Wall clock time and date at job start Tue Mar 31 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47452 * 2 1 4 4 C 1.53002 * 109.46972 * 239.99540 * 2 1 3 5 5 C 1.52996 * 109.46972 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47131 * 60.00459 * 5 4 2 7 7 C 1.52999 * 109.46991 * 299.99311 * 6 5 4 8 8 H 1.08993 * 109.47839 * 300.00447 * 7 6 5 9 9 N 1.46504 * 109.47050 * 179.97438 * 7 6 5 10 10 C 1.34777 * 119.99637 * 85.00741 * 9 7 6 11 11 O 1.21593 * 119.99949 * 359.97438 * 10 9 7 12 12 N 1.34771 * 120.00261 * 180.02562 * 10 9 7 13 13 C 1.46500 * 120.00657 * 179.97438 * 12 10 9 14 14 C 1.52993 * 109.47586 * 180.02562 * 13 12 10 15 15 C 1.52995 * 109.47237 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.47309 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99618 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00148 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99831 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00018 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47150 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47411 * 119.99792 * 20 18 16 23 23 H 1.48501 * 109.47247 * 239.99790 * 20 18 16 24 24 C 1.52997 * 109.47131 * 120.00000 * 2 1 3 25 25 H 1.09001 * 109.47289 * 299.99950 * 24 2 1 26 26 C 1.52997 * 109.47232 * 59.99874 * 24 2 1 27 27 H 1.09001 * 109.46997 * 300.00426 * 1 2 3 28 28 H 1.09000 * 109.47054 * 60.00160 * 1 2 3 29 29 H 1.09000 * 109.47380 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00487 * 4 2 1 31 31 H 1.09000 * 109.46986 * 60.00258 * 4 2 1 32 32 H 1.09001 * 109.46993 * 180.02562 * 5 4 2 33 33 H 1.09000 * 109.47380 * 299.99696 * 5 4 2 34 34 H 1.09002 * 109.47153 * 179.97438 * 6 5 4 35 35 H 1.08993 * 109.47194 * 60.00154 * 6 5 4 36 36 H 0.96998 * 120.00034 * 265.00623 * 9 7 6 37 37 H 0.97006 * 119.99693 * 0.02562 * 12 10 9 38 38 H 1.09009 * 109.46783 * 300.00045 * 13 12 10 39 39 H 1.09003 * 109.46663 * 59.99507 * 13 12 10 40 40 H 1.09009 * 109.46963 * 299.99771 * 14 13 12 41 41 H 1.08996 * 109.47193 * 59.99462 * 14 13 12 42 42 H 1.09002 * 109.47201 * 299.99795 * 15 14 13 43 43 H 1.08996 * 109.47595 * 59.99553 * 15 14 13 44 44 H 0.97001 * 119.99782 * 179.97438 * 19 18 16 45 45 H 1.09000 * 109.47140 * 180.02562 * 26 24 2 46 46 H 1.09001 * 109.47230 * 299.99295 * 26 24 2 47 47 H 1.09001 * 109.47375 * 60.00133 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5699 -0.7208 -1.2495 6 6 4.0804 -1.4417 -0.0003 7 6 3.5705 -0.7203 1.2489 8 1 3.9335 0.3074 1.2487 9 7 4.0589 -1.4109 2.4451 10 6 5.2809 -1.1250 2.9365 11 8 5.9781 -0.2943 2.3868 12 7 5.7304 -1.7606 4.0366 13 6 7.0589 -1.4503 4.5706 14 6 7.3220 -2.3047 5.8121 15 6 8.7091 -1.9802 6.3700 16 6 8.9680 -2.8213 7.5934 17 1 8.2180 -3.5174 7.9386 18 6 10.1624 -2.7022 8.2718 19 7 11.0759 -1.8548 7.8511 20 14 10.4835 -3.7453 9.7877 21 1 9.3069 -4.6124 10.0503 22 1 11.6822 -4.5920 9.5612 23 1 10.7165 -2.8604 10.9573 24 6 2.0400 -0.7212 1.2492 25 1 1.6766 -0.2074 2.1392 26 6 1.5300 -2.1637 1.2493 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6766 -1.7490 -1.2492 31 1 1.6766 -0.2076 -2.1392 32 1 3.9332 -1.2343 -2.1397 33 1 3.9329 0.3070 -1.2499 34 1 5.1704 -1.4417 -0.0008 35 1 3.7175 -2.4694 -0.0001 36 1 3.5028 -2.0739 2.8834 37 1 5.1746 -2.4242 4.4745 38 1 7.8139 -1.6665 3.8145 39 1 7.1052 -0.3948 4.8388 40 1 6.5670 -2.0890 6.5683 41 1 7.2758 -3.3600 5.5434 42 1 9.4643 -2.1956 5.6141 43 1 8.7549 -0.9248 6.6388 44 1 11.9160 -1.7707 8.3286 45 1 1.8929 -2.6774 2.1395 46 1 0.4399 -2.1637 1.2494 47 1 1.8933 -2.6776 0.3593 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171412040.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:28 Heat of formation + Delta-G solvation = -74.545260 kcal Electronic energy + Delta-G solvation = -22334.533440 eV Core-core repulsion = 19129.466799 eV Total energy + Delta-G solvation = -3205.066640 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.52968 -38.99887 -35.47967 -34.41195 -33.28812 -32.83184 -31.38122 -30.29012 -27.64544 -26.48063 -25.95961 -23.28263 -22.27371 -21.64971 -20.67286 -20.19127 -18.92006 -17.96276 -16.60115 -16.14459 -15.66175 -15.41447 -15.18993 -14.67419 -14.50089 -14.29650 -14.15166 -13.73955 -13.63418 -13.22477 -12.88513 -12.55764 -12.29528 -12.26577 -11.89826 -11.80648 -11.77503 -11.58467 -11.37666 -10.99856 -10.90917 -10.72151 -10.68108 -10.55258 -10.39189 -10.37103 -9.99851 -9.83695 -9.41524 -9.09337 -9.08393 -8.54257 -8.36141 -6.00558 -4.03471 2.87786 3.30662 3.38096 3.41643 3.43928 4.30794 4.34725 4.38227 4.45655 4.55604 4.80826 4.86018 4.98512 5.02599 5.15125 5.18650 5.31117 5.35239 5.37311 5.42957 5.49510 5.59192 5.64444 5.69550 5.73239 5.80670 5.82205 5.85055 5.92940 6.00133 6.06168 6.12210 6.22022 6.28263 6.58095 6.59486 6.65620 6.85873 7.05620 7.15000 7.65971 7.78848 7.98741 8.22571 8.39734 8.83357 9.03529 9.60592 11.10805 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.044555 B = 0.002404 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.281593 B =11646.588382 C =11945.687059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.072 0.928 4 C -0.117 4.117 5 C -0.117 4.117 6 C -0.132 4.132 7 C 0.171 3.829 8 H 0.086 0.914 9 N -0.748 5.748 10 C 0.699 3.301 11 O -0.593 6.593 12 N -0.743 5.743 13 C 0.135 3.865 14 C -0.120 4.120 15 C 0.023 3.977 16 C -0.521 4.521 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.093 4.093 25 H 0.075 0.925 26 C -0.154 4.154 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.392 0.608 37 H 0.393 0.607 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.260 0.740 45 H 0.052 0.948 46 H 0.060 0.940 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.004 0.620 -17.361 28.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 H 0.091 0.909 4 C -0.154 4.154 5 C -0.155 4.155 6 C -0.171 4.171 7 C 0.065 3.935 8 H 0.104 0.896 9 N -0.404 5.404 10 C 0.399 3.601 11 O -0.472 6.472 12 N -0.397 5.397 13 C 0.012 3.988 14 C -0.158 4.158 15 C -0.014 4.014 16 C -0.559 4.559 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.112 4.112 25 H 0.093 0.907 26 C -0.211 4.211 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.227 0.773 37 H 0.226 0.774 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.143 1.469 -17.806 28.452 hybrid contribution -0.178 -1.183 1.337 1.794 sum -22.321 0.286 -16.469 27.740 Atomic orbital electron populations 1.21878 0.95055 1.01975 1.01653 1.21089 0.95524 0.99551 0.94150 0.90930 1.21666 0.95662 1.00858 0.97246 1.21486 0.95303 1.01124 0.97585 1.21982 1.01527 0.99546 0.94039 1.20747 0.92332 0.97040 0.83360 0.89589 1.45287 1.17443 1.46214 1.31413 1.16055 0.81588 0.81629 0.80809 1.90910 1.57210 1.37049 1.61988 1.45396 1.20386 1.44633 1.29308 1.21490 0.81073 1.00073 0.96146 1.21882 1.01555 0.98144 0.94215 1.19034 0.89417 0.97277 0.95712 1.21244 1.01240 1.22388 1.11047 0.92618 1.25038 0.96255 0.95557 0.97706 1.69979 1.07118 1.36017 1.40154 0.86526 0.78161 0.80259 0.82976 1.19782 1.21010 1.21013 1.21397 0.94082 0.97066 0.98678 0.90663 1.22012 1.01196 0.95904 1.02013 0.92694 0.92710 0.92316 0.91608 0.92040 0.91848 0.91753 0.91286 0.91715 0.77338 0.77441 0.92038 0.92027 0.92813 0.92812 0.96243 0.96245 0.92994 0.92938 0.92140 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 8.84 37.16 0.33 -0.50 16 2 C -0.08 -0.56 2.49 -90.62 -0.23 -0.79 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.12 -0.76 4.93 -26.73 -0.13 -0.89 16 5 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 6 C -0.13 -1.30 5.22 -26.73 -0.14 -1.44 16 7 C 0.17 1.74 2.15 -67.90 -0.15 1.60 16 8 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 9 N -0.75 -8.37 5.00 -58.65 -0.29 -8.66 16 10 C 0.70 10.95 8.53 -86.92 -0.74 10.21 16 11 O -0.59 -11.85 16.01 5.28 0.08 -11.77 16 12 N -0.74 -11.09 5.56 -65.22 -0.36 -11.46 16 13 C 0.14 2.47 5.67 -4.05 -0.02 2.45 16 14 C -0.12 -2.38 5.27 -26.74 -0.14 -2.52 16 15 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 16 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 20 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 C -0.09 -0.69 2.41 -90.59 -0.22 -0.91 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 C -0.15 -0.96 7.97 37.16 0.30 -0.67 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.31 6.43 -51.93 -0.33 -0.03 16 30 H 0.07 0.41 6.43 -51.93 -0.33 0.08 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 36 H 0.39 3.36 6.88 -40.82 -0.28 3.08 16 37 H 0.39 4.68 8.49 -40.82 -0.35 4.34 16 38 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.05 1.03 8.14 -51.92 -0.42 0.60 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.05 0.31 6.51 -51.93 -0.34 -0.03 16 46 H 0.06 0.33 6.43 -51.93 -0.33 0.00 16 47 H 0.06 0.42 4.81 -51.93 -0.25 0.17 16 LS Contribution 359.68 15.07 5.42 5.42 Total: -1.00 -32.62 359.68 -9.69 -42.31 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -8.40 Total: 1.42 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -1.85 Total: -7.56 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.08 Total: -46.40 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.08 Total: -11.77 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.62 -9.69 -42.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171412040.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.240 kcal (2) G-P(sol) polarization free energy of solvation -32.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds