Wall clock time and date at job start Tue Mar 31 2020 06:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47089 * 2 1 4 4 C 1.53001 * 109.47047 * 240.00135 * 2 1 3 5 5 C 1.53006 * 109.47065 * 299.99774 * 4 2 1 6 6 C 1.53003 * 109.47054 * 300.00086 * 5 4 2 7 7 C 1.53008 * 109.46822 * 59.99860 * 6 5 4 8 8 H 1.09002 * 109.46916 * 59.99986 * 7 6 5 9 9 N 1.46500 * 109.46837 * 179.97438 * 7 6 5 10 10 C 1.34773 * 120.00431 * 275.00470 * 9 7 6 11 11 O 1.21593 * 119.99894 * 359.97438 * 10 9 7 12 12 N 1.34777 * 120.00097 * 179.72742 * 10 9 7 13 13 C 1.46504 * 119.99854 * 180.27545 * 12 10 9 14 14 C 1.53004 * 109.46928 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.46988 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.46983 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99624 * 359.97438 * 16 15 14 18 18 C 1.37872 * 119.99634 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00657 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99703 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47214 * 90.00059 * 20 18 16 22 22 H 1.48501 * 109.47474 * 210.00166 * 20 18 16 23 23 H 1.48500 * 109.47089 * 330.00544 * 20 18 16 24 24 C 1.52995 * 109.47295 * 299.99603 * 7 6 5 25 25 H 1.08994 * 109.47294 * 300.00311 * 24 7 6 26 26 C 1.52997 * 109.47067 * 179.97438 * 24 7 6 27 27 H 1.08995 * 109.47161 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47174 * 300.00512 * 1 2 3 29 29 H 1.09003 * 109.47088 * 60.00103 * 1 2 3 30 30 H 1.09002 * 109.46839 * 179.97438 * 4 2 1 31 31 H 1.08998 * 109.47334 * 60.00412 * 4 2 1 32 32 H 1.09001 * 109.47081 * 180.02562 * 5 4 2 33 33 H 1.08998 * 109.46269 * 60.00177 * 5 4 2 34 34 H 1.08994 * 109.47257 * 299.99862 * 6 5 4 35 35 H 1.08991 * 109.46698 * 179.97438 * 6 5 4 36 36 H 0.97000 * 119.99456 * 95.00032 * 9 7 6 37 37 H 0.97000 * 119.99736 * 0.26819 * 12 10 9 38 38 H 1.08998 * 109.46968 * 299.99782 * 13 12 10 39 39 H 1.08997 * 109.47198 * 59.99605 * 13 12 10 40 40 H 1.09007 * 109.46621 * 299.99773 * 14 13 12 41 41 H 1.08997 * 109.46991 * 59.99522 * 14 13 12 42 42 H 1.08998 * 109.46983 * 299.99930 * 15 14 13 43 43 H 1.08997 * 109.47123 * 59.99717 * 15 14 13 44 44 H 0.96990 * 120.00229 * 180.02562 * 19 18 16 45 45 H 1.09003 * 109.46891 * 60.00368 * 26 24 7 46 46 H 1.09002 * 109.47193 * 180.02562 * 26 24 7 47 47 H 1.08994 * 109.47479 * 300.00396 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5299 -2.1638 -1.2493 6 6 2.0400 -2.8850 0.0000 7 6 1.5300 -2.1637 1.2493 8 1 0.4399 -2.1637 1.2492 9 7 2.0178 -2.8546 2.4454 10 6 1.3407 -3.9113 2.9367 11 8 0.3245 -4.2909 2.3873 12 7 1.7926 -4.5503 4.0339 13 6 1.0598 -5.7026 4.5643 14 6 1.7801 -6.2388 5.8032 15 6 1.0144 -7.4419 6.3575 16 6 1.7243 -7.9704 7.5773 17 1 2.6310 -7.4959 7.9223 18 6 1.2160 -9.0596 8.2527 19 7 0.1121 -9.6378 7.8323 20 14 2.0955 -9.7143 9.7651 21 1 1.5720 -9.0325 10.9761 22 1 1.8612 -11.1762 9.8800 23 1 3.5524 -9.4546 9.6418 24 6 2.0400 -0.7212 1.2493 25 1 3.1299 -0.7212 1.2493 26 6 1.5295 0.0002 2.4981 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 3.1299 -0.7208 -1.2495 31 1 1.6767 -0.2074 -2.1392 32 1 1.8936 -2.6777 -2.1390 33 1 0.4400 -2.1637 -1.2493 34 1 3.1299 -2.8850 0.0000 35 1 1.6763 -3.9125 0.0002 36 1 2.8283 -2.5515 2.8838 37 1 2.6031 -4.2472 4.4723 38 1 0.0491 -5.3972 4.8350 39 1 1.0123 -6.4837 3.8055 40 1 2.7907 -6.5444 5.5320 41 1 1.8279 -5.4579 6.5621 42 1 0.0040 -7.1359 6.6287 43 1 0.9662 -8.2229 5.5987 44 1 -0.2456 -10.4038 8.3077 45 1 1.8924 -0.5135 3.3884 46 1 1.8924 1.0280 2.4979 47 1 0.4395 0.0002 2.4977 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171412049.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:31 Heat of formation + Delta-G solvation = -75.135395 kcal Electronic energy + Delta-G solvation = -22471.323036 eV Core-core repulsion = 19266.230806 eV Total energy + Delta-G solvation = -3205.092230 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.51815 -38.97096 -35.45463 -34.35662 -33.25833 -33.03803 -31.34107 -30.08882 -27.67235 -26.57243 -25.79846 -23.29658 -22.21178 -21.52961 -20.74866 -20.32818 -19.05032 -17.68584 -16.82217 -16.23616 -15.51758 -15.26926 -15.11115 -14.51237 -14.42129 -14.33756 -14.13233 -13.80895 -13.54697 -13.40843 -12.77266 -12.55228 -12.26281 -12.24819 -11.83387 -11.78288 -11.74661 -11.58417 -11.40473 -10.98006 -10.89233 -10.72088 -10.67263 -10.58098 -10.54555 -10.19751 -9.98411 -9.83396 -9.41152 -9.10668 -9.07186 -8.53637 -8.35778 -6.00389 -4.03460 2.88255 3.31537 3.37867 3.40700 3.44431 4.28247 4.35623 4.41930 4.45949 4.59016 4.78837 4.91655 5.06331 5.09452 5.15136 5.16812 5.31699 5.35292 5.38322 5.53757 5.54613 5.64181 5.70610 5.73103 5.76456 5.80679 5.85006 5.92347 5.93352 5.98985 6.08466 6.12179 6.22084 6.29743 6.58178 6.60206 6.65612 6.86021 7.05610 7.15281 7.65706 7.78891 7.98768 8.23023 8.39731 8.83684 9.03345 9.60599 11.10949 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042335 B = 0.002479 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.234519 B =11292.378829 C =11484.323143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.081 4.081 3 H 0.072 0.928 4 C -0.116 4.116 5 C -0.119 4.119 6 C -0.131 4.131 7 C 0.168 3.832 8 H 0.091 0.909 9 N -0.747 5.747 10 C 0.700 3.300 11 O -0.593 6.593 12 N -0.743 5.743 13 C 0.136 3.864 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.093 4.093 25 H 0.073 0.927 26 C -0.149 4.149 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.392 0.608 37 H 0.393 0.607 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.261 0.739 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.682 21.677 -16.863 28.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.100 4.100 3 H 0.090 0.910 4 C -0.154 4.154 5 C -0.157 4.157 6 C -0.170 4.170 7 C 0.063 3.937 8 H 0.109 0.891 9 N -0.402 5.402 10 C 0.400 3.600 11 O -0.472 6.472 12 N -0.397 5.397 13 C 0.012 3.988 14 C -0.158 4.158 15 C -0.014 4.014 16 C -0.560 4.560 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.112 4.112 25 H 0.091 0.909 26 C -0.206 4.206 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.225 0.775 37 H 0.226 0.774 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.587 21.140 -17.313 27.708 hybrid contribution 1.256 -0.208 1.313 1.829 sum 5.842 20.933 -16.000 26.987 Atomic orbital electron populations 1.22041 0.95112 1.02609 1.01684 1.21073 0.96214 0.98920 0.93822 0.90974 1.21607 1.00517 0.95818 0.97414 1.21540 1.01366 0.95232 0.97544 1.21960 1.00654 1.00241 0.94140 1.20844 1.00037 0.89600 0.83203 0.89142 1.45215 1.30004 1.33502 1.31433 1.16035 0.83264 0.79912 0.80797 1.90909 1.26004 1.68304 1.61952 1.45396 1.30404 1.34337 1.29592 1.21487 0.95461 0.85630 0.96198 1.21885 0.99565 1.00099 0.94246 1.19027 0.95435 0.91207 0.95717 1.21207 1.09879 1.13580 1.11338 0.92673 1.25032 0.95058 0.96743 0.97664 1.69965 1.20758 1.22363 1.40209 0.86585 0.79976 0.78091 0.83272 1.20668 1.21208 1.19916 1.21400 1.00405 0.93946 0.95459 0.90876 1.21882 1.01851 0.99788 0.97116 0.91736 0.92328 0.92786 0.92006 0.91916 0.91925 0.91389 0.92100 0.91199 0.77483 0.77433 0.92039 0.92049 0.92817 0.92822 0.96256 0.96252 0.92931 0.92474 0.92691 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 8.15 37.15 0.30 -0.84 16 2 C -0.08 -0.55 2.72 -90.62 -0.25 -0.79 16 3 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.12 -0.77 5.45 -26.73 -0.15 -0.91 16 5 C -0.12 -0.96 5.65 -26.73 -0.15 -1.11 16 6 C -0.13 -1.30 5.50 -26.73 -0.15 -1.45 16 7 C 0.17 1.71 1.62 -67.93 -0.11 1.60 16 8 H 0.09 1.14 5.86 -51.93 -0.30 0.83 16 9 N -0.75 -8.22 4.39 -58.67 -0.26 -8.48 16 10 C 0.70 10.83 8.53 -86.92 -0.74 10.09 16 11 O -0.59 -11.75 16.01 5.28 0.08 -11.66 16 12 N -0.74 -10.99 5.56 -65.22 -0.36 -11.35 16 13 C 0.14 2.47 5.67 -4.04 -0.02 2.44 16 14 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 15 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 16 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 20 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 24 C -0.09 -0.69 2.07 -90.62 -0.19 -0.88 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 26 C -0.15 -1.12 8.68 37.16 0.32 -0.80 16 27 H 0.06 0.55 4.81 -51.93 -0.25 0.30 16 28 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.59 6.43 -51.93 -0.33 0.25 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.39 3.26 8.40 -40.82 -0.34 2.91 16 37 H 0.39 4.63 8.49 -40.82 -0.35 4.29 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.06 0.45 7.45 -51.93 -0.39 0.06 16 46 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.51 6.43 -51.93 -0.33 0.17 16 LS Contribution 361.42 15.07 5.45 5.45 Total: -1.00 -32.50 361.42 -9.71 -42.21 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -8.51 Total: 1.72 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -1.82 Total: -8.17 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.12 Total: -46.11 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.08 Total: -11.66 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.50 -9.71 -42.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171412049.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.926 kcal (2) G-P(sol) polarization free energy of solvation -32.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds