Wall clock time and date at job start Tue Mar 31 2020 06:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47235 * 2 1 4 4 C 1.50706 * 109.47304 * 120.00364 * 2 1 3 5 5 H 1.07998 * 120.00168 * 119.99387 * 4 2 1 6 6 C 1.37880 * 119.99248 * 299.99690 * 4 2 1 7 7 N 1.31509 * 120.00492 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99607 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47190 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47438 * 119.99892 * 8 6 4 11 11 H 1.48500 * 109.47416 * 240.00111 * 8 6 4 12 12 N 1.46898 * 109.46948 * 239.99685 * 2 1 3 13 13 C 1.46901 * 111.00443 * 306.04832 * 12 2 1 14 14 C 1.46906 * 110.99820 * 70.00145 * 12 2 1 15 15 C 1.50696 * 109.47351 * 169.99890 * 14 12 2 16 16 O 1.21285 * 119.99962 * 359.97438 * 15 14 12 17 17 N 1.34775 * 120.00393 * 180.02562 * 15 14 12 18 18 C 1.46922 * 120.62761 * 359.71818 * 17 15 14 19 19 C 1.53626 * 108.54171 * 126.36568 * 18 17 15 20 20 H 1.08990 * 109.63778 * 294.86786 * 19 18 17 21 21 C 1.53007 * 109.43240 * 174.72328 * 19 18 17 22 22 C 1.53043 * 109.23876 * 54.85974 * 19 18 17 23 23 C 1.53038 * 109.53758 * 298.50775 * 22 19 18 24 24 H 1.09000 * 109.49958 * 301.41578 * 23 22 19 25 25 C 1.52998 * 109.49659 * 181.31740 * 23 22 19 26 26 C 1.46921 * 120.63234 * 179.97438 * 17 15 14 27 27 H 1.08991 * 109.47344 * 60.00022 * 1 2 3 28 28 H 1.09002 * 109.47146 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46628 * 299.99980 * 1 2 3 30 30 H 0.97001 * 120.00000 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.47401 * 183.95136 * 13 12 2 32 32 H 1.09001 * 109.46874 * 63.95149 * 13 12 2 33 33 H 1.09004 * 109.46970 * 303.95282 * 13 12 2 34 34 H 1.08997 * 109.46995 * 289.99871 * 14 12 2 35 35 H 1.09001 * 109.46848 * 49.99877 * 14 12 2 36 36 H 1.08999 * 109.59365 * 246.20238 * 18 17 15 37 37 H 1.09002 * 109.58866 * 6.62919 * 18 17 15 38 38 H 1.09003 * 109.47166 * 300.29472 * 21 19 18 39 39 H 1.09000 * 109.46945 * 60.29328 * 21 19 18 40 40 H 1.08996 * 109.46732 * 180.29421 * 21 19 18 41 41 H 1.08996 * 109.46143 * 178.48503 * 22 19 18 42 42 H 1.09002 * 109.46140 * 58.52941 * 22 19 18 43 43 H 1.09003 * 109.47123 * 300.15928 * 25 23 22 44 44 H 1.09002 * 109.47581 * 60.16203 * 25 23 22 45 45 H 1.08996 * 109.47175 * 180.16457 * 25 23 22 46 46 H 1.09002 * 109.58692 * 353.37439 * 26 17 15 47 47 H 1.09004 * 109.58712 * 113.80012 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3226 -1.1195 4.0079 9 1 3.1485 -2.2857 3.6038 10 1 3.1474 -0.1858 4.8161 11 1 1.1679 -1.5866 4.8166 12 7 2.0196 -0.6926 -1.1994 13 6 1.4343 -2.0355 -1.3078 14 6 1.7529 0.0972 -2.4090 15 6 2.4773 -0.5163 -3.5794 16 8 3.1500 -1.5130 -3.4214 17 7 2.3785 0.0431 -4.8016 18 6 1.5633 1.2476 -5.0098 19 6 2.4356 2.3172 -5.6847 20 1 3.2352 2.6181 -5.0080 21 6 1.5736 3.5331 -6.0305 22 6 3.0410 1.7392 -6.9659 23 6 3.9296 0.5429 -6.6178 24 1 4.7153 0.8606 -5.9323 25 6 4.5603 -0.0137 -7.8957 26 6 3.0793 -0.5431 -5.9521 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 0.7089 1.1612 3.4844 31 1 1.8663 -2.5522 -2.1648 32 1 0.3555 -1.9520 -1.4399 33 1 1.6466 -2.5988 -0.3991 34 1 0.6814 0.1052 -2.6087 35 1 2.1025 1.1188 -2.2603 36 1 0.7138 1.0081 -5.6493 37 1 1.2067 1.6182 -4.0487 38 1 0.7733 3.2308 -6.7061 39 1 1.1426 3.9443 -5.1177 40 1 2.1908 4.2902 -6.5141 41 1 3.6390 2.5037 -7.4619 42 1 2.2410 1.4157 -7.6318 43 1 3.7739 -0.3299 -8.5811 44 1 5.1655 0.7595 -8.3689 45 1 5.1908 -0.8675 -7.6476 46 1 3.7233 -1.3546 -5.6130 47 1 2.3512 -0.9261 -6.6672 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161721864.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:36 Heat of formation + Delta-G solvation = -39.489520 kcal Electronic energy + Delta-G solvation = -23530.564443 eV Core-core repulsion = 20327.017934 eV Total energy + Delta-G solvation = -3203.546509 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.19929 -38.06542 -36.43704 -33.96285 -33.48124 -32.63035 -29.28324 -27.81626 -26.92345 -26.60457 -25.31582 -25.17844 -23.52470 -21.00490 -20.50829 -19.49162 -18.58478 -16.97441 -16.12930 -15.76554 -15.43734 -14.98143 -14.97237 -14.74978 -14.09252 -13.82395 -13.66275 -13.20746 -13.07974 -12.91150 -12.58598 -12.53288 -12.33848 -12.25275 -12.05218 -11.74871 -11.53142 -11.05290 -11.02988 -10.96747 -10.85885 -10.79030 -10.69557 -10.65258 -10.50187 -10.38786 -10.03462 -9.93740 -9.21214 -8.82441 -8.48946 -8.35693 -7.08785 -5.98322 -4.00677 3.00498 3.11203 3.33542 3.41226 3.47820 4.40050 4.45993 4.57323 4.60401 4.73745 4.93064 5.08140 5.18411 5.18746 5.29785 5.34324 5.35612 5.39580 5.47532 5.50157 5.59309 5.64502 5.70855 5.82372 5.84182 5.87592 5.89126 5.96745 6.00183 6.07105 6.25048 6.38675 6.46792 6.64524 6.71258 6.83556 7.02042 7.11547 7.41933 7.58954 7.72693 7.89146 8.14032 8.40295 8.54804 8.65196 9.06387 9.64178 11.09159 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026761 B = 0.003816 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.065009 B = 7335.407373 C = 7867.466201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.210 3.790 3 H 0.038 0.962 4 C -0.494 4.494 5 H 0.064 0.936 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.517 5.517 13 C 0.031 3.969 14 C 0.039 3.961 15 C 0.518 3.482 16 O -0.519 6.519 17 N -0.623 5.623 18 C 0.113 3.887 19 C -0.109 4.109 20 H 0.077 0.923 21 C -0.145 4.145 22 C -0.107 4.107 23 C -0.108 4.108 24 H 0.074 0.926 25 C -0.144 4.144 26 C 0.118 3.882 27 H 0.004 0.996 28 H 0.032 0.968 29 H 0.089 0.911 30 H 0.259 0.741 31 H 0.061 0.939 32 H 0.010 0.990 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.091 0.909 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.580 3.962 -20.657 21.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.104 3.896 3 H 0.056 0.944 4 C -0.533 4.533 5 H 0.083 0.917 6 C -0.144 4.144 7 N -0.537 5.537 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.241 5.241 13 C -0.117 4.117 14 C -0.092 4.092 15 C 0.306 3.694 16 O -0.394 6.394 17 N -0.358 5.358 18 C -0.011 4.011 19 C -0.129 4.129 20 H 0.095 0.905 21 C -0.203 4.203 22 C -0.145 4.145 23 C -0.128 4.128 24 H 0.093 0.907 25 C -0.202 4.202 26 C -0.005 4.005 27 H 0.023 0.977 28 H 0.052 0.948 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.028 0.972 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.109 0.891 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.386 3.446 -20.336 20.673 hybrid contribution -0.720 -0.103 0.739 1.037 sum 0.666 3.344 -19.597 19.891 Atomic orbital electron populations 1.22421 1.00788 0.99563 1.00393 1.19380 0.89762 0.94456 0.85990 0.94392 1.21152 1.30212 1.12450 0.89440 0.91741 1.24917 0.95283 0.95180 0.98985 1.69888 1.37342 1.23212 1.23241 0.86453 0.78519 0.79738 0.82802 1.19669 1.21092 1.21215 1.62094 1.59088 1.02335 1.00572 1.22356 0.95251 0.91564 1.02509 1.21949 0.97540 0.98867 0.90866 1.21055 0.81140 0.84002 0.83177 1.90628 1.40024 1.25158 1.83561 1.48187 1.50257 1.28949 1.08443 1.21874 0.92966 0.84571 1.01659 1.21610 0.98592 0.95122 0.97528 0.90468 1.21772 0.99666 0.97078 1.01812 1.21641 0.98892 0.97072 0.96874 1.21510 0.98001 0.95818 0.97425 0.90708 1.21751 1.00579 1.01071 0.96755 1.21543 0.95553 0.96126 0.87275 0.97655 0.94847 0.89213 0.93128 0.92050 0.97203 0.90929 0.93057 0.88842 0.91606 0.89395 0.92566 0.92146 0.92415 0.91801 0.91877 0.92620 0.92474 0.92373 0.89096 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 8.22 37.16 0.31 -3.83 16 2 C 0.21 5.35 2.31 -68.86 -0.16 5.19 16 3 H 0.04 1.04 7.93 -51.93 -0.41 0.63 16 4 C -0.49 -13.84 7.91 -34.44 -0.27 -14.11 16 5 H 0.06 1.85 7.12 -52.49 -0.37 1.48 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -25.54 11.32 55.43 0.63 -24.91 16 8 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 N -0.52 -11.82 4.44 -237.72 -1.06 -12.88 16 13 C 0.03 0.69 8.34 60.07 0.50 1.19 16 14 C 0.04 0.73 3.36 -4.97 -0.02 0.71 16 15 C 0.52 9.17 7.42 -10.99 -0.08 9.09 16 16 O -0.52 -11.03 13.72 5.55 0.08 -10.96 16 17 N -0.62 -8.43 2.97 -172.53 -0.51 -8.94 16 18 C 0.11 1.19 5.65 -3.49 -0.02 1.17 16 19 C -0.11 -0.98 2.89 -90.27 -0.26 -1.24 16 20 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 21 C -0.15 -1.07 9.20 37.16 0.34 -0.72 16 22 C -0.11 -0.88 4.45 -26.69 -0.12 -1.00 16 23 C -0.11 -1.03 2.87 -90.52 -0.26 -1.29 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 25 C -0.14 -1.11 9.20 37.16 0.34 -0.76 16 26 C 0.12 1.39 5.71 -3.73 -0.02 1.37 16 27 H 0.00 0.10 6.91 -51.93 -0.36 -0.26 16 28 H 0.03 0.79 6.42 -51.93 -0.33 0.45 16 29 H 0.09 2.37 6.07 -51.92 -0.32 2.06 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.06 1.31 5.88 -51.93 -0.31 1.01 16 32 H 0.01 0.20 6.46 -51.93 -0.34 -0.13 16 33 H 0.07 1.68 6.76 -51.93 -0.35 1.33 16 34 H 0.05 0.89 6.85 -51.93 -0.36 0.54 16 35 H 0.09 1.64 7.49 -51.93 -0.39 1.25 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.95 5.93 -51.93 -0.31 0.64 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.09 1.25 7.01 -51.93 -0.36 0.89 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 352.98 15.07 5.32 5.32 Total: -1.00 -30.95 352.98 -8.79 -39.74 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -8.41 Total: -1.32 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 0.19 Total: -2.76 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: -0.94 Total: -46.73 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.08 Total: -10.96 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.95 -8.79 -39.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161721864.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.250 kcal (2) G-P(sol) polarization free energy of solvation -30.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds