Wall clock time and date at job start Tue Mar 31 2020 06:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.47269 * 299.99806 * 5 4 2 7 7 C 1.53005 * 109.46542 * 59.99862 * 6 5 4 8 8 H 1.09001 * 109.46812 * 60.00243 * 7 6 5 9 9 C 1.52996 * 109.47056 * 179.97438 * 7 6 5 10 10 N 1.46501 * 109.47088 * 295.00508 * 9 7 6 11 11 C 1.34783 * 119.99703 * 180.02562 * 10 9 7 12 12 O 1.21585 * 120.00251 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99810 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00258 * 179.97438 * 13 11 10 15 15 C 1.52993 * 109.47216 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47066 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47001 * 179.97438 * 16 15 14 18 18 H 1.07993 * 120.00552 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99507 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00087 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99723 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47268 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47432 * 119.99685 * 21 19 17 24 24 H 1.48497 * 109.47047 * 239.99941 * 21 19 17 25 25 C 1.52997 * 109.47452 * 300.00026 * 7 6 5 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 1.09002 * 109.47103 * 300.00247 * 4 2 1 30 30 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 31 31 H 1.09001 * 109.47289 * 60.00300 * 5 4 2 32 32 H 1.09004 * 109.47261 * 180.02562 * 5 4 2 33 33 H 1.09000 * 109.47192 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.46876 * 300.00443 * 6 5 4 35 35 H 1.09008 * 109.47057 * 54.99968 * 9 7 6 36 36 H 1.08997 * 109.47395 * 174.99794 * 9 7 6 37 37 H 0.96992 * 120.00226 * 359.97438 * 10 9 7 38 38 H 0.97005 * 119.99994 * 0.02562 * 13 11 10 39 39 H 1.09000 * 109.46982 * 300.00216 * 14 13 11 40 40 H 1.09002 * 109.46731 * 59.99829 * 14 13 11 41 41 H 1.09000 * 109.47080 * 299.99860 * 15 14 13 42 42 H 1.09002 * 109.47651 * 60.00097 * 15 14 13 43 43 H 1.09000 * 109.46937 * 299.99801 * 16 15 14 44 44 H 1.09002 * 109.46926 * 59.99506 * 16 15 14 45 45 H 0.97003 * 119.99892 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.46832 * 300.00199 * 25 7 6 47 47 H 1.08993 * 109.47194 * 179.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5700 -0.7218 1.2488 6 6 4.0795 -1.4434 -0.0005 7 6 3.5694 -0.7221 -1.2497 8 1 3.9332 0.3054 -1.2498 9 6 4.0794 -1.4432 -2.4990 10 7 5.5395 -1.3399 -2.5606 11 6 6.2124 -1.9046 -3.5829 12 8 5.6077 -2.5002 -4.4535 13 7 7.5556 -1.8091 -3.6399 14 6 8.2871 -2.4234 -4.7507 15 6 9.7859 -2.1705 -4.5760 16 6 10.5498 -2.8115 -5.7364 17 6 12.0261 -2.5619 -5.5647 18 1 12.3837 -2.0018 -4.7135 19 6 12.9201 -3.0478 -6.4952 20 7 12.4847 -3.7295 -7.5321 21 14 14.7500 -2.7391 -6.2821 22 1 14.9785 -1.9535 -5.0428 23 1 15.4631 -4.0380 -6.1837 24 1 15.2633 -1.9799 -7.4505 25 6 2.0395 -0.7215 -1.2494 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.6767 -0.2074 2.1392 30 1 1.6768 -1.7489 1.2491 31 1 3.9338 0.3057 1.2487 32 1 3.9334 -1.2361 2.1386 33 1 5.1695 -1.4434 -0.0009 34 1 3.7158 -2.4709 -0.0002 35 1 3.7911 -2.4936 -2.4553 36 1 3.6447 -0.9838 -3.3866 37 1 6.0218 -0.8645 -1.8663 38 1 8.0380 -1.3343 -2.9451 39 1 8.0988 -3.4969 -4.7602 40 1 7.9519 -1.9873 -5.6917 41 1 9.9745 -1.0970 -4.5663 42 1 10.1208 -2.6069 -3.6350 43 1 10.3612 -3.8850 -5.7466 44 1 10.2148 -2.3748 -6.6773 45 1 13.1136 -4.0710 -8.1869 46 1 1.6758 -1.7491 -1.2492 47 1 1.6761 -0.2073 -2.1390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170886145.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:50 Heat of formation + Delta-G solvation = -85.333993 kcal Electronic energy + Delta-G solvation = -21647.180758 eV Core-core repulsion = 18441.646284 eV Total energy + Delta-G solvation = -3205.534475 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.04317 -39.09446 -35.71243 -34.86536 -33.30028 -32.66560 -31.71431 -30.78643 -27.02287 -26.72254 -25.48977 -22.95716 -22.46149 -20.92797 -20.77255 -20.40885 -20.03409 -17.97931 -16.55175 -15.99241 -15.75943 -15.50816 -14.95589 -14.80440 -14.51928 -14.34465 -14.26917 -13.90482 -13.70561 -13.59744 -12.76940 -12.73250 -12.28437 -12.24842 -12.09662 -11.78424 -11.75360 -11.63887 -11.38393 -11.19718 -10.90821 -10.81107 -10.70197 -10.55765 -10.50465 -10.35735 -10.05295 -9.83828 -9.42126 -9.13588 -9.09374 -8.54391 -8.36141 -6.00540 -4.03453 2.88266 3.30692 3.38122 3.41667 3.43389 4.20850 4.27819 4.31273 4.43663 4.49687 4.66927 4.79809 4.87333 4.98886 5.08664 5.11761 5.26078 5.27794 5.35238 5.36370 5.44146 5.52731 5.60599 5.64178 5.68231 5.75208 5.81521 5.84794 5.85212 5.87788 5.94146 5.97185 6.14081 6.21811 6.51248 6.57210 6.65483 6.84800 7.05311 7.12603 7.66007 7.78857 7.98727 8.20687 8.39713 8.81356 9.03541 9.60576 11.10780 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.045897 B = 0.002115 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.921506 B =13234.002525 C =13666.016698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 H 0.069 0.931 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.115 4.115 7 C -0.098 4.098 8 H 0.076 0.924 9 C 0.144 3.856 10 N -0.751 5.751 11 C 0.699 3.301 12 O -0.594 6.594 13 N -0.743 5.743 14 C 0.135 3.865 15 C -0.120 4.120 16 C 0.023 3.977 17 C -0.521 4.521 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.893 5.893 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.106 4.106 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.393 0.607 38 H 0.393 0.607 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.260 0.740 46 H 0.066 0.934 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.357 8.540 18.942 30.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 H 0.088 0.912 4 C -0.153 4.153 5 C -0.158 4.158 6 C -0.153 4.153 7 C -0.117 4.117 8 H 0.094 0.906 9 C 0.019 3.981 10 N -0.408 5.408 11 C 0.398 3.602 12 O -0.473 6.473 13 N -0.397 5.397 14 C 0.012 3.988 15 C -0.158 4.158 16 C -0.015 4.015 17 C -0.560 4.560 18 H 0.074 0.926 19 C -0.146 4.146 20 N -0.532 5.532 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.144 4.144 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.227 0.773 38 H 0.226 0.774 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.070 0.930 46 H 0.085 0.915 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -22.858 7.870 17.941 30.105 hybrid contribution 1.532 0.563 0.666 1.762 sum -21.326 8.433 18.607 29.532 Atomic orbital electron populations 1.21834 0.95229 1.01862 1.01629 1.21120 0.95404 0.99609 0.94838 0.91243 1.21608 0.95541 1.00725 0.97381 1.21540 0.95647 1.00745 0.97820 1.21612 1.00399 0.99565 0.93696 1.21411 0.96172 0.99991 0.94141 0.90560 1.21185 0.78880 1.00696 0.97295 1.45135 1.07519 1.60818 1.27299 1.16036 0.82078 0.79865 0.82178 1.90915 1.68022 1.48010 1.40305 1.45387 1.04768 1.60160 1.29377 1.21497 0.92070 0.97537 0.87713 1.21886 0.91173 1.00966 1.01789 1.19040 0.94190 0.96064 0.92167 1.21247 0.91714 1.34514 1.08485 0.92602 1.25040 0.99010 0.95218 0.95289 1.69977 1.34467 1.36612 1.12182 0.86524 0.85437 0.77927 0.78017 1.19785 1.21014 1.21021 1.21560 0.93824 1.01249 0.97807 0.92790 0.92662 0.92645 0.92183 0.91951 0.92014 0.91978 0.91873 0.91648 0.91775 0.91787 0.77305 0.77394 0.92012 0.92001 0.92796 0.92792 0.96227 0.96228 0.92995 0.91511 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.19 37.16 0.34 -0.43 16 2 C -0.09 -0.52 2.72 -90.62 -0.25 -0.76 16 3 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 4 C -0.12 -0.64 5.20 -26.74 -0.14 -0.78 16 5 C -0.12 -0.69 5.92 -26.73 -0.16 -0.85 16 6 C -0.12 -0.76 5.08 -26.73 -0.14 -0.90 16 7 C -0.10 -0.68 2.22 -90.62 -0.20 -0.88 16 8 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 9 C 0.14 1.43 5.07 -4.04 -0.02 1.41 16 10 N -0.75 -8.30 5.29 -65.22 -0.34 -8.65 16 11 C 0.70 11.02 8.57 -86.91 -0.74 10.28 16 12 O -0.59 -12.08 16.34 5.29 0.09 -11.99 16 13 N -0.74 -11.08 5.56 -65.23 -0.36 -11.45 16 14 C 0.14 2.47 5.67 -4.05 -0.02 2.45 16 15 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 16 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 17 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.89 -26.98 13.29 55.43 0.74 -26.25 16 21 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 C -0.11 -0.68 4.48 -26.73 -0.12 -0.80 16 26 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.42 7.18 -51.93 -0.37 0.05 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.39 3.23 7.67 -40.82 -0.31 2.92 16 38 H 0.39 4.65 8.49 -40.82 -0.35 4.30 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 372.50 15.07 5.61 5.61 Total: -1.00 -32.96 372.50 -10.46 -43.42 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -9.03 Total: -0.46 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -2.14 Total: -6.81 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.03 Total: -46.34 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.96 -10.46 -43.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170886145.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.916 kcal (2) G-P(sol) polarization free energy of solvation -32.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds