Wall clock time and date at job start Tue Mar 31 2020 06:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47098 * 2 1 4 4 C 1.53005 * 109.47107 * 240.00144 * 2 1 3 5 5 C 1.52999 * 109.47282 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.46954 * 59.99754 * 5 4 2 7 7 C 1.53005 * 109.47327 * 300.00218 * 6 5 4 8 8 H 1.08997 * 109.46686 * 299.99701 * 7 6 5 9 9 C 1.53002 * 109.46986 * 179.97438 * 7 6 5 10 10 N 1.46506 * 109.47042 * 65.00272 * 9 7 6 11 11 C 1.34771 * 119.99515 * 180.02562 * 10 9 7 12 12 O 1.21583 * 120.00543 * 0.26795 * 11 10 9 13 13 N 1.34784 * 119.99547 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99971 * 179.97438 * 13 11 10 15 15 C 1.52992 * 109.47267 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.47277 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.46913 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00408 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99553 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00389 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99821 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47207 * 90.00219 * 21 19 17 23 23 H 1.48501 * 109.47218 * 209.99776 * 21 19 17 24 24 H 1.48495 * 109.47413 * 330.00022 * 21 19 17 25 25 C 1.52993 * 109.47457 * 119.99760 * 2 1 3 26 26 H 1.08999 * 109.47143 * 299.99782 * 1 2 3 27 27 H 1.09001 * 109.47337 * 60.00419 * 1 2 3 28 28 H 1.09001 * 109.46617 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.46901 * 299.99471 * 4 2 1 30 30 H 1.09001 * 109.47004 * 59.99757 * 4 2 1 31 31 H 1.08995 * 109.47393 * 179.97438 * 5 4 2 32 32 H 1.09000 * 109.47386 * 300.00556 * 5 4 2 33 33 H 1.08996 * 109.47536 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.47114 * 60.00482 * 6 5 4 35 35 H 1.08996 * 109.47407 * 304.99604 * 9 7 6 36 36 H 1.09000 * 109.46986 * 184.99833 * 9 7 6 37 37 H 0.96999 * 120.00076 * 359.97438 * 10 9 7 38 38 H 0.96999 * 120.00044 * 359.97438 * 13 11 10 39 39 H 1.09004 * 109.47024 * 300.00310 * 14 13 11 40 40 H 1.09005 * 109.47136 * 59.99926 * 14 13 11 41 41 H 1.09004 * 109.47330 * 300.00096 * 15 14 13 42 42 H 1.09005 * 109.47124 * 59.99892 * 15 14 13 43 43 H 1.08997 * 109.46785 * 299.99511 * 16 15 14 44 44 H 1.08992 * 109.47085 * 59.99748 * 16 15 14 45 45 H 0.97005 * 120.00528 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.47037 * 60.00466 * 25 2 1 47 47 H 1.08999 * 109.47318 * 300.00351 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7207 -1.2497 6 6 4.0805 -1.4416 -0.0004 7 6 3.5705 -0.7203 1.2489 8 1 3.9335 0.3074 1.2487 9 6 4.0805 -1.4417 2.4981 10 7 5.5406 -1.3382 2.5598 11 6 6.2136 -1.9039 3.5814 12 8 5.6095 -2.5042 4.4491 13 7 7.5569 -1.8091 3.6379 14 6 8.2885 -2.4235 4.7485 15 6 9.7872 -2.1705 4.5740 16 6 10.5513 -2.8127 5.7336 17 6 12.0275 -2.5630 5.5620 18 1 12.3850 -2.0027 4.7108 19 6 12.9217 -3.0498 6.4917 20 7 12.4864 -3.7326 7.5281 21 14 14.7516 -2.7409 6.2786 22 1 15.1214 -1.4715 6.9548 23 1 15.5163 -3.8629 6.8799 24 1 15.0719 -2.6427 4.8320 25 6 2.0401 -0.7211 1.2492 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 1.6767 -1.7489 -1.2492 30 1 1.6766 -0.2074 -2.1393 31 1 3.9333 -1.2349 -2.1394 32 1 3.9330 0.3071 -1.2498 33 1 5.1705 -1.4409 -0.0003 34 1 3.7176 -2.4694 -0.0002 35 1 3.7921 -2.4919 2.4545 36 1 3.6459 -0.9821 3.3859 37 1 6.0230 -0.8633 1.8651 38 1 8.0393 -1.3342 2.9431 39 1 7.9538 -1.9870 5.6896 40 1 8.0995 -3.4970 4.7584 41 1 10.1222 -2.6067 3.6328 42 1 9.9758 -1.0970 4.5643 43 1 10.2165 -2.3769 6.6749 44 1 10.3626 -3.8862 5.7428 45 1 13.1154 -4.0748 8.1824 46 1 1.6768 -1.7489 1.2492 47 1 1.6767 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170886137.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:41 Heat of formation + Delta-G solvation = -85.277042 kcal Electronic energy + Delta-G solvation = -21647.119801 eV Core-core repulsion = 18441.587796 eV Total energy + Delta-G solvation = -3205.532005 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.04265 -39.09332 -35.71175 -34.86479 -33.29919 -32.66566 -31.71327 -30.78479 -27.02168 -26.72285 -25.48895 -22.95537 -22.46178 -20.92755 -20.77195 -20.40800 -20.03423 -17.97916 -16.55004 -15.99028 -15.75879 -15.50786 -14.95524 -14.80428 -14.51965 -14.34513 -14.27044 -13.90275 -13.70681 -13.59707 -12.76952 -12.73218 -12.27708 -12.24632 -12.09622 -11.78732 -11.75385 -11.63855 -11.38428 -11.19705 -10.89017 -10.81167 -10.69761 -10.58113 -10.50494 -10.35772 -10.05229 -9.83420 -9.41756 -9.13596 -9.10630 -8.54347 -8.35629 -6.00191 -4.03243 2.88293 3.31661 3.37983 3.40822 3.43428 4.20938 4.27836 4.31197 4.43737 4.49736 4.66939 4.79812 4.87350 4.98894 5.08694 5.11632 5.26072 5.27766 5.35438 5.36358 5.44160 5.52775 5.60630 5.64186 5.68222 5.75255 5.81563 5.84821 5.85223 5.87759 5.94169 5.97170 6.14097 6.21855 6.51206 6.57248 6.65531 6.84851 7.05367 7.12628 7.65889 7.79023 7.98870 8.20719 8.39838 8.81386 9.03486 9.60723 11.11054 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.045909 B = 0.002115 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.754271 B =13234.169296 C =13665.836801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 H 0.069 0.931 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.115 4.115 7 C -0.098 4.098 8 H 0.076 0.924 9 C 0.144 3.856 10 N -0.751 5.751 11 C 0.699 3.301 12 O -0.594 6.594 13 N -0.743 5.743 14 C 0.135 3.865 15 C -0.120 4.120 16 C 0.023 3.977 17 C -0.522 4.522 18 H 0.055 0.945 19 C 0.056 3.944 20 N -0.893 5.893 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.106 4.106 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.393 0.607 38 H 0.393 0.607 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.261 0.739 46 H 0.066 0.934 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.357 8.550 -18.917 30.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 H 0.088 0.912 4 C -0.153 4.153 5 C -0.157 4.157 6 C -0.153 4.153 7 C -0.117 4.117 8 H 0.094 0.906 9 C 0.019 3.981 10 N -0.408 5.408 11 C 0.398 3.602 12 O -0.473 6.473 13 N -0.397 5.397 14 C 0.012 3.988 15 C -0.158 4.158 16 C -0.014 4.014 17 C -0.560 4.560 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.532 5.532 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.144 4.144 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.227 0.773 38 H 0.226 0.774 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -22.857 7.870 -17.915 30.088 hybrid contribution 1.532 0.581 -0.671 1.771 sum -21.325 8.451 -18.586 29.523 Atomic orbital electron populations 1.21833 0.95229 1.01862 1.01629 1.21121 0.95401 0.99611 0.94839 0.91246 1.21609 0.95539 1.00726 0.97378 1.21538 0.95646 1.00748 0.97819 1.21611 1.00395 0.99571 0.93698 1.21421 0.96165 0.99990 0.94139 0.90551 1.21187 0.78876 1.00698 0.97295 1.45135 1.07520 1.60830 1.27284 1.16035 0.82075 0.79877 0.82169 1.90915 1.68053 1.47761 1.40523 1.45387 1.04753 1.60165 1.29391 1.21497 0.92070 0.97542 0.87708 1.21888 0.91175 1.00954 1.01799 1.19032 0.94169 0.96055 0.92170 1.21205 0.91721 1.34561 1.08537 0.92662 1.25035 0.98995 0.95193 0.95304 1.69967 1.34585 1.36478 1.12210 0.86580 0.85287 0.77785 0.78232 1.20683 1.21214 1.19925 1.21567 0.93819 1.01253 0.97804 0.92645 0.92789 0.92663 0.91945 0.92188 0.91977 0.92013 0.91878 0.91648 0.91768 0.91790 0.77303 0.77396 0.92016 0.91999 0.92797 0.92795 0.96239 0.96224 0.92941 0.91509 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.19 37.16 0.34 -0.43 16 2 C -0.09 -0.52 2.72 -90.62 -0.25 -0.76 16 3 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 4 C -0.12 -0.64 5.20 -26.73 -0.14 -0.78 16 5 C -0.12 -0.69 5.92 -26.73 -0.16 -0.85 16 6 C -0.12 -0.76 5.08 -26.73 -0.14 -0.90 16 7 C -0.10 -0.68 2.23 -90.59 -0.20 -0.88 16 8 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 9 C 0.14 1.43 5.06 -4.04 -0.02 1.41 16 10 N -0.75 -8.30 5.29 -65.22 -0.34 -8.65 16 11 C 0.70 11.02 8.57 -86.92 -0.74 10.28 16 12 O -0.59 -12.08 16.34 5.29 0.09 -11.99 16 13 N -0.74 -11.09 5.56 -65.23 -0.36 -11.45 16 14 C 0.14 2.47 5.67 -4.05 -0.02 2.45 16 15 C -0.12 -2.38 5.27 -26.73 -0.14 -2.53 16 16 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 17 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.98 13.29 55.43 0.74 -26.25 16 21 Si 0.89 21.60 29.54 -169.99 -5.02 16.57 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 25 C -0.11 -0.68 4.49 -26.71 -0.12 -0.80 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.42 7.18 -51.93 -0.37 0.05 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.39 3.23 7.67 -40.82 -0.31 2.92 16 38 H 0.39 4.65 8.49 -40.82 -0.35 4.30 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 372.50 15.07 5.61 5.61 Total: -1.00 -32.93 372.50 -10.46 -43.39 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -9.03 Total: -0.43 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -2.14 Total: -6.81 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.03 Total: -46.34 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.93 -10.46 -43.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170886137.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.891 kcal (2) G-P(sol) polarization free energy of solvation -32.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds