Wall clock time and date at job start Tue Mar 31 2020 06:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.49996 * 2 1 4 4 C 1.53117 * 109.50233 * 120.07960 * 2 1 3 5 5 C 1.53121 * 109.15985 * 62.32903 * 4 2 1 6 6 H 1.09002 * 109.50413 * 297.70856 * 5 4 2 7 7 C 1.53006 * 109.50252 * 177.59258 * 5 4 2 8 8 C 1.53033 * 109.27853 * 57.65051 * 5 4 2 9 9 N 1.46845 * 109.52591 * 300.82027 * 8 5 4 10 10 C 1.46903 * 111.00064 * 185.84177 * 9 8 5 11 11 C 1.52998 * 109.47179 * 58.73520 * 10 9 8 12 12 C 1.52997 * 109.46831 * 298.73332 * 10 9 8 13 13 C 1.53003 * 109.46873 * 178.73593 * 10 9 8 14 14 N 1.46500 * 109.47183 * 305.45126 * 13 10 9 15 15 C 1.34777 * 120.00528 * 184.86486 * 14 13 10 16 16 O 1.21687 * 119.99116 * 359.72412 * 15 14 13 17 17 C 1.46366 * 120.00237 * 179.72754 * 15 14 13 18 18 H 1.07993 * 120.00492 * 359.97438 * 17 15 14 19 19 C 1.40048 * 119.99937 * 179.97438 * 17 15 14 20 20 N 1.30676 * 120.00067 * 0.02562 * 19 17 15 21 21 Si 1.86802 * 120.00203 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47262 * 59.99960 * 21 19 17 23 23 H 1.48498 * 109.46943 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46889 * 299.99765 * 21 19 17 25 25 C 1.46845 * 111.19990 * 61.74278 * 9 8 5 26 26 H 1.08996 * 109.47206 * 299.91552 * 1 2 3 27 27 H 1.08999 * 109.47633 * 59.91858 * 1 2 3 28 28 H 1.09005 * 109.46989 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.52662 * 302.41779 * 4 2 1 30 30 H 1.08995 * 109.51782 * 182.23066 * 4 2 1 31 31 H 1.09000 * 109.46739 * 300.19541 * 7 5 4 32 32 H 1.09001 * 109.46932 * 60.19402 * 7 5 4 33 33 H 1.09001 * 109.46867 * 180.19587 * 7 5 4 34 34 H 1.09004 * 109.46486 * 180.80291 * 8 5 4 35 35 H 1.08998 * 109.46432 * 60.83709 * 8 5 4 36 36 H 1.09003 * 109.46885 * 180.02562 * 11 10 9 37 37 H 1.09000 * 109.46849 * 299.99371 * 11 10 9 38 38 H 1.08994 * 109.47384 * 59.99809 * 11 10 9 39 39 H 1.09006 * 109.47203 * 299.99781 * 12 10 9 40 40 H 1.08992 * 109.47568 * 60.00579 * 12 10 9 41 41 H 1.09008 * 109.46804 * 180.02562 * 12 10 9 42 42 H 1.09000 * 109.47206 * 185.45814 * 13 10 9 43 43 H 1.08995 * 109.47640 * 65.45318 * 13 10 9 44 44 H 0.97010 * 119.99798 * 4.59220 * 14 13 10 45 45 H 0.96998 * 120.00027 * 180.02562 * 20 19 17 46 46 H 1.09005 * 109.45814 * 58.27249 * 25 9 8 47 47 H 1.08995 * 109.46429 * 178.24403 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7234 1.2490 5 6 1.5758 -2.1817 1.2109 6 1 0.4865 -2.2167 1.2296 7 6 2.1326 -2.9274 2.4254 8 6 2.0862 -2.8416 -0.0720 9 7 1.5691 -2.1135 -1.2377 10 6 1.9247 -2.7995 -2.4871 11 6 1.3534 -4.2188 -2.4700 12 6 3.4477 -2.8642 -2.6178 13 6 1.3431 -2.0299 -3.6748 14 7 -0.0989 -1.8550 -3.4844 15 6 -0.8431 -1.2886 -4.4550 16 8 -0.3162 -0.9179 -5.4873 17 6 -2.2847 -1.1193 -4.2672 18 1 -2.7523 -1.4486 -3.3511 19 6 -3.0578 -0.5302 -5.2755 20 7 -2.4921 -0.1322 -6.3842 21 14 -4.8979 -0.3148 -5.0361 22 1 -5.1457 0.5409 -3.8480 23 1 -5.4816 0.3285 -6.2405 24 1 -5.5290 -1.6431 -4.8300 25 6 2.0417 -0.7232 -1.2479 26 1 -0.3633 0.5125 0.8907 27 1 -0.3634 0.5151 -0.8892 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6437 -0.2373 2.1398 30 1 3.1304 -0.6891 1.2695 31 1 3.2218 -2.8903 2.4065 32 1 1.7688 -2.4569 3.3388 33 1 1.8039 -3.9662 2.3959 34 1 1.7446 -3.8761 -0.1091 35 1 3.1759 -2.8186 -0.0836 36 1 1.6177 -4.7279 -3.3969 37 1 1.7679 -4.7670 -1.6240 38 1 0.2685 -4.1727 -2.3769 39 1 3.8546 -1.8530 -2.6300 40 1 3.8620 -3.4125 -1.7718 41 1 3.7115 -3.3729 -3.5451 42 1 1.5231 -2.5888 -4.5931 43 1 1.8215 -1.0531 -3.7442 44 1 -0.5189 -2.1505 -2.6614 45 1 -3.0275 0.2761 -7.0824 46 1 3.1316 -0.7102 -1.2539 47 1 1.6677 -0.2190 -2.1389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153646054.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:05 Heat of formation + Delta-G solvation = -53.078052 kcal Electronic energy + Delta-G solvation = -24313.826771 eV Core-core repulsion = 21109.691019 eV Total energy + Delta-G solvation = -3204.135752 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.14293 -37.35566 -36.04927 -33.13641 -32.69526 -31.94750 -30.51593 -27.77687 -26.95700 -26.51663 -26.06891 -24.65305 -23.67595 -21.30111 -19.57762 -19.06386 -18.30600 -17.00810 -16.13465 -15.25969 -14.97211 -14.73049 -14.43149 -14.22081 -14.09349 -13.85266 -13.73847 -13.27500 -12.98155 -12.73843 -12.50634 -12.27675 -12.03661 -11.88586 -11.82832 -11.66450 -11.37112 -11.33113 -11.12751 -11.01913 -10.91748 -10.77718 -10.70460 -10.47499 -10.35936 -10.29102 -10.14487 -9.94979 -9.83079 -8.75023 -7.99483 -7.48338 -7.26493 -6.08043 -4.51802 3.21657 3.26200 3.28255 3.97786 4.19584 4.70265 4.72423 4.82000 4.83923 5.03126 5.08540 5.20589 5.24682 5.34992 5.45985 5.49818 5.53036 5.60733 5.64462 5.72509 5.74632 5.78018 5.84800 5.89079 5.93835 5.99731 6.03912 6.08763 6.12055 6.13951 6.18859 6.23244 6.35705 6.40665 6.45815 6.48206 6.62039 6.64487 6.81120 7.37966 7.39441 7.53512 8.12666 8.31269 8.48476 9.13530 9.75411 10.72203 10.93261 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019392 B = 0.005053 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.566427 B = 5539.735195 C = 6213.797853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.087 4.087 3 H 0.066 0.934 4 C -0.108 4.108 5 C -0.091 4.091 6 H 0.082 0.918 7 C -0.145 4.145 8 C 0.057 3.943 9 N -0.515 5.515 10 C 0.096 3.904 11 C -0.136 4.136 12 C -0.177 4.177 13 C 0.149 3.851 14 N -0.753 5.753 15 C 0.556 3.444 16 O -0.588 6.588 17 C -0.543 4.543 18 H 0.065 0.935 19 C 0.089 3.911 20 N -0.771 5.771 21 Si 0.904 3.096 22 H -0.269 1.269 23 H -0.282 1.282 24 H -0.269 1.269 25 C 0.056 3.944 26 H 0.039 0.961 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.029 0.971 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.042 0.958 44 H 0.388 0.612 45 H 0.266 0.734 46 H 0.027 0.973 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.396 -4.870 15.684 18.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.106 4.106 3 H 0.084 0.916 4 C -0.146 4.146 5 C -0.110 4.110 6 H 0.101 0.899 7 C -0.203 4.203 8 C -0.071 4.071 9 N -0.239 5.239 10 C 0.007 3.993 11 C -0.193 4.193 12 C -0.236 4.236 13 C 0.023 3.977 14 N -0.409 5.409 15 C 0.359 3.641 16 O -0.471 6.471 17 C -0.580 4.580 18 H 0.084 0.916 19 C -0.130 4.130 20 N -0.400 5.400 21 Si 0.729 3.271 22 H -0.194 1.194 23 H -0.207 1.207 24 H -0.194 1.194 25 C -0.071 4.071 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.221 0.779 45 H 0.077 0.923 46 H 0.045 0.955 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.258 -4.497 14.752 17.988 hybrid contribution -0.093 0.003 0.440 0.450 sum 9.165 -4.495 15.192 18.303 Atomic orbital electron populations 1.21735 0.93977 1.02965 1.00853 1.21143 0.97339 0.98103 0.93980 0.91571 1.21663 0.99756 0.95349 0.97840 1.21205 1.01527 0.94583 0.93661 0.89928 1.21794 1.00636 1.00146 0.97698 1.22203 0.96811 0.98034 0.90063 1.61986 1.59230 1.01641 1.01008 1.21341 0.92796 0.94875 0.90316 1.21860 1.02328 0.94118 1.01041 1.22411 0.97081 1.02014 1.02081 1.20864 0.85004 0.97534 0.94295 1.45927 1.05334 1.68254 1.21366 1.18174 0.87304 0.76898 0.81728 1.90588 1.73902 1.54066 1.28562 1.20837 0.91400 1.42509 1.03289 0.91644 1.25680 0.99577 0.93429 0.94349 1.70022 1.36147 1.29305 1.04554 0.86505 0.83384 0.79039 0.78191 1.19358 1.20713 1.19382 1.22191 0.96534 0.89212 0.99183 0.94166 0.92276 0.91127 0.92246 0.92835 0.93149 0.92734 0.92762 0.90646 0.95243 0.92326 0.93082 0.91193 0.92448 0.92584 0.91942 0.93098 0.94015 0.77935 0.92285 0.95461 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.75 37.16 0.33 -1.58 16 2 C -0.09 -1.08 3.21 -90.54 -0.29 -1.37 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.11 -1.15 4.79 -26.61 -0.13 -1.27 16 5 C -0.09 -0.94 2.53 -90.54 -0.23 -1.17 16 6 H 0.08 0.95 6.58 -51.93 -0.34 0.61 16 7 C -0.14 -1.24 9.20 37.16 0.34 -0.90 16 8 C 0.06 0.64 3.94 -3.84 -0.02 0.63 16 9 N -0.51 -6.92 3.11 -219.02 -0.68 -7.60 16 10 C 0.10 1.38 0.37 -131.60 -0.05 1.33 16 11 C -0.14 -1.83 8.09 37.16 0.30 -1.53 16 12 C -0.18 -2.20 7.79 37.16 0.29 -1.91 16 13 C 0.15 2.87 3.93 -4.04 -0.02 2.86 16 14 N -0.75 -16.83 5.08 -61.72 -0.31 -17.15 16 15 C 0.56 15.92 7.75 -12.99 -0.10 15.82 16 16 O -0.59 -19.28 15.02 5.20 0.08 -19.20 16 17 C -0.54 -15.53 9.54 -35.64 -0.34 -15.87 16 18 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 19 C 0.09 2.52 5.50 -17.36 -0.10 2.42 16 20 N -0.77 -23.52 11.83 55.55 0.66 -22.86 16 21 Si 0.90 20.53 29.56 -169.99 -5.02 15.50 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 C 0.06 0.79 4.11 -3.83 -0.02 0.77 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 1.02 6.01 -51.93 -0.31 0.70 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.83 5.97 -51.93 -0.31 0.52 16 35 H 0.03 0.33 6.65 -51.93 -0.35 -0.01 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.58 6.26 -51.93 -0.32 0.26 16 38 H 0.07 1.04 7.31 -51.93 -0.38 0.66 16 39 H 0.06 0.73 6.60 -51.93 -0.34 0.39 16 40 H 0.06 0.62 6.56 -51.93 -0.34 0.28 16 41 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16 42 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.04 0.86 6.55 -51.93 -0.34 0.52 16 44 H 0.39 8.02 7.40 -40.82 -0.30 7.72 16 45 H 0.27 7.42 8.29 -40.82 -0.34 7.08 16 46 H 0.03 0.36 6.68 -51.93 -0.35 0.02 16 47 H 0.09 1.47 6.05 -51.93 -0.31 1.16 16 LS Contribution 349.74 15.07 5.27 5.27 Total: -1.00 -32.68 349.74 -8.23 -40.91 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -8.20 Total: 6.90 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -0.02 Total: -1.77 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -0.34 Total: -47.61 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: 0.08 Total: -19.20 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.68 -8.23 -40.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153646054.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.165 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds