Wall clock time and date at job start Tue Mar 31 2020 06:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47452 * 2 1 4 4 C 1.53002 * 109.46972 * 239.99540 * 2 1 3 5 5 C 1.52996 * 109.46972 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47131 * 60.00459 * 5 4 2 7 7 C 1.52999 * 109.46991 * 299.99311 * 6 5 4 8 8 H 1.08993 * 109.47839 * 300.00447 * 7 6 5 9 9 N 1.46504 * 109.47050 * 179.97438 * 7 6 5 10 10 C 1.34777 * 119.99637 * 85.00741 * 9 7 6 11 11 O 1.21593 * 119.99949 * 359.97438 * 10 9 7 12 12 N 1.34771 * 120.00261 * 180.02562 * 10 9 7 13 13 C 1.46500 * 120.00657 * 179.97438 * 12 10 9 14 14 C 1.52993 * 109.47586 * 180.02562 * 13 12 10 15 15 C 1.52995 * 109.47237 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.47309 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99618 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00148 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99831 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00018 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47150 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47411 * 119.99792 * 20 18 16 23 23 H 1.48501 * 109.47247 * 239.99790 * 20 18 16 24 24 C 1.52997 * 109.47131 * 120.00000 * 2 1 3 25 25 H 1.09001 * 109.47289 * 299.99950 * 24 2 1 26 26 C 1.52997 * 109.47232 * 59.99874 * 24 2 1 27 27 H 1.09001 * 109.46997 * 300.00426 * 1 2 3 28 28 H 1.09000 * 109.47054 * 60.00160 * 1 2 3 29 29 H 1.09000 * 109.47380 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00487 * 4 2 1 31 31 H 1.09000 * 109.46986 * 60.00258 * 4 2 1 32 32 H 1.09001 * 109.46993 * 180.02562 * 5 4 2 33 33 H 1.09000 * 109.47380 * 299.99696 * 5 4 2 34 34 H 1.09002 * 109.47153 * 179.97438 * 6 5 4 35 35 H 1.08993 * 109.47194 * 60.00154 * 6 5 4 36 36 H 0.96998 * 120.00034 * 265.00623 * 9 7 6 37 37 H 0.97006 * 119.99693 * 0.02562 * 12 10 9 38 38 H 1.09009 * 109.46783 * 300.00045 * 13 12 10 39 39 H 1.09003 * 109.46663 * 59.99507 * 13 12 10 40 40 H 1.09009 * 109.46963 * 299.99771 * 14 13 12 41 41 H 1.08996 * 109.47193 * 59.99462 * 14 13 12 42 42 H 1.09002 * 109.47201 * 299.99795 * 15 14 13 43 43 H 1.08996 * 109.47595 * 59.99553 * 15 14 13 44 44 H 0.97001 * 119.99782 * 179.97438 * 19 18 16 45 45 H 1.09000 * 109.47140 * 180.02562 * 26 24 2 46 46 H 1.09001 * 109.47230 * 299.99295 * 26 24 2 47 47 H 1.09001 * 109.47375 * 60.00133 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5699 -0.7208 -1.2495 6 6 4.0804 -1.4417 -0.0003 7 6 3.5705 -0.7203 1.2489 8 1 3.9335 0.3074 1.2487 9 7 4.0589 -1.4109 2.4451 10 6 5.2809 -1.1250 2.9365 11 8 5.9781 -0.2943 2.3868 12 7 5.7304 -1.7606 4.0366 13 6 7.0589 -1.4503 4.5706 14 6 7.3220 -2.3047 5.8121 15 6 8.7091 -1.9802 6.3700 16 6 8.9680 -2.8213 7.5934 17 1 8.2180 -3.5174 7.9386 18 6 10.1624 -2.7022 8.2718 19 7 11.0759 -1.8548 7.8511 20 14 10.4835 -3.7453 9.7877 21 1 9.3069 -4.6124 10.0503 22 1 11.6822 -4.5920 9.5612 23 1 10.7165 -2.8604 10.9573 24 6 2.0400 -0.7212 1.2492 25 1 1.6766 -0.2074 2.1392 26 6 1.5300 -2.1637 1.2493 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6766 -1.7490 -1.2492 31 1 1.6766 -0.2076 -2.1392 32 1 3.9332 -1.2343 -2.1397 33 1 3.9329 0.3070 -1.2499 34 1 5.1704 -1.4417 -0.0008 35 1 3.7175 -2.4694 -0.0001 36 1 3.5028 -2.0739 2.8834 37 1 5.1746 -2.4242 4.4745 38 1 7.8139 -1.6665 3.8145 39 1 7.1052 -0.3948 4.8388 40 1 6.5670 -2.0890 6.5683 41 1 7.2758 -3.3600 5.5434 42 1 9.4643 -2.1956 5.6141 43 1 8.7549 -0.9248 6.6388 44 1 11.9160 -1.7707 8.3286 45 1 1.8929 -2.6774 2.1395 46 1 0.4399 -2.1637 1.2494 47 1 1.8933 -2.6776 0.3593 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171412040.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:27 Heat of formation + Delta-G solvation = -95.289698 kcal Electronic energy + Delta-G solvation = -22335.432986 eV Core-core repulsion = 19129.466799 eV Total energy + Delta-G solvation = -3205.966186 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.50016 -40.00499 -37.01364 -35.48064 -35.17543 -33.54112 -33.00616 -31.25121 -28.69471 -27.88920 -26.60024 -25.01426 -23.06935 -22.57387 -22.29497 -21.41361 -19.79678 -18.96766 -18.52299 -17.37934 -16.79289 -16.56091 -16.38325 -15.97375 -15.67509 -15.55902 -15.18091 -14.87429 -14.47000 -14.26511 -13.93654 -13.72170 -13.53883 -13.42348 -13.18085 -12.78592 -12.76860 -12.54529 -12.50109 -12.33446 -12.28017 -12.11411 -11.67436 -11.65744 -11.56530 -11.39041 -11.21469 -11.13769 -11.03163 -10.97462 -10.56107 -10.31103 -9.73519 -8.19396 -6.30901 1.41842 1.42136 1.55368 1.72085 2.15891 2.42124 3.14372 3.31336 3.66725 3.74236 3.90843 4.14296 4.17457 4.20542 4.23492 4.36411 4.41622 4.47923 4.56093 4.58464 4.74263 4.76859 4.85135 4.94357 4.95880 5.00880 5.05189 5.06418 5.14350 5.15639 5.17453 5.24028 5.31263 5.39667 5.45271 5.47456 5.50983 5.55009 5.62133 5.69910 5.71126 5.84517 6.04185 6.22830 6.86651 7.13528 7.38663 7.60668 8.93066 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.044555 B = 0.002404 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.281593 B =11646.588382 C =11945.687059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 H 0.061 0.939 4 C -0.111 4.111 5 C -0.115 4.115 6 C -0.127 4.127 7 C 0.168 3.832 8 H 0.056 0.944 9 N -0.727 5.727 10 C 0.696 3.304 11 O -0.641 6.641 12 N -0.731 5.731 13 C 0.150 3.850 14 C -0.099 4.099 15 C 0.023 3.977 16 C -0.539 4.539 17 H 0.067 0.933 18 C -0.006 4.006 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.258 1.258 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.085 4.085 25 H 0.074 0.926 26 C -0.153 4.153 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.034 0.966 35 H 0.079 0.921 36 H 0.409 0.591 37 H 0.411 0.589 38 H 0.044 0.956 39 H 0.045 0.955 40 H 0.068 0.932 41 H 0.068 0.932 42 H -0.008 1.008 43 H -0.008 1.008 44 H 0.263 0.737 45 H 0.056 0.944 46 H 0.074 0.926 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.746 -1.276 -17.085 30.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.103 4.103 3 H 0.080 0.920 4 C -0.148 4.148 5 C -0.154 4.154 6 C -0.166 4.166 7 C 0.063 3.937 8 H 0.074 0.926 9 N -0.383 5.383 10 C 0.396 3.604 11 O -0.523 6.523 12 N -0.387 5.387 13 C 0.025 3.975 14 C -0.137 4.137 15 C -0.015 4.015 16 C -0.577 4.577 17 H 0.085 0.915 18 C -0.203 4.203 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.181 1.181 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.104 4.104 25 H 0.093 0.907 26 C -0.210 4.210 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.097 0.903 36 H 0.247 0.753 37 H 0.248 0.752 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.010 0.990 43 H 0.010 0.990 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.093 0.907 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -24.960 -0.468 -17.531 30.505 hybrid contribution 0.678 -0.545 1.196 1.479 sum -24.283 -1.014 -16.335 29.283 Atomic orbital electron populations 1.21844 0.93661 1.02657 1.01982 1.21094 0.96578 0.98871 0.93798 0.92036 1.21638 0.93998 1.01636 0.97574 1.21481 0.96785 1.00214 0.96880 1.21919 0.99332 1.00590 0.94747 1.20855 0.94466 0.95342 0.83012 0.92618 1.45137 1.15891 1.45982 1.31320 1.16233 0.82442 0.81134 0.80630 1.90884 1.58868 1.39176 1.63338 1.45035 1.19356 1.45023 1.29266 1.21055 0.82471 0.98778 0.95146 1.21579 0.98262 0.99074 0.94806 1.18951 0.92243 0.95426 0.94876 1.21705 1.01658 1.22642 1.11672 0.91465 1.26051 0.96070 0.96879 1.01298 1.70125 1.07745 1.37843 1.41904 0.85342 0.78439 0.78451 0.78449 1.18134 1.20586 1.20587 1.21342 0.91377 0.98454 0.99187 0.90734 1.22021 1.02131 0.94504 1.02337 0.92700 0.92145 0.91400 0.90495 0.90985 0.91077 0.92972 0.94755 0.90257 0.75315 0.75244 0.93722 0.93690 0.91326 0.91327 0.98996 0.98992 0.92822 0.92458 0.90694 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.84 71.98 0.64 -0.61 16 2 C -0.08 -0.99 2.49 -10.79 -0.03 -1.02 16 3 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.11 -1.23 4.93 30.59 0.15 -1.08 16 5 C -0.12 -1.79 5.92 30.59 0.18 -1.61 16 6 C -0.13 -2.48 5.22 30.59 0.16 -2.32 16 7 C 0.17 3.41 2.15 45.01 0.10 3.51 16 8 H 0.06 1.49 7.58 -2.39 -0.02 1.47 16 9 N -0.73 -15.68 5.00 -457.72 -2.29 -17.97 16 10 C 0.70 21.87 8.53 179.06 1.53 23.40 16 11 O -0.64 -26.65 16.01 -4.01 -0.06 -26.71 16 12 N -0.73 -21.30 5.56 -478.53 -2.66 -23.96 16 13 C 0.15 5.57 5.67 86.38 0.49 6.06 16 14 C -0.10 -3.89 5.27 30.59 0.16 -3.73 16 15 C 0.02 1.20 4.97 29.85 0.15 1.35 16 16 C -0.54 -30.30 9.11 25.60 0.23 -30.06 16 17 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 18 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 19 N -0.94 -57.73 13.29 21.45 0.28 -57.44 16 20 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 21 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 C -0.08 -1.12 2.41 -10.78 -0.03 -1.14 16 25 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 26 C -0.15 -1.45 7.97 71.98 0.57 -0.87 16 27 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.07 0.48 6.43 -2.39 -0.02 0.46 16 30 H 0.08 0.72 6.43 -2.39 -0.02 0.70 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.08 1.30 6.43 -2.39 -0.02 1.29 16 36 H 0.41 6.10 6.88 -92.71 -0.64 5.47 16 37 H 0.41 8.90 8.49 -92.70 -0.79 8.12 16 38 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 39 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 41 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 42 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 43 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 44 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 45 H 0.06 0.49 6.51 -2.39 -0.02 0.48 16 46 H 0.07 0.54 6.43 -2.39 -0.02 0.53 16 47 H 0.07 0.64 4.81 -2.39 -0.01 0.62 16 Total: -1.00 -72.54 359.68 1.59 -70.95 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -0.48 Total: 17.03 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 4.77 Total: -7.99 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -4.67 Total: -99.37 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.06 Total: -26.71 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -72.54 1.59 -70.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171412040.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.336 kcal (2) G-P(sol) polarization free energy of solvation -72.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds