 0.970 44 H 0.396 0.604 45 H 0.273 0.727 46 H 0.040 0.960 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.076 -2.040 -4.215 21.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 H 0.083 0.917 4 C -0.138 4.138 5 C -0.107 4.107 6 H 0.075 0.925 7 C -0.200 4.200 8 C -0.064 4.064 9 N -0.255 5.255 10 C 0.016 3.984 11 C -0.229 4.229 12 C -0.190 4.190 13 C 0.024 3.976 14 N -0.390 5.390 15 C 0.342 3.658 16 O -0.526 6.526 17 C -0.609 4.609 18 H 0.101 0.899 19 C -0.185 4.185 20 N -0.454 5.454 21 Si 0.815 3.185 22 H -0.185 1.185 23 H -0.198 1.198 24 H -0.174 1.174 25 C -0.069 4.069 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.044 0.956 43 H 0.048 0.952 44 H 0.231 0.769 45 H 0.083 0.917 46 H 0.059 0.941 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -20.196 -2.307 -4.186 20.754 hybrid contribution 0.548 -0.175 0.011 0.576 sum -19.648 -2.482 -4.175 20.239 Atomic orbital electron populations 1.21722 0.93338 1.02155 1.02330 1.21156 0.96160 0.99536 0.93913 0.91714 1.21639 0.93271 1.00748 0.98096 1.21115 0.96804 0.99249 0.93494 0.92495 1.21749 1.00191 1.00470 0.97558 1.22079 0.98700 0.95114 0.90551 1.61972 1.08848 1.53863 1.00801 1.21188 0.91750 0.94383 0.91127 1.22346 1.02395 0.95785 1.02408 1.21830 1.01863 0.99604 0.95660 1.20983 0.93066 0.85393 0.98115 1.45595 1.06599 1.07465 1.79384 1.18587 0.80817 0.90268 0.76151 1.90536 1.56474 1.47906 1.57723 1.21391 0.93184 0.92420 1.53855 0.89924 1.26941 0.96643 1.03470 0.91428 1.70197 1.03060 1.35127 1.36977 0.85057 0.78046 0.76022 0.79377 1.18510 1.19780 1.17378 1.22294 0.86038 0.99367 0.99206 0.92081 0.91972 0.92300 0.91703 0.91062 0.91220 0.94362 0.91969 0.93808 0.94469 0.91588 0.90003 0.93078 0.92799 0.90059 0.92250 0.95622 0.95160 0.76949 0.91728 0.94149 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.20 71.98 0.66 -1.22 16 2 C -0.09 -1.66 2.88 -10.74 -0.03 -1.69 16 3 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 4 C -0.10 -1.91 4.57 30.67 0.14 -1.77 16 5 C -0.09 -2.21 2.88 -10.75 -0.03 -2.24 16 6 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 7 C -0.14 -3.25 9.20 71.98 0.66 -2.59 16 8 C 0.06 1.84 3.96 86.32 0.34 2.18 16 9 N -0.53 -14.48 4.16 -846.86 -3.52 -18.00 16 10 C 0.11 3.03 0.37 3.53 0.00 3.03 16 11 C -0.17 -4.03 7.79 71.98 0.56 -3.47 16 12 C -0.13 -3.38 8.08 71.98 0.58 -2.80 16 13 C 0.15 6.14 4.10 86.38 0.35 6.49 16 14 N -0.74 -34.88 5.13 -467.42 -2.40 -37.27 16 15 C 0.54 32.56 7.75 86.36 0.67 33.22 16 16 O -0.64 -44.48 15.02 -4.29 -0.06 -44.54 16 17 C -0.57 -33.70 9.54 24.83 0.24 -33.47 16 18 H 0.08 4.43 7.85 -2.91 -0.02 4.40 16 19 C 0.03 1.72 5.50 85.31 0.47 2.19 16 20 N -0.82 -52.00 11.83 21.84 0.26 -51.74 16 21 Si 1.00 42.32 29.56 68.60 2.03 44.35 16 22 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 24 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 25 C 0.06 1.19 3.93 86.32 0.34 1.53 16 26 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.04 1.64 5.90 -2.39 -0.01 1.63 16 35 H 0.04 1.00 6.71 -2.38 -0.02 0.98 16 36 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.08 1.55 6.54 -2.39 -0.02 1.54 16 38 H 0.05 1.27 6.63 -2.38 -0.02 1.26 16 39 H 0.05 1.55 6.86 -2.38 -0.02 1.53 16 40 H 0.08 1.60 6.28 -2.38 -0.01 1.59 16 41 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.03 1.16 6.22 -2.39 -0.01 1.15 16 43 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.40 17.05 7.13 -92.70 -0.66 16.39 16 45 H 0.27 15.59 8.29 -92.71 -0.77 14.82 16 46 H 0.04 0.77 6.63 -2.38 -0.02 0.75 16 47 H 0.08 1.60 6.01 -2.39 -0.01 1.58 16 Total: -1.00 -75.70 353.64 1.54 -74.16 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: 0.28 Total: 33.64 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 4.96 Total: -0.59 kcal Atomic # 7 Polarization: -101.36 SS G_CDS: -5.66 Total: -107.01 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -0.06 Total: -44.54 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -75.70 1.54 -74.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153645941.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.699 kcal (2) G-P(sol) polarization free energy of solvation -75.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds