Wall clock time and date at job start Tue Mar 31 2020 06:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47257 * 2 1 4 4 C 1.50698 * 109.47162 * 120.00014 * 2 1 3 5 5 O 1.21273 * 120.00298 * 162.84930 * 4 2 1 6 6 N 1.34783 * 119.99787 * 342.84977 * 4 2 1 7 7 C 1.46505 * 119.99628 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.46738 * 180.02562 * 7 6 4 9 9 C 1.52999 * 109.46935 * 180.02562 * 8 7 6 10 10 C 1.50708 * 109.47106 * 179.97438 * 9 8 7 11 11 H 1.08007 * 119.99627 * 0.02562 * 10 9 8 12 12 C 1.37866 * 119.99886 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00255 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99792 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47163 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47011 * 120.00016 * 14 12 10 17 17 H 1.48503 * 109.46940 * 239.99881 * 14 12 10 18 18 N 1.46903 * 109.47261 * 239.99887 * 2 1 3 19 19 C 1.47441 * 110.99730 * 74.40151 * 18 2 1 20 20 H 1.08995 * 109.89001 * 242.66016 * 19 18 2 21 21 C 1.53002 * 109.89030 * 3.85234 * 19 18 2 22 22 C 1.54318 * 107.23379 * 123.25885 * 19 18 2 23 23 C 1.55143 * 103.01991 * 22.27998 * 22 19 18 24 24 C 1.47846 * 110.99781 * 195.24525 * 18 2 1 25 25 H 1.08994 * 110.37734 * 332.46382 * 24 18 2 26 26 C 1.52997 * 110.37584 * 94.69822 * 24 18 2 27 27 H 1.09003 * 109.47148 * 80.51635 * 1 2 3 28 28 H 1.08996 * 109.47131 * 200.51059 * 1 2 3 29 29 H 1.08994 * 109.47441 * 320.51612 * 1 2 3 30 30 H 0.96996 * 120.00278 * 0.02562 * 6 4 2 31 31 H 1.08998 * 109.47169 * 300.00030 * 7 6 4 32 32 H 1.08997 * 109.47208 * 60.00660 * 7 6 4 33 33 H 1.09004 * 109.47030 * 300.00286 * 8 7 6 34 34 H 1.09002 * 109.47237 * 59.99691 * 8 7 6 35 35 H 1.08998 * 109.46822 * 299.99799 * 9 8 7 36 36 H 1.08997 * 109.47357 * 60.00308 * 9 8 7 37 37 H 0.97000 * 120.00018 * 179.97438 * 13 12 10 38 38 H 1.08993 * 109.47167 * 54.18847 * 21 19 18 39 39 H 1.09002 * 109.46564 * 174.18979 * 21 19 18 40 40 H 1.08990 * 109.46910 * 294.18889 * 21 19 18 41 41 H 1.09007 * 110.70659 * 263.90198 * 22 19 18 42 42 H 1.08995 * 110.85815 * 140.73423 * 22 19 18 43 43 H 1.08998 * 110.99621 * 206.25771 * 23 22 19 44 44 H 1.09001 * 111.02332 * 82.45234 * 23 22 19 45 45 H 1.09002 * 109.47201 * 87.54529 * 26 24 18 46 46 H 1.08996 * 109.47094 * 207.55244 * 26 24 18 47 47 H 1.08997 * 109.46976 * 327.55084 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 3.1806 -1.0972 1.2810 6 7 1.2054 -0.9159 2.2747 7 6 1.6936 -1.6070 3.4707 8 6 0.5639 -1.7092 4.4975 9 6 1.0739 -2.4304 5.7467 10 6 -0.0386 -2.5305 6.7584 11 1 -1.0123 -2.1211 6.5326 12 6 0.1861 -3.1457 7.9715 13 7 1.3712 -3.6456 8.2458 14 14 -1.1932 -3.2704 9.2252 15 1 -2.4188 -2.6356 8.6775 16 1 -1.4654 -4.7000 9.5209 17 1 -0.7914 -2.5744 10.4740 18 7 2.0197 -0.6925 -1.1994 19 6 1.8469 0.1449 -2.4006 20 1 1.1659 -0.3430 -3.0979 21 6 1.2965 1.5164 -2.0042 22 6 3.2375 0.3051 -3.0502 23 6 4.0223 -0.9154 -2.5014 24 6 3.4519 -1.0346 -1.0661 25 1 3.9499 -0.3300 -0.4001 26 6 3.6118 -2.4637 -0.5437 27 1 -0.3633 0.1693 -1.0136 28 1 -0.3633 -0.9625 0.3601 29 1 -0.3634 0.7931 0.6534 30 1 0.2869 -0.6069 2.2342 31 1 2.0299 -2.6079 3.2001 32 1 2.5252 -1.0478 3.8995 33 1 0.2272 -0.7084 4.7681 34 1 -0.2675 -2.2685 4.0685 35 1 1.4108 -3.4311 5.4764 36 1 1.9051 -1.8707 6.1756 37 1 1.5294 -4.0781 9.0995 38 1 1.9400 1.9605 -1.2449 39 1 1.2685 2.1637 -2.8807 40 1 0.2889 1.4018 -1.6048 41 1 3.7052 1.2377 -2.7345 42 1 3.1656 0.2601 -4.1369 43 1 5.0933 -0.7137 -2.4804 44 1 3.8073 -1.8121 -3.0826 45 1 3.6118 -3.1594 -1.3829 46 1 4.5532 -2.5490 -0.0010 47 1 2.7842 -2.7009 0.1248 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170902479.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:52 Heat of formation + Delta-G solvation = -24.372333 kcal Electronic energy + Delta-G solvation = -23166.007973 eV Core-core repulsion = 19963.116994 eV Total energy + Delta-G solvation = -3202.890979 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.91277 -38.56268 -35.52833 -34.45150 -33.15517 -32.26422 -31.15972 -28.99597 -28.25885 -26.63043 -24.45663 -24.00355 -22.83215 -20.94887 -20.54407 -20.29544 -19.13534 -17.26829 -16.53553 -16.31773 -15.73219 -15.49787 -15.02789 -14.55417 -14.44101 -14.03824 -13.76097 -13.58047 -13.27244 -13.19225 -12.78201 -12.32185 -12.26039 -12.09449 -11.90730 -11.82801 -11.50995 -11.43368 -11.32001 -11.21523 -10.92428 -10.80951 -10.75583 -10.69858 -10.56246 -10.45017 -9.85250 -9.62484 -9.21055 -9.06357 -8.65973 -8.38756 -8.37840 -6.02195 -4.05247 2.71047 3.29696 3.36575 3.38415 3.41715 3.85817 4.43231 4.43985 4.49854 4.64359 4.74126 4.89263 4.92036 5.08912 5.14551 5.25949 5.32901 5.33728 5.41191 5.50763 5.59852 5.61617 5.72277 5.74428 5.78632 5.79455 5.83333 5.94344 6.04733 6.11713 6.15549 6.17950 6.27306 6.50019 6.60456 6.63774 6.84114 6.96314 6.98915 7.01887 7.63536 7.74291 7.76036 7.96729 8.37157 8.43070 9.01705 9.59106 11.09149 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036482 B = 0.002953 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.310873 B = 9480.690038 C =10032.020172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.050 3.950 3 H 0.083 0.917 4 C 0.508 3.492 5 O -0.532 6.532 6 N -0.722 5.722 7 C 0.117 3.883 8 C -0.121 4.121 9 C 0.024 3.976 10 C -0.521 4.521 11 H 0.056 0.944 12 C 0.056 3.944 13 N -0.894 5.894 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 N -0.508 5.508 19 C 0.071 3.929 20 H 0.086 0.914 21 C -0.187 4.187 22 C -0.139 4.139 23 C -0.131 4.131 24 C 0.078 3.922 25 H 0.073 0.927 26 C -0.107 4.107 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.398 0.602 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.019 0.981 36 H 0.018 0.982 37 H 0.260 0.740 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.033 0.967 46 H 0.054 0.946 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.534 9.855 -23.246 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.062 4.062 3 H 0.101 0.899 4 C 0.293 3.707 5 O -0.409 6.409 6 N -0.374 5.374 7 C -0.006 4.006 8 C -0.159 4.159 9 C -0.014 4.014 10 C -0.560 4.560 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.533 5.533 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 N -0.234 5.234 19 C -0.037 4.037 20 H 0.104 0.896 21 C -0.244 4.244 22 C -0.177 4.177 23 C -0.169 4.169 24 C -0.029 4.029 25 H 0.091 0.909 26 C -0.165 4.165 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.233 0.767 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.052 0.948 46 H 0.073 0.927 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.166 9.020 -23.087 24.814 hybrid contribution -0.692 0.787 0.900 1.381 sum 0.474 9.807 -22.187 24.262 Atomic orbital electron populations 1.22169 0.93094 1.02800 1.03377 1.21931 0.96981 0.97552 0.89698 0.89944 1.20400 0.86137 0.79611 0.84528 1.90743 1.18323 1.50727 1.81066 1.46316 1.14955 1.59334 1.16814 1.21626 0.98318 0.96593 0.84039 1.21883 0.96294 1.01069 0.96618 1.19029 0.96667 0.95426 0.90250 1.21245 0.97378 1.37179 1.00181 0.92600 1.25030 0.95588 0.95492 0.98380 1.69975 1.21419 1.38516 1.23381 0.86532 0.82304 0.77750 0.81381 1.19749 1.20985 1.21010 1.63823 1.19078 1.39974 1.00572 1.22395 0.96817 0.92133 0.92365 0.89569 1.22708 1.02642 0.97087 1.01966 1.22866 0.95592 0.98749 1.00514 1.22908 0.99440 0.98041 0.96554 1.22691 0.86440 0.98998 0.94810 0.90900 1.21650 1.02272 0.93506 0.99042 0.90344 0.91291 0.91651 0.76655 0.91818 0.91912 0.92815 0.92742 0.96286 0.96330 0.92983 0.92139 0.92165 0.90349 0.91556 0.91011 0.91106 0.90893 0.94757 0.92721 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 7.34 37.16 0.27 -1.08 16 2 C 0.05 0.55 2.11 -68.86 -0.15 0.40 16 3 H 0.08 0.86 5.41 -51.93 -0.28 0.57 16 4 C 0.51 7.34 6.47 -10.98 -0.07 7.26 16 5 O -0.53 -9.19 10.61 5.56 0.06 -9.13 16 6 N -0.72 -10.28 5.27 -60.29 -0.32 -10.60 16 7 C 0.12 2.05 5.67 -4.04 -0.02 2.03 16 8 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 11 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.89 -26.87 13.29 55.43 0.74 -26.14 16 14 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 15 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 18 N -0.51 -5.71 4.66 -209.04 -0.97 -6.69 16 19 C 0.07 0.62 3.59 -66.72 -0.24 0.38 16 20 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 21 C -0.19 -1.34 7.72 37.16 0.29 -1.06 16 22 C -0.14 -1.14 6.47 -24.91 -0.16 -1.30 16 23 C -0.13 -1.28 6.48 -24.59 -0.16 -1.44 16 24 C 0.08 0.96 2.33 -66.18 -0.15 0.81 16 25 H 0.07 1.04 6.38 -51.93 -0.33 0.71 16 26 C -0.11 -1.50 7.99 37.16 0.30 -1.20 16 27 H 0.08 0.60 5.48 -51.93 -0.28 0.31 16 28 H 0.07 0.66 7.26 -51.93 -0.38 0.28 16 29 H 0.06 0.46 8.03 -51.93 -0.42 0.04 16 30 H 0.40 4.71 6.48 -40.82 -0.26 4.44 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.06 0.48 6.14 -51.93 -0.32 0.16 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.52 4.67 -51.93 -0.24 0.28 16 41 H 0.07 0.53 7.85 -51.93 -0.41 0.13 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.70 7.71 -51.93 -0.40 0.30 16 45 H 0.03 0.43 7.58 -51.93 -0.39 0.04 16 46 H 0.05 0.80 7.97 -51.93 -0.41 0.39 16 47 H 0.06 1.01 6.13 -51.93 -0.32 0.69 16 LS Contribution 350.23 15.07 5.28 5.28 Total: -1.00 -31.00 350.23 -9.25 -40.25 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -8.22 Total: 1.15 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -0.79 Total: -10.60 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: -0.56 Total: -43.42 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.06 Total: -9.13 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.00 -9.25 -40.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170902479.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.877 kcal (2) G-P(sol) polarization free energy of solvation -31.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds