Wall clock time and date at job start Tue Mar 31 2020 06:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46862 * 2 1 4 4 C 1.52996 * 109.47473 * 120.00038 * 2 1 3 5 5 C 1.53000 * 109.47328 * 60.00001 * 4 2 1 6 6 C 1.52997 * 109.47060 * 60.00126 * 5 4 2 7 7 C 1.53006 * 109.47127 * 300.00449 * 6 5 4 8 8 C 1.52997 * 109.47164 * 59.99836 * 7 6 5 9 9 H 1.09001 * 109.47375 * 59.99966 * 8 7 6 10 10 C 1.52996 * 109.46975 * 180.02562 * 8 7 6 11 11 N 1.46510 * 109.47178 * 294.99744 * 10 8 7 12 12 C 1.34773 * 120.00088 * 180.02562 * 11 10 8 13 13 O 1.21585 * 120.00168 * 359.97438 * 12 11 10 14 14 N 1.34772 * 119.99968 * 180.02562 * 12 11 10 15 15 C 1.46500 * 120.00333 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47188 * 179.97438 * 15 14 12 17 17 C 1.53004 * 109.47038 * 180.02562 * 16 15 14 18 18 C 1.50691 * 109.47452 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99773 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00431 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99529 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00173 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47066 * 90.00275 * 22 20 18 24 24 H 1.48498 * 109.47127 * 210.00328 * 22 20 18 25 25 H 1.48497 * 109.47011 * 330.00009 * 22 20 18 26 26 H 1.09004 * 109.46998 * 299.99522 * 1 2 3 27 27 H 1.09002 * 109.47722 * 60.00050 * 1 2 3 28 28 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47368 * 300.00213 * 4 2 1 30 30 H 1.09001 * 109.47372 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.47398 * 180.02562 * 5 4 2 32 32 H 1.09001 * 109.47194 * 300.00476 * 5 4 2 33 33 H 1.08998 * 109.47533 * 59.99948 * 6 5 4 34 34 H 1.08996 * 109.47853 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.47002 * 299.99574 * 7 6 5 36 36 H 1.09000 * 109.47050 * 179.97438 * 7 6 5 37 37 H 1.08998 * 109.47611 * 54.99598 * 10 8 7 38 38 H 1.09001 * 109.47165 * 175.00100 * 10 8 7 39 39 H 0.96999 * 119.99481 * 0.02562 * 11 10 8 40 40 H 0.97009 * 120.00143 * 359.97438 * 14 12 11 41 41 H 1.09000 * 109.46982 * 299.99811 * 15 14 12 42 42 H 1.09002 * 109.46731 * 59.99424 * 15 14 12 43 43 H 1.09000 * 109.47362 * 300.00015 * 16 15 14 44 44 H 1.08994 * 109.47090 * 60.00171 * 16 15 14 45 45 H 1.09000 * 109.46937 * 300.00129 * 17 16 15 46 46 H 1.09002 * 109.46926 * 59.99834 * 17 16 15 47 47 H 0.97003 * 119.99662 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5301 -2.1637 1.2492 6 6 2.0401 -2.8850 0.0000 7 6 1.5300 -2.1637 -1.2493 8 6 2.0400 -0.7212 -1.2493 9 1 3.1300 -0.7212 -1.2492 10 6 1.5295 0.0002 -2.4982 11 7 2.1132 -0.6172 -3.6917 12 6 1.8046 -0.1433 -4.9150 13 8 1.0414 0.7964 -5.0282 14 7 2.3412 -0.7116 -6.0130 15 6 2.0053 -0.1968 -7.3428 16 6 2.7430 -1.0123 -8.4066 17 6 2.3928 -0.4742 -9.7954 18 6 3.1188 -1.2777 -10.8433 19 1 3.7658 -2.0905 -10.5482 20 6 2.9572 -0.9751 -12.1787 21 7 2.1698 0.0150 -12.5379 22 14 3.8578 -1.9707 -13.4776 23 1 3.0152 -3.1212 -13.8919 24 1 4.1355 -1.1109 -14.6560 25 1 5.1387 -2.4715 -12.9175 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6767 -0.2074 2.1392 30 1 3.1300 -0.7208 1.2494 31 1 1.8931 -2.6775 2.1394 32 1 0.4401 -2.1638 1.2492 33 1 3.1300 -2.8850 -0.0001 34 1 1.6765 -3.9125 -0.0003 35 1 0.4400 -2.1638 -1.2493 36 1 1.8937 -2.6773 -2.1392 37 1 0.4432 -0.0768 -2.5437 38 1 1.8178 1.0504 -2.4545 39 1 2.7218 -1.3671 -3.6014 40 1 2.9498 -1.4616 -5.9227 41 1 0.9302 -0.2781 -7.5030 42 1 2.3053 0.8487 -7.4140 43 1 3.8181 -0.9306 -8.2463 44 1 2.4434 -2.0578 -8.3354 45 1 1.3177 -0.5555 -9.9560 46 1 2.6927 0.5714 -9.8662 47 1 2.0558 0.2277 -13.4775 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170885901.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:55 Heat of formation + Delta-G solvation = -79.058545 kcal Electronic energy + Delta-G solvation = -21952.573917 eV Core-core repulsion = 18747.311566 eV Total energy + Delta-G solvation = -3205.262351 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.25477 -39.26559 -35.60935 -34.67876 -33.28191 -32.46724 -31.55759 -30.68976 -27.60710 -26.65642 -25.35208 -23.07477 -22.56166 -21.55656 -20.78761 -20.34387 -18.87477 -17.90940 -16.59723 -16.06802 -16.05680 -15.62492 -15.03592 -14.67494 -14.50326 -14.43036 -14.09288 -13.87087 -13.76888 -13.22702 -13.01100 -12.88232 -12.27132 -12.22043 -11.88928 -11.84841 -11.78026 -11.62769 -11.41851 -11.17210 -10.88880 -10.69663 -10.58056 -10.56651 -10.41978 -10.30000 -10.04417 -9.83369 -9.41650 -9.11999 -9.10609 -8.53686 -8.35638 -6.00243 -4.03231 2.89020 3.31691 3.37979 3.40821 3.43900 4.23929 4.29583 4.30352 4.44044 4.50507 4.76803 4.82983 4.92646 4.98781 4.99770 5.09759 5.23976 5.32195 5.35434 5.41951 5.49613 5.59150 5.63790 5.64256 5.74452 5.75657 5.76955 5.84898 5.87060 5.91406 5.96334 6.02213 6.20985 6.21961 6.52352 6.57474 6.65642 6.85057 7.05481 7.13038 7.65876 7.79031 7.98907 8.21170 8.39908 8.81853 9.03508 9.60722 11.11057 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042225 B = 0.002242 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.951692 B =12486.729860 C =12939.599367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.083 4.083 3 H 0.072 0.928 4 C -0.113 4.113 5 C -0.122 4.122 6 C -0.119 4.119 7 C -0.117 4.117 8 C -0.093 4.093 9 H 0.076 0.924 10 C 0.143 3.857 11 N -0.751 5.751 12 C 0.699 3.301 13 O -0.594 6.594 14 N -0.743 5.743 15 C 0.135 3.865 16 C -0.120 4.120 17 C 0.024 3.976 18 C -0.522 4.522 19 H 0.055 0.945 20 C 0.056 3.944 21 N -0.893 5.893 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.393 0.607 40 H 0.393 0.607 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.126 -4.490 29.538 29.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.102 4.102 3 H 0.091 0.909 4 C -0.151 4.151 5 C -0.160 4.160 6 C -0.157 4.157 7 C -0.155 4.155 8 C -0.112 4.112 9 H 0.094 0.906 10 C 0.018 3.982 11 N -0.408 5.408 12 C 0.398 3.602 13 O -0.473 6.473 14 N -0.397 5.397 15 C 0.012 3.988 16 C -0.158 4.158 17 C -0.014 4.014 18 C -0.560 4.560 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.227 0.773 40 H 0.226 0.774 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.668 -3.492 29.250 29.465 hybrid contribution 1.066 -1.208 -0.745 1.775 sum 0.399 -4.700 28.505 28.893 Atomic orbital electron populations 1.22028 0.95071 1.02286 1.01958 1.21033 0.96230 0.99140 0.93765 0.90926 1.21550 1.00520 0.95654 0.97348 1.21582 1.01116 0.95605 0.97681 1.21527 1.00716 0.98830 0.94582 1.21646 1.01423 0.94636 0.97769 1.21411 1.00668 0.95333 0.93815 0.90582 1.21260 0.98211 0.96596 0.82106 1.45150 1.52481 1.38340 1.04807 1.16032 0.81088 0.82589 0.80446 1.90914 1.40039 1.30420 1.85890 1.45387 1.50973 1.37459 1.05882 1.21496 1.00104 0.98360 0.78851 1.21885 0.98898 0.98675 0.96345 1.19030 0.97223 0.96603 0.88554 1.21204 1.27509 1.16146 0.91145 0.92670 1.25037 0.95443 0.95274 0.98786 1.69969 1.37668 1.28886 1.16731 0.86577 0.80074 0.79970 0.81262 1.20675 1.21219 1.19919 0.92792 0.92132 0.91961 0.91951 0.92017 0.92302 0.91635 0.92065 0.92067 0.91311 0.91936 0.91478 0.91871 0.77338 0.77403 0.92010 0.92016 0.92801 0.92801 0.96248 0.96235 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 8.15 37.15 0.30 -0.74 16 2 C -0.08 -0.53 2.72 -90.62 -0.25 -0.78 16 3 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.11 -0.64 5.45 -26.73 -0.15 -0.78 16 5 C -0.12 -0.68 5.65 -26.73 -0.15 -0.83 16 6 C -0.12 -0.69 5.92 -26.73 -0.16 -0.85 16 7 C -0.12 -0.78 4.80 -26.73 -0.13 -0.90 16 8 C -0.09 -0.65 2.00 -90.62 -0.18 -0.83 16 9 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 10 C 0.14 1.42 4.56 -4.04 -0.02 1.40 16 11 N -0.75 -8.33 5.29 -65.22 -0.34 -8.67 16 12 C 0.70 11.02 8.57 -86.92 -0.74 10.27 16 13 O -0.59 -12.06 16.34 5.29 0.09 -11.97 16 14 N -0.74 -11.09 5.56 -65.23 -0.36 -11.45 16 15 C 0.14 2.47 5.67 -4.04 -0.02 2.45 16 16 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 17 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 18 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 22 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.46 6.54 -51.93 -0.34 0.12 16 28 H 0.06 0.40 4.81 -51.93 -0.25 0.16 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.37 6.43 -51.93 -0.33 0.04 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.50 6.43 -51.93 -0.33 0.17 16 36 H 0.06 0.42 7.18 -51.93 -0.37 0.04 16 37 H 0.07 0.75 6.71 -51.93 -0.35 0.40 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.39 3.25 7.67 -40.82 -0.31 2.94 16 40 H 0.39 4.65 8.49 -40.82 -0.35 4.31 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 362.07 15.07 5.46 5.46 Total: -1.00 -32.90 362.07 -10.16 -43.05 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -8.52 Total: 0.39 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -2.19 Total: -7.12 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.03 Total: -46.39 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.90 -10.16 -43.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170885901.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.007 kcal (2) G-P(sol) polarization free energy of solvation -32.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds