Wall clock time and date at job start Tue Mar 31 2020 06:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.50523 * 2 1 4 4 C 1.53120 * 109.50421 * 239.92617 * 2 1 3 5 5 C 1.53123 * 109.16108 * 297.71189 * 4 2 1 6 6 H 1.08996 * 109.50349 * 62.28404 * 5 4 2 7 7 C 1.52998 * 109.50770 * 182.40756 * 5 4 2 8 8 C 1.53045 * 109.27705 * 302.34820 * 5 4 2 9 9 N 1.46850 * 109.52444 * 59.17618 * 8 5 4 10 10 C 1.46904 * 110.99717 * 174.16334 * 9 8 5 11 11 C 1.52994 * 109.47061 * 62.95369 * 10 9 8 12 12 C 1.52999 * 109.46740 * 182.95365 * 10 9 8 13 13 C 1.52992 * 109.46930 * 302.95000 * 10 9 8 14 14 N 1.46505 * 109.47716 * 305.39975 * 13 10 9 15 15 C 1.34767 * 120.00465 * 185.02064 * 14 13 10 16 16 O 1.21688 * 119.99853 * 359.97438 * 15 14 13 17 17 C 1.46368 * 120.00475 * 179.97438 * 15 14 13 18 18 H 1.08012 * 119.99706 * 359.97438 * 17 15 14 19 19 C 1.40049 * 120.00689 * 180.02562 * 17 15 14 20 20 N 1.30673 * 119.99444 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 120.00374 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46953 * 59.99762 * 21 19 17 23 23 H 1.48495 * 109.46972 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.46902 * 299.99880 * 21 19 17 25 25 C 1.46850 * 111.19573 * 298.26064 * 9 8 5 26 26 H 1.09000 * 109.46819 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46902 * 300.07194 * 1 2 3 28 28 H 1.08998 * 109.47025 * 60.07983 * 1 2 3 29 29 H 1.08998 * 109.52471 * 57.61430 * 4 2 1 30 30 H 1.08999 * 109.52325 * 177.81033 * 4 2 1 31 31 H 1.09004 * 109.47266 * 59.99484 * 7 5 4 32 32 H 1.08998 * 109.47402 * 179.97438 * 7 5 4 33 33 H 1.09003 * 109.46604 * 299.99553 * 7 5 4 34 34 H 1.09006 * 109.46090 * 299.16409 * 8 5 4 35 35 H 1.09000 * 109.45500 * 179.18795 * 8 5 4 36 36 H 1.08997 * 109.47621 * 60.00169 * 11 10 9 37 37 H 1.09004 * 109.46779 * 180.02562 * 11 10 9 38 38 H 1.09004 * 109.47319 * 299.99439 * 11 10 9 39 39 H 1.09002 * 109.47378 * 59.99625 * 12 10 9 40 40 H 1.08999 * 109.47002 * 180.02562 * 12 10 9 41 41 H 1.09005 * 109.47143 * 300.00013 * 12 10 9 42 42 H 1.09000 * 109.47184 * 65.39963 * 13 10 9 43 43 H 1.09004 * 109.46979 * 185.39861 * 13 10 9 44 44 H 0.97000 * 119.99241 * 5.01272 * 14 13 10 45 45 H 0.97005 * 119.99967 * 180.02562 * 20 19 17 46 46 H 1.09006 * 109.46278 * 301.72322 * 25 9 8 47 47 H 1.09005 * 109.45834 * 181.75956 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7233 -1.2490 5 6 1.5750 -2.1813 -1.2117 6 1 0.4858 -2.2157 -1.2307 7 6 2.1318 -2.9270 -2.4261 8 6 2.0847 -2.8420 0.0713 9 7 1.5676 -2.1139 1.2371 10 6 1.9224 -2.8006 2.4864 11 6 3.4446 -2.8290 2.6381 12 6 1.3056 -2.0545 3.6712 13 6 1.3865 -4.2331 2.4509 14 7 -0.0525 -4.2097 2.1769 15 6 -0.7616 -5.3555 2.1994 16 8 -0.2064 -6.4098 2.4468 17 6 -2.1993 -5.3320 1.9262 18 1 -2.6921 -4.3962 1.7070 19 6 -2.9363 -6.5227 1.9501 20 7 -2.3402 -7.6548 2.2158 21 14 -4.7714 -6.4925 1.6021 22 1 -5.0080 -5.9514 0.2396 23 1 -5.3141 -7.8721 1.6875 24 1 -5.4506 -5.6301 2.6021 25 6 2.0410 -0.7239 1.2477 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5149 0.8893 28 1 -0.3633 0.5126 -0.8907 29 1 1.6442 -0.2367 -2.1399 30 1 3.1305 -0.6896 -1.2692 31 1 3.2211 -2.8935 -2.4051 32 1 1.7999 -3.9649 -2.3987 33 1 1.7712 -2.4539 -3.3395 34 1 3.1744 -2.8196 0.0832 35 1 1.7422 -3.8762 0.1078 36 1 3.8264 -1.8084 2.6634 37 1 3.7078 -3.3389 3.5648 38 1 3.8840 -3.3605 1.7940 39 1 0.2212 -2.0342 3.5631 40 1 1.5693 -2.5637 4.5982 41 1 1.6874 -1.0338 3.6964 42 1 1.8966 -4.7925 1.6666 43 1 1.5653 -4.7119 3.4137 44 1 -0.4949 -3.3693 1.9794 45 1 -2.8505 -8.4795 2.2320 46 1 3.1309 -0.7114 1.2541 47 1 1.6670 -0.2197 2.1389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153646132.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:08 Heat of formation + Delta-G solvation = -53.234063 kcal Electronic energy + Delta-G solvation = -24309.588094 eV Core-core repulsion = 21105.445577 eV Total energy + Delta-G solvation = -3204.142517 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.14413 -37.36410 -36.04995 -33.17590 -32.63135 -31.90949 -30.61503 -27.66244 -27.01186 -26.57437 -26.11206 -24.57058 -23.74369 -21.25852 -19.56766 -19.08695 -18.30022 -17.02769 -16.14017 -15.24188 -15.07205 -14.65313 -14.44676 -14.22001 -14.10044 -13.86859 -13.67940 -13.37208 -12.90271 -12.73512 -12.51731 -12.21165 -12.06109 -12.02321 -11.68557 -11.54514 -11.48669 -11.35238 -11.13562 -11.04625 -10.94960 -10.79653 -10.69519 -10.52873 -10.35723 -10.24599 -10.13480 -10.03050 -9.80192 -8.75378 -7.99869 -7.48772 -7.27196 -6.08396 -4.52208 3.21471 3.25968 3.28074 3.97967 4.19352 4.69946 4.74386 4.80882 4.88597 4.97961 5.12048 5.18174 5.25866 5.31825 5.51652 5.52105 5.57196 5.62609 5.67605 5.74349 5.75989 5.80301 5.82320 5.86666 5.93007 6.00560 6.02394 6.05188 6.10996 6.16706 6.20081 6.24232 6.28075 6.38014 6.43312 6.47875 6.59439 6.64649 6.69051 7.38058 7.38808 7.53125 8.12180 8.30670 8.47968 9.13112 9.74848 10.71801 10.92755 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016990 B = 0.005211 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.615665 B = 5371.726288 C = 5883.684814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 H 0.064 0.936 4 C -0.109 4.109 5 C -0.090 4.090 6 H 0.084 0.916 7 C -0.146 4.146 8 C 0.058 3.942 9 N -0.515 5.515 10 C 0.097 3.903 11 C -0.177 4.177 12 C -0.136 4.136 13 C 0.149 3.851 14 N -0.753 5.753 15 C 0.555 3.445 16 O -0.587 6.587 17 C -0.543 4.543 18 H 0.065 0.935 19 C 0.088 3.912 20 N -0.771 5.771 21 Si 0.904 3.096 22 H -0.269 1.269 23 H -0.282 1.282 24 H -0.269 1.269 25 C 0.055 3.945 26 H 0.076 0.924 27 H 0.048 0.952 28 H 0.042 0.958 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.028 0.972 35 H 0.086 0.914 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.042 0.958 43 H 0.051 0.949 44 H 0.388 0.612 45 H 0.267 0.733 46 H 0.029 0.971 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.989 15.419 -4.459 18.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.106 4.106 3 H 0.083 0.917 4 C -0.146 4.146 5 C -0.109 4.109 6 H 0.102 0.898 7 C -0.204 4.204 8 C -0.070 4.070 9 N -0.239 5.239 10 C 0.007 3.993 11 C -0.236 4.236 12 C -0.193 4.193 13 C 0.023 3.977 14 N -0.409 5.409 15 C 0.359 3.641 16 O -0.471 6.471 17 C -0.581 4.581 18 H 0.084 0.916 19 C -0.131 4.131 20 N -0.400 5.400 21 Si 0.729 3.271 22 H -0.194 1.194 23 H -0.207 1.207 24 H -0.194 1.194 25 C -0.073 4.073 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.221 0.779 45 H 0.077 0.923 46 H 0.047 0.953 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.878 14.434 -4.274 17.477 hybrid contribution -0.102 0.409 -0.220 0.476 sum 8.777 14.843 -4.494 17.820 Atomic orbital electron populations 1.21764 0.94309 1.03366 1.00302 1.21146 0.97055 0.97928 0.94469 0.91717 1.21669 0.99789 0.95701 0.97484 1.21189 1.01733 0.94029 0.93914 0.89773 1.21785 1.00425 1.00730 0.97419 1.22213 0.96422 0.98985 0.89365 1.61992 1.59267 1.01175 1.01444 1.21337 0.92806 0.95139 0.90034 1.22411 0.97099 1.01603 1.02477 1.21859 1.02202 0.98870 0.96396 1.20868 0.85234 0.91866 0.99748 1.45929 1.06004 1.10899 1.78101 1.18175 0.87492 0.81502 0.76956 1.90588 1.72183 1.30495 1.53831 1.20845 0.92009 0.94135 1.51082 0.91638 1.25685 0.99461 0.95027 0.92908 1.70024 1.36242 0.98449 1.35297 0.86495 0.83369 0.77663 0.79537 1.19371 1.20700 1.19370 1.22188 0.96886 0.89877 0.98309 0.90541 0.93262 0.93881 0.92239 0.92795 0.93254 0.92298 0.92803 0.95399 0.89595 0.92581 0.91937 0.92444 0.91174 0.92339 0.93089 0.94023 0.93055 0.77935 0.92275 0.95284 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.75 37.16 0.33 -1.25 16 2 C -0.09 -0.91 3.21 -90.54 -0.29 -1.20 16 3 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 4 C -0.11 -1.15 4.79 -26.61 -0.13 -1.27 16 5 C -0.09 -1.11 2.53 -90.53 -0.23 -1.34 16 6 H 0.08 1.17 6.58 -51.93 -0.34 0.83 16 7 C -0.15 -1.65 9.20 37.16 0.34 -1.31 16 8 C 0.06 0.80 3.95 -3.83 -0.02 0.79 16 9 N -0.51 -6.92 3.11 -219.01 -0.68 -7.60 16 10 C 0.10 1.39 0.37 -131.61 -0.05 1.34 16 11 C -0.18 -2.20 7.79 37.15 0.29 -1.91 16 12 C -0.14 -1.83 8.09 37.16 0.30 -1.53 16 13 C 0.15 2.87 3.94 -4.04 -0.02 2.86 16 14 N -0.75 -16.91 5.08 -61.72 -0.31 -17.22 16 15 C 0.56 15.96 7.75 -12.99 -0.10 15.86 16 16 O -0.59 -19.30 15.02 5.20 0.08 -19.22 16 17 C -0.54 -15.58 9.54 -35.63 -0.34 -15.92 16 18 H 0.07 1.73 7.85 -52.48 -0.41 1.32 16 19 C 0.09 2.51 5.50 -17.37 -0.10 2.41 16 20 N -0.77 -23.54 11.83 55.55 0.66 -22.88 16 21 Si 0.90 20.54 29.56 -169.99 -5.02 15.52 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 C 0.06 0.63 4.09 -3.83 -0.02 0.61 16 26 H 0.08 1.02 6.01 -51.93 -0.31 0.71 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.03 0.37 6.68 -51.93 -0.35 0.02 16 35 H 0.09 1.46 6.05 -51.93 -0.31 1.14 16 36 H 0.06 0.62 6.56 -51.93 -0.34 0.28 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.73 6.60 -51.93 -0.34 0.39 16 39 H 0.07 1.05 7.32 -51.93 -0.38 0.67 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.58 6.26 -51.93 -0.32 0.26 16 42 H 0.04 0.86 6.54 -51.93 -0.34 0.52 16 43 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.39 8.04 7.40 -40.82 -0.30 7.74 16 45 H 0.27 7.42 8.29 -40.82 -0.34 7.08 16 46 H 0.03 0.33 6.65 -51.93 -0.35 -0.02 16 47 H 0.08 0.84 5.97 -51.93 -0.31 0.53 16 LS Contribution 349.73 15.07 5.27 5.27 Total: -1.00 -32.75 349.73 -8.23 -40.98 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -8.20 Total: 7.03 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -0.02 Total: -1.88 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: -0.34 Total: -47.70 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: 0.08 Total: -19.22 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.75 -8.23 -40.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153646132.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.256 kcal (2) G-P(sol) polarization free energy of solvation -32.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds