Wall clock time and date at job start Tue Mar 31 2020 06:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47615 * 2 1 4 4 C 1.53000 * 109.47170 * 239.99714 * 2 1 3 5 5 C 1.53001 * 109.47144 * 300.00292 * 4 2 1 6 6 C 1.53002 * 109.47221 * 299.99725 * 5 4 2 7 7 C 1.52992 * 109.46952 * 59.99916 * 6 5 4 8 8 H 1.08998 * 109.47695 * 60.00441 * 7 6 5 9 9 C 1.53004 * 109.47111 * 180.02562 * 7 6 5 10 10 N 1.46499 * 109.46973 * 294.99988 * 9 7 6 11 11 C 1.34774 * 120.00391 * 179.97438 * 10 9 7 12 12 O 1.21588 * 119.99464 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00332 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99880 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46691 * 179.97438 * 14 13 11 16 16 C 1.53006 * 109.46626 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46866 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99963 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00270 * 179.97438 * 17 16 15 20 20 N 1.31522 * 119.99835 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00496 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47183 * 60.00274 * 21 19 17 23 23 H 1.48496 * 109.47425 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47216 * 300.00267 * 21 19 17 25 25 C 1.53001 * 109.47225 * 300.00081 * 7 6 5 26 26 H 1.09001 * 109.46642 * 299.99662 * 1 2 3 27 27 H 1.08998 * 109.47343 * 60.00046 * 1 2 3 28 28 H 1.09005 * 109.47399 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46791 * 59.99902 * 4 2 1 30 30 H 1.08998 * 109.47892 * 179.97438 * 4 2 1 31 31 H 1.08999 * 109.47309 * 60.00004 * 5 4 2 32 32 H 1.08999 * 109.47230 * 179.97438 * 5 4 2 33 33 H 1.09004 * 109.46560 * 300.00113 * 6 5 4 34 34 H 1.08992 * 109.47248 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.47266 * 175.00438 * 9 7 6 36 36 H 1.09002 * 109.46968 * 55.00084 * 9 7 6 37 37 H 0.96999 * 119.99984 * 0.02562 * 10 9 7 38 38 H 0.96999 * 120.00043 * 359.97438 * 13 11 10 39 39 H 1.08993 * 109.47068 * 59.99359 * 14 13 11 40 40 H 1.09000 * 109.46872 * 299.99570 * 14 13 11 41 41 H 1.08993 * 109.47839 * 59.99891 * 15 14 13 42 42 H 1.09000 * 109.47160 * 299.99453 * 15 14 13 43 43 H 1.09000 * 109.47050 * 299.99699 * 16 15 14 44 44 H 1.09001 * 109.46801 * 59.99811 * 16 15 14 45 45 H 0.96992 * 120.00038 * 180.02562 * 20 19 17 46 46 H 1.09007 * 109.47115 * 179.97438 * 25 7 6 47 47 H 1.08999 * 109.47309 * 299.99804 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5299 -2.1638 -1.2492 6 6 2.0399 -2.8851 0.0001 7 6 1.5300 -2.1638 1.2492 8 1 0.4400 -2.1638 1.2494 9 6 2.0405 -2.8847 2.4985 10 7 1.4567 -4.2269 2.5606 11 6 1.7660 -5.0498 3.5821 12 8 2.5292 -4.6779 4.4525 13 7 1.2294 -6.2848 3.6389 14 6 1.5653 -7.1791 4.7497 15 6 0.8275 -8.5081 4.5754 16 6 1.1788 -9.4422 5.7352 17 6 0.4517 -10.7510 5.5639 18 1 -0.1965 -10.9013 4.7132 19 6 0.6138 -11.7565 6.4932 20 7 1.4027 -11.5733 7.5294 21 14 -0.2879 -13.3786 6.2813 22 1 0.1182 -14.0069 4.9984 23 1 0.0530 -14.2853 7.4068 24 1 -1.7525 -13.1330 6.2703 25 6 2.0400 -0.7213 1.2492 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6766 -0.2075 -2.1392 30 1 3.1299 -0.7210 -1.2495 31 1 0.4399 -2.1638 -1.2492 32 1 1.8929 -2.6776 -2.1393 33 1 3.1299 -2.8851 0.0000 34 1 1.6769 -3.9128 -0.0001 35 1 1.7521 -2.3218 3.3862 36 1 3.1268 -2.9626 2.4546 37 1 0.8482 -4.5237 1.8660 38 1 0.6202 -6.5814 2.9447 39 1 1.2653 -6.7180 5.6907 40 1 2.6404 -7.3584 4.7594 41 1 1.1270 -8.9693 3.6344 42 1 -0.2475 -8.3284 4.5660 43 1 2.2538 -9.6218 5.7442 44 1 0.8795 -8.9811 6.6765 45 1 1.5171 -12.2808 8.1830 46 1 1.6763 -0.2073 2.1390 47 1 3.1300 -0.7213 1.2492 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170886142.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:47 Heat of formation + Delta-G solvation = -80.807556 kcal Electronic energy + Delta-G solvation = -21827.766650 eV Core-core repulsion = 18622.428457 eV Total energy + Delta-G solvation = -3205.338194 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.15567 -39.26269 -35.70160 -34.82431 -33.28712 -32.17164 -31.69376 -30.77572 -27.17499 -26.94292 -25.47859 -22.98518 -22.71700 -21.41705 -20.79110 -20.34028 -18.98382 -18.01333 -16.57609 -16.01376 -15.92727 -15.56526 -15.03910 -14.77168 -14.50917 -14.30359 -14.23220 -13.88671 -13.84589 -13.46545 -13.01122 -12.52572 -12.31751 -12.24439 -11.95904 -11.82318 -11.78478 -11.65414 -11.40011 -11.27116 -10.86936 -10.69429 -10.62781 -10.59901 -10.39376 -10.34309 -10.04514 -9.83054 -9.41414 -9.13271 -9.11690 -8.54219 -8.35195 -5.99938 -4.03082 2.88748 3.33014 3.37747 3.39663 3.43639 4.24272 4.28876 4.30060 4.43337 4.49417 4.71470 4.84479 4.87031 4.98239 5.01718 5.13684 5.20053 5.32018 5.35528 5.41938 5.46123 5.54536 5.62023 5.65804 5.67140 5.75520 5.81229 5.84531 5.85746 5.88726 5.96038 6.00819 6.16373 6.21924 6.51660 6.57333 6.65603 6.84918 7.05403 7.12773 7.65689 7.79099 7.99027 8.20888 8.39929 8.81592 9.03414 9.60788 11.11313 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040495 B = 0.002189 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.281286 B =12785.828336 C =13136.548680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.091 4.091 3 H 0.069 0.931 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.115 4.115 7 C -0.100 4.100 8 H 0.079 0.921 9 C 0.144 3.856 10 N -0.751 5.751 11 C 0.699 3.301 12 O -0.594 6.594 13 N -0.743 5.743 14 C 0.135 3.865 15 C -0.120 4.120 16 C 0.024 3.976 17 C -0.522 4.522 18 H 0.055 0.945 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C -0.107 4.107 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.393 0.607 38 H 0.393 0.607 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.262 0.738 46 H 0.066 0.934 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.220 23.487 -18.916 30.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.109 4.109 3 H 0.087 0.913 4 C -0.153 4.153 5 C -0.159 4.159 6 C -0.152 4.152 7 C -0.119 4.119 8 H 0.098 0.902 9 C 0.019 3.981 10 N -0.407 5.407 11 C 0.398 3.602 12 O -0.473 6.473 13 N -0.397 5.397 14 C 0.012 3.988 15 C -0.158 4.158 16 C -0.014 4.014 17 C -0.561 4.561 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.722 3.278 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.145 4.145 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.227 0.773 38 H 0.226 0.774 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.421 23.733 -17.904 29.732 hybrid contribution -1.034 -1.241 -0.690 1.756 sum -1.455 22.493 -18.594 29.219 Atomic orbital electron populations 1.21954 0.95314 1.02174 1.01476 1.21081 0.95961 0.99047 0.94840 0.91256 1.21572 1.00596 0.95706 0.97398 1.21574 1.01002 0.95577 0.97752 1.21598 1.01146 0.98756 0.93718 1.21448 1.01150 0.95177 0.94082 0.90233 1.21194 0.98055 0.81495 0.97341 1.45133 1.52460 1.15848 1.27306 1.16036 0.81086 0.80855 0.82185 1.90916 1.40044 1.75978 1.40321 1.45386 1.50938 1.13956 1.29416 1.21497 1.00112 0.89496 0.87708 1.21886 0.98892 0.93234 1.01795 1.19027 0.97211 0.92978 0.92162 1.21168 1.27477 0.98847 1.08584 0.92722 1.25037 0.95425 0.98784 0.95280 1.69959 1.37521 1.33569 1.12215 0.86635 0.80134 0.83474 0.77592 1.20264 1.21287 1.20269 1.21527 1.00922 0.94198 0.97829 0.92776 0.92949 0.91982 0.92196 0.91997 0.91682 0.92100 0.91694 0.91914 0.91812 0.91810 0.77328 0.77403 0.92013 0.92004 0.92802 0.92798 0.96240 0.96248 0.92880 0.91570 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 8.50 37.16 0.32 -0.52 16 2 C -0.09 -0.51 3.19 -90.62 -0.29 -0.80 16 3 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 4 C -0.12 -0.64 5.45 -26.73 -0.15 -0.79 16 5 C -0.12 -0.70 5.65 -26.73 -0.15 -0.85 16 6 C -0.11 -0.75 5.08 -26.73 -0.14 -0.89 16 7 C -0.10 -0.69 1.95 -90.62 -0.18 -0.86 16 8 H 0.08 0.53 6.43 -51.93 -0.33 0.20 16 9 C 0.14 1.43 5.06 -4.04 -0.02 1.41 16 10 N -0.75 -8.29 5.29 -65.22 -0.34 -8.63 16 11 C 0.70 11.01 8.57 -86.92 -0.74 10.27 16 12 O -0.59 -12.08 16.34 5.29 0.09 -11.99 16 13 N -0.74 -11.08 5.56 -65.22 -0.36 -11.44 16 14 C 0.14 2.47 5.67 -4.04 -0.02 2.45 16 15 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 16 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 17 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 18 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 21 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 25 C -0.11 -0.67 4.73 -26.73 -0.13 -0.80 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.35 4.81 -51.93 -0.25 0.10 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.36 6.43 -51.93 -0.33 0.03 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.42 7.18 -51.93 -0.37 0.04 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.39 3.22 7.67 -40.82 -0.31 2.91 16 38 H 0.39 4.64 8.49 -40.82 -0.35 4.30 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 365.47 15.07 5.51 5.51 Total: -1.00 -32.91 365.47 -10.26 -43.18 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -8.68 Total: -0.01 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -2.19 Total: -6.92 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.03 Total: -46.34 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.91 -10.26 -43.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170886142.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.630 kcal (2) G-P(sol) polarization free energy of solvation -32.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds