Wall clock time and date at job start Tue Mar 31 2020 06:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46637 * 2 1 4 4 C 1.50698 * 109.47244 * 120.00271 * 2 1 3 5 5 H 1.07996 * 120.00073 * 114.53986 * 4 2 1 6 6 C 1.37880 * 119.99575 * 294.54546 * 4 2 1 7 7 N 1.31517 * 119.99576 * 160.90435 * 6 4 2 8 8 Si 1.86794 * 120.00438 * 340.90314 * 6 4 2 9 9 H 1.48498 * 109.47327 * 180.02562 * 8 6 4 10 10 H 1.48507 * 109.47154 * 300.00314 * 8 6 4 11 11 H 1.48499 * 109.47101 * 59.99964 * 8 6 4 12 12 N 1.46904 * 109.47045 * 240.00403 * 2 1 3 13 13 C 1.46897 * 110.99747 * 306.04501 * 12 2 1 14 14 C 1.46899 * 110.99778 * 70.00025 * 12 2 1 15 15 C 1.50701 * 109.46535 * 170.00027 * 14 12 2 16 16 O 1.21281 * 120.00354 * 359.97438 * 15 14 12 17 17 N 1.34784 * 119.99888 * 180.02562 * 15 14 12 18 18 C 1.46925 * 120.62949 * 359.71472 * 17 15 14 19 19 C 1.53620 * 108.54482 * 126.37289 * 18 17 15 20 20 H 1.09005 * 109.63125 * 294.86571 * 19 18 17 21 21 C 1.52999 * 109.43277 * 174.72590 * 19 18 17 22 22 C 1.53037 * 109.24253 * 54.85484 * 19 18 17 23 23 C 1.53038 * 109.53830 * 298.51317 * 22 19 18 24 24 H 1.09000 * 109.50063 * 181.31753 * 23 22 19 25 25 C 1.52998 * 109.52715 * 301.39799 * 23 22 19 26 26 C 1.46925 * 120.63211 * 179.97438 * 17 15 14 27 27 H 1.08994 * 109.47265 * 305.12325 * 1 2 3 28 28 H 1.09002 * 109.47128 * 65.13076 * 1 2 3 29 29 H 1.09001 * 109.47164 * 185.12352 * 1 2 3 30 30 H 0.97001 * 120.00025 * 2.24219 * 7 6 4 31 31 H 1.08994 * 109.47812 * 60.00411 * 13 12 2 32 32 H 1.09008 * 109.46806 * 180.02562 * 13 12 2 33 33 H 1.08997 * 109.47187 * 299.99800 * 13 12 2 34 34 H 1.08996 * 109.47130 * 289.99714 * 14 12 2 35 35 H 1.08999 * 109.47322 * 49.99911 * 14 12 2 36 36 H 1.09000 * 109.58776 * 246.20900 * 18 17 15 37 37 H 1.09008 * 109.58733 * 6.62933 * 18 17 15 38 38 H 1.08998 * 109.47369 * 300.28774 * 21 19 18 39 39 H 1.09002 * 109.47568 * 60.28821 * 21 19 18 40 40 H 1.09005 * 109.47266 * 180.28549 * 21 19 18 41 41 H 1.08997 * 109.45803 * 178.49235 * 22 19 18 42 42 H 1.09003 * 109.45891 * 58.53336 * 22 19 18 43 43 H 1.09002 * 109.47581 * 179.85491 * 25 23 22 44 44 H 1.09000 * 109.47022 * 299.85606 * 25 23 22 45 45 H 1.09001 * 109.47216 * 59.85092 * 25 23 22 46 46 H 1.08997 * 109.58688 * 353.36650 * 26 17 15 47 47 H 1.08999 * 109.58589 * 113.79284 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5786 -1.6371 1.1337 6 6 1.7945 -0.1774 2.4796 7 7 1.8830 -0.9399 3.5475 8 14 1.3466 1.6275 2.6551 9 1 1.1434 1.9498 4.0904 10 1 2.4452 2.4654 2.1109 11 1 0.0956 1.9024 1.9037 12 7 2.0197 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3079 14 6 1.7529 0.0974 -2.4090 15 6 2.4774 -0.5161 -3.5794 16 8 3.1501 -1.5128 -3.4214 17 7 2.3786 0.0435 -4.8016 18 6 1.5634 1.2480 -5.0098 19 6 2.4355 2.3175 -5.6847 20 1 3.2352 2.6185 -5.0079 21 6 1.5735 3.5334 -6.0304 22 6 3.0410 1.7397 -6.9659 23 6 3.9297 0.5435 -6.6177 24 1 4.3792 0.1469 -7.5282 25 6 5.0330 0.9888 -5.6558 26 6 3.0795 -0.5427 -5.9522 27 1 -0.3633 0.5912 0.8405 28 1 -0.3633 0.4322 -0.9324 29 1 -0.3633 -1.0236 0.0918 30 1 2.1473 -1.8691 3.4595 31 1 0.3491 -1.9549 -1.3695 32 1 1.8140 -2.5259 -2.2042 33 1 1.7059 -2.6220 -0.4304 34 1 0.6814 0.1055 -2.6087 35 1 2.1025 1.1191 -2.2603 36 1 0.7139 1.0083 -5.6493 37 1 1.2068 1.6185 -4.0486 38 1 0.7732 3.2312 -6.7060 39 1 1.1424 3.9446 -5.1176 40 1 2.1906 4.2907 -6.5140 41 1 3.6391 2.5043 -7.4618 42 1 2.2410 1.4162 -7.6318 43 1 5.6639 0.1356 -5.4064 44 1 5.6380 1.7618 -6.1297 45 1 4.5831 1.3863 -4.7460 46 1 3.7235 -1.3541 -5.6131 47 1 2.3514 -0.9257 -6.6672 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161722083.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:39 Heat of formation + Delta-G solvation = -33.989456 kcal Electronic energy + Delta-G solvation = -23889.915342 eV Core-core repulsion = 20686.607333 eV Total energy + Delta-G solvation = -3203.308009 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.41174 -38.24935 -36.62436 -33.67301 -33.50980 -32.59351 -29.83557 -28.07113 -26.91693 -26.83380 -25.40816 -24.98383 -23.52275 -21.71471 -20.06550 -19.07799 -18.51550 -17.35618 -16.91856 -15.88288 -15.55505 -15.14055 -14.91093 -14.43539 -14.27001 -14.01916 -13.81317 -13.57054 -13.25731 -12.94094 -12.77963 -12.47081 -12.34561 -12.19029 -11.91833 -11.75806 -11.68047 -11.41786 -11.34064 -11.21570 -11.03585 -10.87808 -10.74251 -10.66820 -10.46101 -10.34922 -9.84260 -9.73352 -9.30246 -8.89517 -8.54214 -8.12341 -7.27265 -6.41391 -3.97047 2.92098 3.03587 3.36722 3.44473 3.61038 4.36927 4.49767 4.52150 4.54927 4.73715 4.82079 4.96527 5.02877 5.15048 5.20103 5.29603 5.31063 5.43945 5.44947 5.52190 5.53620 5.64529 5.67538 5.69738 5.75306 5.79684 5.84205 5.93295 6.01117 6.05967 6.18819 6.26683 6.30498 6.37881 6.40231 6.59185 6.65288 6.83913 7.00655 7.27117 7.46899 7.75921 8.07713 8.32684 8.49034 8.53288 9.05883 9.69248 10.99785 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022874 B = 0.004451 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.813042 B = 6289.735178 C = 6820.172290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.187 3.813 3 H 0.029 0.971 4 C -0.584 4.584 5 H 0.065 0.935 6 C 0.030 3.970 7 N -0.907 5.907 8 Si 1.043 2.957 9 H -0.286 1.286 10 H -0.283 1.283 11 H -0.276 1.276 12 N -0.507 5.507 13 C 0.033 3.967 14 C 0.034 3.966 15 C 0.518 3.482 16 O -0.517 6.517 17 N -0.619 5.619 18 C 0.113 3.887 19 C -0.111 4.111 20 H 0.081 0.919 21 C -0.146 4.146 22 C -0.108 4.108 23 C -0.106 4.106 24 H 0.078 0.922 25 C -0.146 4.146 26 C 0.117 3.883 27 H 0.058 0.942 28 H 0.019 0.981 29 H 0.051 0.949 30 H 0.268 0.732 31 H 0.011 0.989 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.060 0.940 46 H 0.092 0.908 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.241 8.136 -22.901 24.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.080 3.920 3 H 0.047 0.953 4 C -0.622 4.622 5 H 0.083 0.917 6 C -0.175 4.175 7 N -0.541 5.541 8 Si 0.872 3.128 9 H -0.212 1.212 10 H -0.210 1.210 11 H -0.203 1.203 12 N -0.230 5.230 13 C -0.115 4.115 14 C -0.098 4.098 15 C 0.306 3.694 16 O -0.391 6.391 17 N -0.355 5.355 18 C -0.011 4.011 19 C -0.131 4.131 20 H 0.099 0.901 21 C -0.204 4.204 22 C -0.145 4.145 23 C -0.126 4.126 24 H 0.096 0.904 25 C -0.203 4.203 26 C -0.006 4.006 27 H 0.077 0.923 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.030 0.970 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.110 0.890 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.756 8.665 -21.601 23.286 hybrid contribution -0.539 -0.948 -1.293 1.692 sum -1.295 7.717 -22.894 24.194 Atomic orbital electron populations 1.22889 1.01358 1.01335 0.98996 1.19696 0.89144 0.94520 0.88643 0.95295 1.21906 1.39607 1.10617 0.90062 0.91733 1.25664 0.94645 1.05148 0.92070 1.70858 1.43222 1.08504 1.31505 0.84089 0.76845 0.75862 0.76014 1.21155 1.20970 1.20309 1.62012 1.58822 1.02276 0.99928 1.22354 0.95286 0.91220 1.02632 1.22027 0.97672 0.98914 0.91143 1.20926 0.81220 0.84071 0.83143 1.90645 1.39863 1.25074 1.83503 1.48135 1.50164 1.28854 1.08387 1.21870 0.93018 0.84636 1.01541 1.21657 0.98595 0.95072 0.97738 0.90077 1.21778 0.99689 0.97151 1.01744 1.21598 0.98834 0.97257 0.96830 1.21485 0.96206 0.96007 0.98857 0.90373 1.21826 0.97733 1.01195 0.99529 1.21541 0.95558 0.96138 0.87383 0.92307 0.96174 0.92952 0.92224 0.97021 0.91899 0.90868 0.92999 0.88834 0.91570 0.89577 0.92584 0.92257 0.92397 0.91772 0.91907 0.92608 0.92974 0.92109 0.89007 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.08 8.03 37.16 0.30 -3.78 16 2 C 0.19 4.51 1.89 -68.86 -0.13 4.38 16 3 H 0.03 0.70 6.57 -51.93 -0.34 0.36 16 4 C -0.58 -16.64 8.32 -34.44 -0.29 -16.93 16 5 H 0.06 2.03 7.15 -52.49 -0.38 1.66 16 6 C 0.03 0.86 5.33 -17.82 -0.09 0.76 16 7 N -0.91 -28.02 13.70 55.43 0.76 -27.27 16 8 Si 1.04 25.02 26.47 -169.99 -4.50 20.52 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.04 5.56 56.52 0.31 -5.73 16 12 N -0.51 -11.30 4.44 -237.73 -1.06 -12.36 16 13 C 0.03 0.72 8.46 60.06 0.51 1.23 16 14 C 0.03 0.60 3.37 -4.98 -0.02 0.58 16 15 C 0.52 8.77 7.39 -10.98 -0.08 8.69 16 16 O -0.52 -10.70 13.75 5.56 0.08 -10.63 16 17 N -0.62 -7.86 2.41 -172.53 -0.42 -8.27 16 18 C 0.11 1.09 5.65 -3.49 -0.02 1.07 16 19 C -0.11 -0.92 2.54 -90.28 -0.23 -1.15 16 20 H 0.08 0.77 6.34 -51.93 -0.33 0.44 16 21 C -0.15 -0.97 9.20 37.16 0.34 -0.63 16 22 C -0.11 -0.82 4.71 -26.69 -0.13 -0.95 16 23 C -0.11 -0.95 3.21 -90.52 -0.29 -1.24 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 25 C -0.15 -1.51 8.71 37.16 0.32 -1.19 16 26 C 0.12 1.30 5.82 -3.73 -0.02 1.28 16 27 H 0.06 1.31 4.92 -51.93 -0.26 1.06 16 28 H 0.02 0.37 6.70 -51.93 -0.35 0.02 16 29 H 0.05 1.17 6.64 -51.93 -0.34 0.83 16 30 H 0.27 8.30 8.72 -40.82 -0.36 7.95 16 31 H 0.01 0.23 6.33 -51.93 -0.33 -0.10 16 32 H 0.06 1.33 5.83 -51.92 -0.30 1.03 16 33 H 0.07 1.74 6.75 -51.93 -0.35 1.39 16 34 H 0.05 0.83 6.74 -51.93 -0.35 0.48 16 35 H 0.09 1.51 7.49 -51.93 -0.39 1.12 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.84 5.93 -51.92 -0.31 0.53 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.73 5.97 -51.93 -0.31 0.42 16 46 H 0.09 1.22 7.01 -51.93 -0.36 0.86 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 343.66 15.07 5.18 5.18 Total: -1.00 -32.46 343.66 -7.94 -40.40 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -8.16 Total: 0.29 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 0.17 Total: -7.87 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -0.71 Total: -47.89 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.63 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -4.50 Total: 20.52 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.46 -7.94 -40.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161722083.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.412 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds