Wall clock time and date at job start Tue Mar 31 2020 06:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46870 * 2 1 4 4 C 1.53002 * 109.47346 * 119.99817 * 2 1 3 5 5 C 1.52996 * 109.46972 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47165 * 300.00293 * 5 4 2 7 7 C 1.52999 * 109.47592 * 60.00300 * 6 5 4 8 8 C 1.52997 * 109.46975 * 240.00222 * 2 1 3 9 9 H 1.09000 * 109.47140 * 299.99612 * 8 2 1 10 10 C 1.52999 * 109.47269 * 60.00159 * 8 2 1 11 11 N 1.46500 * 109.47177 * 185.00061 * 10 8 2 12 12 C 1.34778 * 120.00010 * 179.97438 * 11 10 8 13 13 O 1.21583 * 120.00292 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99887 * 179.97438 * 12 11 10 15 15 C 1.46498 * 120.00167 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47510 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47191 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.47140 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99687 * 0.02562 * 18 17 16 20 20 C 1.37868 * 119.99956 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00434 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99945 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46834 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47251 * 119.99602 * 22 20 18 25 25 H 1.48504 * 109.47214 * 239.99673 * 22 20 18 26 26 H 1.09004 * 109.47368 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47108 * 299.99894 * 1 2 3 28 28 H 1.09001 * 109.47367 * 59.99592 * 1 2 3 29 29 H 1.08992 * 109.46974 * 300.00318 * 4 2 1 30 30 H 1.08996 * 109.46550 * 60.00424 * 4 2 1 31 31 H 1.09000 * 109.47054 * 60.00300 * 5 4 2 32 32 H 1.09001 * 109.46997 * 180.02562 * 5 4 2 33 33 H 1.09000 * 109.47140 * 299.99954 * 6 5 4 34 34 H 1.09002 * 109.47045 * 180.02562 * 6 5 4 35 35 H 1.08993 * 109.47839 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.47160 * 59.99666 * 7 6 5 37 37 H 1.09000 * 109.46738 * 304.99766 * 10 8 2 38 38 H 1.08994 * 109.47465 * 64.99853 * 10 8 2 39 39 H 0.97003 * 120.00376 * 359.97438 * 11 10 8 40 40 H 0.97003 * 120.00499 * 359.97438 * 14 12 11 41 41 H 1.09004 * 109.47150 * 300.00283 * 15 14 12 42 42 H 1.09003 * 109.46910 * 59.99592 * 15 14 12 43 43 H 1.08994 * 109.46704 * 300.00172 * 16 15 14 44 44 H 1.09000 * 109.46683 * 60.00290 * 16 15 14 45 45 H 1.09004 * 109.47333 * 300.00271 * 17 16 15 46 46 H 1.09007 * 109.46826 * 60.00232 * 17 16 15 47 47 H 0.97007 * 120.00523 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7217 1.2489 6 6 4.0794 -1.4433 -0.0004 7 6 3.5695 -0.7221 -1.2497 8 6 2.0399 -0.7212 -1.2493 9 1 1.6766 -1.7489 -1.2493 10 6 1.5300 0.0001 -2.4985 11 7 1.9175 -0.7565 -3.6916 12 6 1.5735 -0.3080 -4.9152 13 8 0.9411 0.7242 -5.0287 14 7 1.9305 -1.0038 -6.0128 15 6 1.5561 -0.5167 -7.3428 16 6 2.0803 -1.4836 -8.4064 17 6 1.6887 -0.9751 -9.7953 18 6 2.2045 -1.9278 -10.8428 19 1 2.7560 -2.8081 -10.5475 20 6 1.9723 -1.6755 -12.1782 21 7 1.3003 -0.6038 -12.5379 22 14 2.6111 -2.8568 -13.4767 23 1 3.3295 -3.9765 -12.8168 24 1 1.4704 -3.3941 -14.2612 25 1 3.5416 -2.1388 -14.3844 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.6767 -0.2074 2.1392 30 1 1.6767 -1.7488 1.2492 31 1 3.9337 0.3058 1.2486 32 1 3.9334 -1.2359 2.1386 33 1 3.7158 -2.4708 -0.0002 34 1 5.1694 -1.4440 -0.0004 35 1 3.9320 -1.2363 -2.1396 36 1 3.9331 0.3055 -1.2499 37 1 0.4436 0.0783 -2.4548 38 1 1.9645 0.9986 -2.5444 39 1 2.4217 -1.5802 -3.6011 40 1 2.4353 -1.8272 -5.9224 41 1 0.4703 -0.4518 -7.4136 42 1 1.9902 0.4702 -7.5037 43 1 3.1660 -1.5479 -8.3353 44 1 1.6465 -2.4705 -8.2456 45 1 0.6029 -0.9110 -9.8660 46 1 2.1222 0.0120 -9.9563 47 1 1.1366 -0.4265 -13.4775 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170885896.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:50 Heat of formation + Delta-G solvation = -82.794261 kcal Electronic energy + Delta-G solvation = -21871.250359 eV Core-core repulsion = 18665.826015 eV Total energy + Delta-G solvation = -3205.424344 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.12887 -39.11702 -35.59458 -34.66646 -33.30906 -33.04027 -31.57892 -30.68359 -27.37975 -26.52978 -25.33993 -23.06910 -22.03331 -21.29482 -20.79296 -20.41735 -19.97780 -17.98566 -16.57109 -15.99855 -15.67888 -15.39510 -14.98087 -14.73875 -14.55761 -14.44363 -14.27912 -13.90778 -13.80686 -13.38273 -12.92876 -12.43432 -12.27561 -12.22818 -12.10030 -11.86661 -11.77618 -11.65742 -11.33942 -11.23493 -10.90867 -10.79361 -10.70072 -10.55366 -10.41830 -10.31515 -10.04512 -9.83769 -9.42069 -9.11462 -9.09308 -8.53534 -8.36124 -6.00464 -4.03444 2.88953 3.30705 3.38130 3.41690 3.43848 4.22732 4.27632 4.32134 4.43872 4.50262 4.69728 4.77922 4.92393 5.02962 5.08666 5.10834 5.17045 5.32653 5.35298 5.42397 5.49110 5.57907 5.63200 5.64944 5.71638 5.75180 5.80798 5.84357 5.85333 5.88305 5.95557 6.03619 6.16007 6.21956 6.52420 6.57434 6.65579 6.85022 7.05442 7.12985 7.65990 7.78881 7.98749 8.21124 8.39751 8.81817 9.03553 9.60655 11.10848 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038892 B = 0.002251 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.773958 B =12433.272982 C =12920.080641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.083 4.083 3 H 0.073 0.927 4 C -0.113 4.113 5 C -0.121 4.121 6 C -0.120 4.120 7 C -0.116 4.116 8 C -0.093 4.093 9 H 0.076 0.924 10 C 0.141 3.859 11 N -0.751 5.751 12 C 0.699 3.301 13 O -0.594 6.594 14 N -0.743 5.743 15 C 0.135 3.865 16 C -0.120 4.120 17 C 0.023 3.977 18 C -0.521 4.521 19 H 0.056 0.944 20 C 0.056 3.944 21 N -0.893 5.893 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.393 0.607 40 H 0.393 0.607 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.543 -2.069 29.557 29.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.102 4.102 3 H 0.091 0.909 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.157 4.157 7 C -0.153 4.153 8 C -0.112 4.112 9 H 0.095 0.905 10 C 0.017 3.983 11 N -0.408 5.408 12 C 0.398 3.602 13 O -0.473 6.473 14 N -0.397 5.397 15 C 0.012 3.988 16 C -0.158 4.158 17 C -0.015 4.015 18 C -0.559 4.559 19 H 0.074 0.926 20 C -0.146 4.146 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.227 0.773 40 H 0.226 0.774 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.871 -0.991 29.271 29.429 hybrid contribution 0.804 -1.382 -0.753 1.767 sum 3.675 -2.373 28.519 28.852 Atomic orbital electron populations 1.21947 0.95018 1.02052 1.02131 1.21068 0.95641 0.99694 0.93761 0.90857 1.21583 0.95435 1.00700 0.97327 1.21547 0.95720 1.00817 0.97762 1.21535 1.00237 0.99384 0.94559 1.21602 0.94624 1.01269 0.97829 1.21431 0.95808 1.00166 0.93814 0.90531 1.21290 1.00084 0.94865 0.82098 1.45144 1.61985 1.28826 1.04803 1.16032 0.80074 0.83603 0.80444 1.90914 1.45467 1.24994 1.85883 1.45385 1.60522 1.27906 1.05888 1.21497 1.00062 0.98407 0.78850 1.21884 0.99955 0.97616 0.96343 1.19038 0.97126 0.96719 0.88568 1.21241 1.35096 1.08444 0.91139 0.92612 1.25036 0.95292 0.95431 0.98795 1.69977 1.40428 1.26218 1.16640 0.86528 0.78630 0.81067 0.81703 1.19782 1.21012 1.21016 0.92621 0.92638 0.91915 0.91934 0.91957 0.91985 0.92170 0.92019 0.92027 0.91821 0.91652 0.91353 0.91865 0.77343 0.77404 0.92010 0.92017 0.92797 0.92801 0.96235 0.96235 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 8.85 37.16 0.33 -0.70 16 2 C -0.08 -0.53 2.25 -90.62 -0.20 -0.74 16 3 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.11 -0.64 5.20 -26.73 -0.14 -0.78 16 5 C -0.12 -0.67 5.92 -26.73 -0.16 -0.83 16 6 C -0.12 -0.70 5.92 -26.73 -0.16 -0.85 16 7 C -0.12 -0.77 5.08 -26.76 -0.14 -0.91 16 8 C -0.09 -0.66 1.75 -90.65 -0.16 -0.81 16 9 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 10 C 0.14 1.41 4.85 -4.04 -0.02 1.39 16 11 N -0.75 -8.32 5.29 -65.23 -0.34 -8.67 16 12 C 0.70 11.01 8.57 -86.92 -0.74 10.27 16 13 O -0.59 -12.05 16.34 5.29 0.09 -11.97 16 14 N -0.74 -11.08 5.56 -65.22 -0.36 -11.45 16 15 C 0.14 2.47 5.67 -4.04 -0.02 2.45 16 16 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 17 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 18 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 22 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.48 6.32 -51.93 -0.33 0.15 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.43 7.18 -51.93 -0.37 0.05 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.76 6.17 -51.93 -0.32 0.43 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.39 3.25 7.66 -40.82 -0.31 2.94 16 40 H 0.39 4.65 8.49 -40.82 -0.35 4.31 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 368.64 15.07 5.56 5.56 Total: -1.00 -32.90 368.64 -10.29 -43.18 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -8.83 Total: 0.07 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -2.10 Total: -7.04 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.03 Total: -46.38 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.90 -10.29 -43.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170885896.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.611 kcal (2) G-P(sol) polarization free energy of solvation -32.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds