Wall clock time and date at job start Tue Mar 31 2020 06:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47194 * 2 1 4 4 C 1.50696 * 109.47358 * 120.00303 * 2 1 3 5 5 O 1.21282 * 120.00063 * 123.36694 * 4 2 1 6 6 N 1.34774 * 120.00123 * 303.37019 * 4 2 1 7 7 C 1.46504 * 120.00035 * 179.97438 * 6 4 2 8 8 C 1.52999 * 109.46788 * 179.97438 * 7 6 4 9 9 C 1.53003 * 109.46845 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.46949 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00657 * 359.97438 * 10 9 8 12 12 C 1.37883 * 119.99912 * 180.02562 * 10 9 8 13 13 N 1.31523 * 119.99922 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99984 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47110 * 90.00195 * 14 12 10 16 16 H 1.48503 * 109.46803 * 209.99778 * 14 12 10 17 17 H 1.48498 * 109.47261 * 329.99886 * 14 12 10 18 18 N 1.46905 * 109.46873 * 240.00537 * 2 1 3 19 19 C 1.48811 * 111.18537 * 319.20102 * 18 2 1 20 20 H 1.09000 * 110.51751 * 41.07778 * 19 18 2 21 21 C 1.53001 * 110.84142 * 278.09261 * 19 18 2 22 22 C 1.54940 * 103.34498 * 159.50753 * 19 18 2 23 23 C 1.54592 * 102.92090 * 322.69095 * 22 19 18 24 24 C 1.47901 * 111.00017 * 76.54063 * 18 2 1 25 25 H 1.09000 * 109.91840 * 333.70427 * 24 18 2 26 26 C 1.53000 * 109.91840 * 94.80204 * 24 18 2 27 27 H 1.09005 * 109.46876 * 188.64472 * 1 2 3 28 28 H 1.09002 * 109.46822 * 308.64315 * 1 2 3 29 29 H 1.08997 * 109.47244 * 68.64383 * 1 2 3 30 30 H 0.97001 * 120.00101 * 359.97438 * 6 4 2 31 31 H 1.08992 * 109.47173 * 300.00077 * 7 6 4 32 32 H 1.09001 * 109.46742 * 59.99856 * 7 6 4 33 33 H 1.09001 * 109.47723 * 300.00099 * 8 7 6 34 34 H 1.09001 * 109.47231 * 60.00603 * 8 7 6 35 35 H 1.09001 * 109.47046 * 300.00519 * 9 8 7 36 36 H 1.09003 * 109.47208 * 60.00433 * 9 8 7 37 37 H 0.96992 * 119.99636 * 180.02562 * 13 12 10 38 38 H 1.08994 * 109.46961 * 313.85653 * 21 19 18 39 39 H 1.08999 * 109.46800 * 73.85634 * 21 19 18 40 40 H 1.09003 * 109.46985 * 193.85335 * 21 19 18 41 41 H 1.09003 * 110.71703 * 204.33074 * 22 19 18 42 42 H 1.08998 * 110.87400 * 81.12381 * 22 19 18 43 43 H 1.08999 * 110.30749 * 263.03847 * 23 22 19 44 44 H 1.09002 * 110.30519 * 140.87769 * 23 22 19 45 45 H 1.08995 * 109.47741 * 179.59628 * 26 24 18 46 46 H 1.09007 * 109.47007 * 59.59464 * 26 24 18 47 47 H 1.09001 * 109.47346 * 299.59934 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7792 -1.6597 1.1201 6 7 1.6518 -0.2910 2.4533 7 6 2.1398 -0.9821 3.6494 8 6 1.5623 -0.3110 4.8973 9 6 2.0714 -1.0331 6.1464 10 6 1.5022 -0.3725 7.3755 11 1 0.8435 0.4775 7.2758 12 6 1.8231 -0.8528 8.6275 13 7 2.6256 -1.8877 8.7491 14 14 1.1180 -0.0336 10.1511 15 1 -0.1719 -0.6774 10.5073 16 1 2.0728 -0.1808 11.2789 17 1 0.8927 1.4086 9.8782 18 7 2.0197 -0.6924 -1.1996 19 6 1.2086 -1.9061 -1.4886 20 1 0.1495 -1.7052 -1.3273 21 6 1.6695 -3.0860 -0.6305 22 6 1.4916 -2.1767 -2.9878 23 6 1.5692 -0.7538 -3.5872 24 6 1.8933 0.1672 -2.3964 25 1 1.0872 0.8868 -2.2534 26 6 3.2101 0.9037 -2.6506 27 1 -0.3633 -1.0160 0.1545 28 1 -0.3633 0.6418 0.8027 29 1 -0.3633 0.3742 -0.9571 30 1 1.0548 0.4684 2.5416 31 1 1.8262 -2.0255 3.6195 32 1 3.2281 -0.9305 3.6802 33 1 1.8762 0.7324 4.9270 34 1 0.4739 -0.3623 4.8667 35 1 1.7572 -2.0764 6.1165 36 1 3.1598 -0.9823 6.1773 37 1 2.8510 -2.2257 9.6298 38 1 2.7573 -3.1498 -0.6548 39 1 1.3370 -2.9396 0.3971 40 1 1.2425 -4.0091 -1.0226 41 1 0.6754 -2.7413 -3.4385 42 1 2.4384 -2.7013 -3.1157 43 1 0.6124 -0.4772 -4.0300 44 1 2.3618 -0.7005 -4.3335 45 1 3.1113 1.5292 -3.5377 46 1 4.0085 0.1778 -2.8049 47 1 3.4487 1.5288 -1.7901 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170902475.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:49 Heat of formation + Delta-G solvation = -47.475345 kcal Electronic energy + Delta-G solvation = -22925.610224 eV Core-core repulsion = 19721.717423 eV Total energy + Delta-G solvation = -3203.892801 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.56080 -38.60314 -35.32461 -33.91818 -33.20314 -32.66315 -31.13052 -29.11302 -28.08255 -26.77830 -24.62230 -24.02561 -22.81015 -20.90629 -20.60184 -20.18608 -19.04344 -17.23114 -16.48144 -16.32015 -15.57657 -15.17951 -14.92448 -14.72568 -14.46695 -14.37482 -13.64304 -13.51420 -13.22842 -12.89115 -12.73311 -12.53218 -12.29933 -12.09605 -12.02268 -11.83366 -11.75463 -11.65645 -11.46945 -11.19227 -10.91657 -10.87649 -10.71355 -10.68030 -10.58117 -10.50727 -9.84402 -9.66502 -9.25963 -9.09279 -8.63347 -8.47993 -8.37013 -6.01671 -4.04768 2.91161 3.24141 3.30595 3.37045 3.39899 3.85763 4.32747 4.44043 4.48476 4.68484 4.75860 4.83817 4.95517 4.96481 5.13755 5.18963 5.34038 5.34737 5.37906 5.42812 5.53232 5.57161 5.66271 5.69121 5.74288 5.77518 5.80960 5.85553 5.95436 6.00069 6.09440 6.18504 6.20017 6.50277 6.61651 6.62683 6.80773 6.89932 6.92224 7.03399 7.64035 7.76996 7.82602 7.97338 8.38203 8.55096 9.02030 9.59370 11.09656 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038634 B = 0.002773 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.581084 B =10095.052109 C =10309.450038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.056 3.944 3 H 0.102 0.898 4 C 0.511 3.489 5 O -0.514 6.514 6 N -0.730 5.730 7 C 0.120 3.880 8 C -0.120 4.120 9 C 0.024 3.976 10 C -0.522 4.522 11 H 0.055 0.945 12 C 0.057 3.943 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 N -0.484 5.484 19 C 0.056 3.944 20 H 0.059 0.941 21 C -0.127 4.127 22 C -0.119 4.119 23 C -0.126 4.126 24 C 0.060 3.940 25 H 0.052 0.948 26 C -0.135 4.135 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.395 0.605 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.018 0.982 36 H 0.019 0.981 37 H 0.261 0.739 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.043 0.957 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.055 0.945 46 H 0.063 0.937 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.718 4.463 -25.315 26.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.057 4.057 3 H 0.120 0.880 4 C 0.295 3.705 5 O -0.389 6.389 6 N -0.382 5.382 7 C -0.003 4.003 8 C -0.158 4.158 9 C -0.014 4.014 10 C -0.561 4.561 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.533 5.533 14 Si 0.721 3.279 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 N -0.209 5.209 19 C -0.051 4.051 20 H 0.077 0.923 21 C -0.185 4.185 22 C -0.157 4.157 23 C -0.164 4.164 24 C -0.048 4.048 25 H 0.070 0.930 26 C -0.193 4.193 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.228 0.772 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.512 3.510 -25.150 25.636 hybrid contribution -1.527 1.116 0.951 2.117 sum -5.039 4.626 -24.199 25.147 Atomic orbital electron populations 1.22410 0.95497 1.03317 1.02880 1.21751 0.94075 0.98839 0.91041 0.87978 1.20258 0.81613 0.84563 0.84080 1.90707 1.34783 1.27051 1.86313 1.46216 1.50790 1.35135 1.06095 1.21584 0.99129 0.96404 0.83198 1.21878 0.99808 0.99737 0.94400 1.19026 0.96673 0.95639 0.90025 1.21209 1.28930 1.14902 0.91023 0.92679 1.25036 0.95172 0.95082 0.99192 1.69968 1.35435 1.24297 1.23582 0.86584 0.78841 0.79795 0.82713 1.20666 1.21194 1.19901 1.64676 1.51126 1.04581 1.00484 1.22984 0.95740 0.91445 0.94968 0.92278 1.21759 1.03090 0.94497 0.99113 1.22517 1.02247 0.96418 0.94498 1.22450 1.01597 0.95121 0.97267 1.22384 0.97651 0.94670 0.90144 0.92960 1.21760 0.96901 0.99777 1.00822 0.91234 0.91213 0.91647 0.77187 0.91992 0.91901 0.92806 0.92859 0.96326 0.96287 0.92922 0.90837 0.92235 0.93840 0.91332 0.90625 0.91711 0.90846 0.92618 0.91801 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 7.60 37.16 0.28 -1.31 16 2 C 0.06 0.61 2.62 -68.86 -0.18 0.43 16 3 H 0.10 1.00 7.99 -51.93 -0.41 0.58 16 4 C 0.51 7.45 6.38 -10.99 -0.07 7.38 16 5 O -0.51 -9.35 12.57 5.56 0.07 -9.28 16 6 N -0.73 -10.35 5.43 -60.30 -0.33 -10.68 16 7 C 0.12 2.11 5.67 -4.04 -0.02 2.09 16 8 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 11 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 12 C 0.06 1.62 5.46 -17.81 -0.10 1.52 16 13 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 14 Si 0.89 21.53 29.54 -169.99 -5.02 16.50 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 N -0.48 -5.45 4.26 -208.09 -0.89 -6.33 16 19 C 0.06 0.60 2.47 -65.63 -0.16 0.44 16 20 H 0.06 0.60 5.36 -51.93 -0.28 0.32 16 21 C -0.13 -1.64 7.74 37.16 0.29 -1.35 16 22 C -0.12 -1.04 6.50 -24.87 -0.16 -1.20 16 23 C -0.13 -0.97 6.57 -25.38 -0.17 -1.13 16 24 C 0.06 0.53 2.76 -66.65 -0.18 0.34 16 25 H 0.05 0.42 6.62 -51.93 -0.34 0.08 16 26 C -0.13 -1.14 9.32 37.16 0.35 -0.79 16 27 H 0.07 0.68 6.58 -51.93 -0.34 0.34 16 28 H 0.07 0.53 7.66 -51.93 -0.40 0.13 16 29 H 0.06 0.49 6.82 -51.93 -0.35 0.14 16 30 H 0.39 4.54 7.87 -40.82 -0.32 4.22 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.07 1.10 7.53 -51.93 -0.39 0.71 16 39 H 0.06 0.89 6.09 -51.93 -0.32 0.58 16 40 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.52 7.69 -51.93 -0.40 0.12 16 45 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 360.87 15.07 5.44 5.44 Total: -1.00 -31.69 360.87 -9.30 -41.00 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -8.59 Total: 0.11 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -0.72 Total: -10.56 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: -0.48 Total: -43.21 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.07 Total: -9.28 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.69 -9.30 -41.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170902475.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.478 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds