Wall clock time and date at job start Tue Mar 31 2020 06:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47380 * 2 1 4 4 C 1.52995 * 109.47053 * 239.99341 * 2 1 3 5 5 C 1.53001 * 109.47263 * 300.00104 * 4 2 1 6 6 C 1.52994 * 109.47206 * 300.00225 * 5 4 2 7 7 C 1.53001 * 109.47517 * 60.00103 * 6 5 4 8 8 C 1.53001 * 109.46798 * 300.00146 * 7 6 5 9 9 H 1.09002 * 109.47204 * 299.99824 * 8 7 6 10 10 C 1.52995 * 109.47263 * 179.97438 * 8 7 6 11 11 N 1.46500 * 109.47191 * 64.99573 * 10 8 7 12 12 C 1.34778 * 119.99806 * 180.02562 * 11 10 8 13 13 O 1.21581 * 120.00499 * 0.02562 * 12 11 10 14 14 N 1.34783 * 119.99586 * 180.02562 * 12 11 10 15 15 C 1.46505 * 119.99652 * 180.02562 * 14 12 11 16 16 C 1.52994 * 109.46881 * 179.97438 * 15 14 12 17 17 C 1.52996 * 109.47119 * 180.02562 * 16 15 14 18 18 C 1.50702 * 109.47159 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72211 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48504 * 109.47196 * 60.00645 * 22 20 18 24 24 H 1.48504 * 109.46887 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47679 * 300.00280 * 22 20 18 26 26 H 1.08998 * 109.47052 * 300.00901 * 1 2 3 27 27 H 1.09006 * 109.46782 * 60.00547 * 1 2 3 28 28 H 1.09002 * 109.47239 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46574 * 180.02562 * 4 2 1 30 30 H 1.08997 * 109.47066 * 60.00425 * 4 2 1 31 31 H 1.08998 * 109.46986 * 180.02562 * 5 4 2 32 32 H 1.08995 * 109.46874 * 60.00091 * 5 4 2 33 33 H 1.08997 * 109.47581 * 299.99903 * 6 5 4 34 34 H 1.09002 * 109.47201 * 179.97438 * 6 5 4 35 35 H 1.08997 * 109.47390 * 179.97438 * 7 6 5 36 36 H 1.08997 * 109.46858 * 59.99357 * 7 6 5 37 37 H 1.09004 * 109.47360 * 304.99822 * 10 8 7 38 38 H 1.08998 * 109.47306 * 184.99929 * 10 8 7 39 39 H 0.96995 * 120.00227 * 0.02562 * 11 10 8 40 40 H 0.96993 * 119.99868 * 0.02562 * 14 12 11 41 41 H 1.08998 * 109.46922 * 60.00542 * 15 14 12 42 42 H 1.08994 * 109.47094 * 300.00180 * 15 14 12 43 43 H 1.09004 * 109.46806 * 60.00265 * 16 15 14 44 44 H 1.09000 * 109.47828 * 300.00569 * 16 15 14 45 45 H 1.09004 * 109.47066 * 60.00422 * 17 16 15 46 46 H 1.08994 * 109.47405 * 300.00252 * 17 16 15 47 47 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.5300 -2.1639 -1.2490 6 6 2.0399 -2.8850 0.0003 7 6 1.5299 -2.1637 1.2495 8 6 2.0399 -0.7212 1.2494 9 1 3.1299 -0.7212 1.2494 10 6 1.5294 0.0004 2.4982 11 7 2.1130 -0.6170 3.6917 12 6 1.8035 -0.1435 4.9151 13 8 1.0397 0.7956 5.0282 14 7 2.3409 -0.7112 6.0131 15 6 2.0041 -0.1969 7.3429 16 6 2.7417 -1.0121 8.4068 17 6 2.3896 -0.4755 9.7956 18 6 3.1167 -1.2781 10.8436 19 1 3.7655 -2.0895 10.5486 20 6 2.9585 -0.9725 12.1788 21 7 2.1688 0.0159 12.5380 22 14 3.8658 -1.9624 13.4773 23 1 5.3295 -1.8478 13.2541 24 1 3.5277 -1.4384 14.8250 25 1 3.4611 -3.3883 13.3853 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 -0.7217 -1.2488 30 1 1.6767 -0.2076 -2.1391 31 1 1.8937 -2.6779 -2.1387 32 1 0.4400 -2.1638 -1.2490 33 1 3.1299 -2.8851 0.0004 34 1 1.6762 -3.9125 0.0006 35 1 1.8928 -2.6777 2.1395 36 1 0.4399 -2.1636 1.2494 37 1 0.4430 -0.0765 2.5437 38 1 1.8178 1.0506 2.4544 39 1 2.7220 -1.3665 3.6016 40 1 2.9505 -1.4602 5.9228 41 1 0.9291 -0.2797 7.5029 42 1 2.3025 0.8490 7.4143 43 1 3.8168 -0.9297 8.2470 44 1 2.4429 -2.0579 8.3353 45 1 1.3144 -0.5582 9.9552 46 1 2.6881 0.5703 9.8675 47 1 2.0572 0.2307 13.4774 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170885894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:47 Heat of formation + Delta-G solvation = -78.998998 kcal Electronic energy + Delta-G solvation = -21952.550501 eV Core-core repulsion = 18747.290732 eV Total energy + Delta-G solvation = -3205.259769 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.25477 -39.26552 -35.60932 -34.67957 -33.28002 -32.46718 -31.55692 -30.68919 -27.60666 -26.65507 -25.35154 -23.07336 -22.56126 -21.55631 -20.78785 -20.34278 -18.87473 -17.90909 -16.59606 -16.06605 -16.05614 -15.62498 -15.03594 -14.67428 -14.50358 -14.43331 -14.09305 -13.87094 -13.76915 -13.22692 -13.01138 -12.88177 -12.26329 -12.21934 -11.88936 -11.84796 -11.78370 -11.62691 -11.41807 -11.17159 -10.86765 -10.69339 -10.60668 -10.56764 -10.41987 -10.30005 -10.04417 -9.82943 -9.41356 -9.11988 -9.11632 -8.53668 -8.35206 -5.99961 -4.03041 2.89041 3.33034 3.37739 3.39686 3.43884 4.23949 4.29621 4.30338 4.44148 4.50573 4.76806 4.82970 4.92663 4.98791 4.99778 5.09834 5.23973 5.32239 5.35555 5.41941 5.49596 5.59166 5.63813 5.64258 5.74476 5.75693 5.76972 5.84915 5.87071 5.91426 5.96394 6.02212 6.20993 6.22010 6.52400 6.57503 6.65677 6.85110 7.05544 7.13043 7.65751 7.79156 7.99029 8.21187 8.39970 8.81855 9.03444 9.60796 11.11286 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042241 B = 0.002242 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.701588 B =12487.199677 C =12939.599486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.083 4.083 3 H 0.072 0.928 4 C -0.113 4.113 5 C -0.122 4.122 6 C -0.119 4.119 7 C -0.117 4.117 8 C -0.093 4.093 9 H 0.076 0.924 10 C 0.143 3.857 11 N -0.751 5.751 12 C 0.699 3.301 13 O -0.594 6.594 14 N -0.743 5.743 15 C 0.135 3.865 16 C -0.120 4.120 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.055 0.945 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.393 0.607 40 H 0.393 0.607 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.129 -4.479 -29.524 29.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.102 4.102 3 H 0.091 0.909 4 C -0.151 4.151 5 C -0.160 4.160 6 C -0.157 4.157 7 C -0.155 4.155 8 C -0.112 4.112 9 H 0.094 0.906 10 C 0.018 3.982 11 N -0.408 5.408 12 C 0.398 3.602 13 O -0.473 6.473 14 N -0.397 5.397 15 C 0.012 3.988 16 C -0.158 4.158 17 C -0.014 4.014 18 C -0.561 4.561 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.722 3.278 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.227 0.773 40 H 0.226 0.774 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.671 -3.481 -29.232 29.447 hybrid contribution 1.089 -1.205 0.737 1.783 sum 0.418 -4.686 -28.495 28.881 Atomic orbital electron populations 1.22030 0.95071 1.02285 1.01958 1.21035 0.96231 0.99139 0.93764 0.90924 1.21551 1.00518 0.95653 0.97350 1.21581 1.01115 0.95607 0.97684 1.21527 1.00716 0.98831 0.94585 1.21644 1.01426 0.94634 0.97770 1.21412 1.00667 0.95329 0.93816 0.90585 1.21258 0.98216 0.96593 0.82107 1.45148 1.52441 1.38385 1.04802 1.16035 0.81093 0.82581 0.80447 1.90913 1.40019 1.30434 1.85888 1.45388 1.50875 1.37561 1.05882 1.21495 1.00103 0.98362 0.78850 1.21885 0.98894 0.98681 0.96347 1.19025 0.97209 0.96601 0.88541 1.21171 1.27485 1.16262 0.91168 0.92722 1.25037 0.95435 0.95274 0.98773 1.69960 1.37499 1.28951 1.16846 0.86637 0.80161 0.80336 0.80712 1.20264 1.21285 1.20264 0.92132 0.92793 0.91959 0.92018 0.91944 0.92302 0.91631 0.92065 0.92068 0.91935 0.91316 0.91477 0.91874 0.77338 0.77406 0.92014 0.92009 0.92805 0.92800 0.96246 0.96247 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 8.15 37.16 0.30 -0.74 16 2 C -0.08 -0.53 2.72 -90.62 -0.25 -0.78 16 3 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.11 -0.64 5.45 -26.73 -0.15 -0.78 16 5 C -0.12 -0.68 5.65 -26.73 -0.15 -0.83 16 6 C -0.12 -0.69 5.92 -26.73 -0.16 -0.85 16 7 C -0.12 -0.78 4.80 -26.73 -0.13 -0.90 16 8 C -0.09 -0.65 2.00 -90.62 -0.18 -0.83 16 9 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 10 C 0.14 1.42 4.56 -4.04 -0.02 1.41 16 11 N -0.75 -8.33 5.29 -65.23 -0.34 -8.67 16 12 C 0.70 11.02 8.57 -86.91 -0.74 10.28 16 13 O -0.59 -12.06 16.34 5.29 0.09 -11.97 16 14 N -0.74 -11.09 5.56 -65.23 -0.36 -11.46 16 15 C 0.14 2.47 5.67 -4.04 -0.02 2.45 16 16 C -0.12 -2.38 5.27 -26.74 -0.14 -2.52 16 17 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 18 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 19 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 22 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 26 H 0.06 0.46 6.54 -51.93 -0.34 0.12 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.41 4.81 -51.93 -0.25 0.16 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.37 6.43 -51.93 -0.33 0.04 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.42 7.18 -51.93 -0.37 0.05 16 36 H 0.07 0.50 6.43 -51.93 -0.33 0.17 16 37 H 0.07 0.75 6.71 -51.93 -0.35 0.40 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.39 3.25 7.67 -40.82 -0.31 2.94 16 40 H 0.39 4.66 8.49 -40.82 -0.35 4.31 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 362.07 15.07 5.46 5.46 Total: -1.00 -32.87 362.07 -10.15 -43.02 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -8.52 Total: 0.44 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -2.19 Total: -7.13 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.03 Total: -46.40 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.87 -10.15 -43.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170885894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.974 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds