Wall clock time and date at job start Tue Mar 31 2020 06:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47089 * 2 1 4 4 C 1.53001 * 109.47047 * 240.00135 * 2 1 3 5 5 C 1.53006 * 109.47065 * 299.99774 * 4 2 1 6 6 C 1.53003 * 109.47054 * 300.00086 * 5 4 2 7 7 C 1.53008 * 109.46822 * 59.99860 * 6 5 4 8 8 H 1.09002 * 109.46916 * 59.99986 * 7 6 5 9 9 N 1.46500 * 109.46837 * 179.97438 * 7 6 5 10 10 C 1.34773 * 120.00431 * 275.00470 * 9 7 6 11 11 O 1.21593 * 119.99894 * 359.97438 * 10 9 7 12 12 N 1.34777 * 120.00097 * 179.72742 * 10 9 7 13 13 C 1.46504 * 119.99854 * 180.27545 * 12 10 9 14 14 C 1.53004 * 109.46928 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.46988 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.46983 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99624 * 359.97438 * 16 15 14 18 18 C 1.37872 * 119.99634 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00657 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99703 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47214 * 90.00059 * 20 18 16 22 22 H 1.48501 * 109.47474 * 210.00166 * 20 18 16 23 23 H 1.48500 * 109.47089 * 330.00544 * 20 18 16 24 24 C 1.52995 * 109.47295 * 299.99603 * 7 6 5 25 25 H 1.08994 * 109.47294 * 300.00311 * 24 7 6 26 26 C 1.52997 * 109.47067 * 179.97438 * 24 7 6 27 27 H 1.08995 * 109.47161 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47174 * 300.00512 * 1 2 3 29 29 H 1.09003 * 109.47088 * 60.00103 * 1 2 3 30 30 H 1.09002 * 109.46839 * 179.97438 * 4 2 1 31 31 H 1.08998 * 109.47334 * 60.00412 * 4 2 1 32 32 H 1.09001 * 109.47081 * 180.02562 * 5 4 2 33 33 H 1.08998 * 109.46269 * 60.00177 * 5 4 2 34 34 H 1.08994 * 109.47257 * 299.99862 * 6 5 4 35 35 H 1.08991 * 109.46698 * 179.97438 * 6 5 4 36 36 H 0.97000 * 119.99456 * 95.00032 * 9 7 6 37 37 H 0.97000 * 119.99736 * 0.26819 * 12 10 9 38 38 H 1.08998 * 109.46968 * 299.99782 * 13 12 10 39 39 H 1.08997 * 109.47198 * 59.99605 * 13 12 10 40 40 H 1.09007 * 109.46621 * 299.99773 * 14 13 12 41 41 H 1.08997 * 109.46991 * 59.99522 * 14 13 12 42 42 H 1.08998 * 109.46983 * 299.99930 * 15 14 13 43 43 H 1.08997 * 109.47123 * 59.99717 * 15 14 13 44 44 H 0.96990 * 120.00229 * 180.02562 * 19 18 16 45 45 H 1.09003 * 109.46891 * 60.00368 * 26 24 7 46 46 H 1.09002 * 109.47193 * 180.02562 * 26 24 7 47 47 H 1.08994 * 109.47479 * 300.00396 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5299 -2.1638 -1.2493 6 6 2.0400 -2.8850 0.0000 7 6 1.5300 -2.1637 1.2493 8 1 0.4399 -2.1637 1.2492 9 7 2.0178 -2.8546 2.4454 10 6 1.3407 -3.9113 2.9367 11 8 0.3245 -4.2909 2.3873 12 7 1.7926 -4.5503 4.0339 13 6 1.0598 -5.7026 4.5643 14 6 1.7801 -6.2388 5.8032 15 6 1.0144 -7.4419 6.3575 16 6 1.7243 -7.9704 7.5773 17 1 2.6310 -7.4959 7.9223 18 6 1.2160 -9.0596 8.2527 19 7 0.1121 -9.6378 7.8323 20 14 2.0955 -9.7143 9.7651 21 1 1.5720 -9.0325 10.9761 22 1 1.8612 -11.1762 9.8800 23 1 3.5524 -9.4546 9.6418 24 6 2.0400 -0.7212 1.2493 25 1 3.1299 -0.7212 1.2493 26 6 1.5295 0.0002 2.4981 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 3.1299 -0.7208 -1.2495 31 1 1.6767 -0.2074 -2.1392 32 1 1.8936 -2.6777 -2.1390 33 1 0.4400 -2.1637 -1.2493 34 1 3.1299 -2.8850 0.0000 35 1 1.6763 -3.9125 0.0002 36 1 2.8283 -2.5515 2.8838 37 1 2.6031 -4.2472 4.4723 38 1 0.0491 -5.3972 4.8350 39 1 1.0123 -6.4837 3.8055 40 1 2.7907 -6.5444 5.5320 41 1 1.8279 -5.4579 6.5621 42 1 0.0040 -7.1359 6.6287 43 1 0.9662 -8.2229 5.5987 44 1 -0.2456 -10.4038 8.3077 45 1 1.8924 -0.5135 3.3884 46 1 1.8924 1.0280 2.4979 47 1 0.4395 0.0002 2.4977 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171412049.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:30 Heat of formation + Delta-G solvation = -95.660143 kcal Electronic energy + Delta-G solvation = -22472.213056 eV Core-core repulsion = 19266.230806 eV Total energy + Delta-G solvation = -3205.982250 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.48398 -39.97246 -36.99642 -35.42234 -35.16031 -33.70018 -33.03320 -31.07329 -28.65389 -28.01494 -26.54888 -24.99422 -23.19876 -22.29751 -22.20634 -21.70290 -19.94461 -18.74632 -18.48133 -17.63525 -16.78949 -16.54978 -16.11033 -16.00902 -15.60554 -15.44214 -15.11022 -14.76377 -14.49594 -14.30154 -14.18782 -13.72484 -13.54528 -13.41280 -13.20649 -12.83628 -12.75190 -12.54270 -12.47224 -12.36380 -12.25489 -12.13746 -11.67131 -11.65973 -11.62504 -11.40041 -11.22275 -11.19138 -11.04678 -10.84598 -10.55279 -10.29392 -9.70966 -8.19214 -6.30903 1.41729 1.43361 1.54262 1.73920 2.18037 2.42210 3.14463 3.33018 3.62671 3.78862 3.92278 4.14828 4.18210 4.22304 4.24469 4.41785 4.43124 4.47204 4.52833 4.56464 4.69904 4.74411 4.88550 4.94861 4.96099 4.98733 5.05917 5.08642 5.14499 5.17478 5.18838 5.24254 5.28833 5.36944 5.42775 5.47570 5.48421 5.55525 5.64642 5.67969 5.71279 5.84529 6.06181 6.22908 6.86533 7.15756 7.38720 7.62743 8.93073 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042335 B = 0.002479 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.234519 B =11292.378829 C =11484.323143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.079 4.079 3 H 0.091 0.909 4 C -0.111 4.111 5 C -0.117 4.117 6 C -0.127 4.127 7 C 0.167 3.833 8 H 0.062 0.938 9 N -0.726 5.726 10 C 0.697 3.303 11 O -0.641 6.641 12 N -0.731 5.731 13 C 0.151 3.849 14 C -0.099 4.099 15 C 0.023 3.977 16 C -0.540 4.540 17 H 0.067 0.933 18 C -0.005 4.005 19 N -0.936 5.936 20 Si 0.968 3.032 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.260 1.260 24 C -0.084 4.084 25 H 0.092 0.908 26 C -0.149 4.149 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.410 0.590 37 H 0.411 0.589 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.068 0.932 41 H 0.068 0.932 42 H -0.008 1.008 43 H -0.009 1.009 44 H 0.263 0.737 45 H 0.052 0.948 46 H 0.072 0.928 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.373 23.802 -16.625 30.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.098 4.098 3 H 0.110 0.890 4 C -0.148 4.148 5 C -0.156 4.156 6 C -0.166 4.166 7 C 0.062 3.938 8 H 0.080 0.920 9 N -0.381 5.381 10 C 0.397 3.603 11 O -0.523 6.523 12 N -0.387 5.387 13 C 0.026 3.974 14 C -0.137 4.137 15 C -0.014 4.014 16 C -0.578 4.578 17 H 0.085 0.915 18 C -0.202 4.202 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.184 1.184 24 C -0.103 4.103 25 H 0.110 0.890 26 C -0.206 4.206 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.053 0.947 36 H 0.246 0.754 37 H 0.248 0.752 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.010 0.990 43 H 0.010 0.990 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.091 0.909 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.341 23.323 -17.075 29.823 hybrid contribution 0.370 -0.854 1.184 1.506 sum 7.711 22.469 -15.891 28.580 Atomic orbital electron populations 1.22033 0.95939 1.01414 1.02083 1.21101 0.95487 0.99797 0.93370 0.89036 1.21587 1.01164 0.94275 0.97807 1.21530 1.00714 0.96564 0.96743 1.21905 1.01300 0.98417 0.94984 1.20946 0.98638 0.91482 0.82743 0.91991 1.45056 1.29919 1.31802 1.31336 1.16206 0.82951 0.80584 0.80595 1.90884 1.28304 1.69800 1.63301 1.45032 1.30749 1.33340 1.29586 1.21045 0.94900 0.86316 0.95172 1.21580 0.99243 0.98029 0.94861 1.18943 0.94834 0.92799 0.94861 1.21679 1.10337 1.13835 1.11959 0.91468 1.26044 0.95803 0.97139 1.01229 1.70115 1.22557 1.23011 1.41956 0.85399 0.79257 0.77195 0.78893 1.19786 1.21058 1.18371 1.21376 1.01327 0.91577 0.96019 0.88995 1.21881 1.01016 1.00820 0.96870 0.93753 0.92487 0.91852 0.90801 0.90777 0.91325 0.92570 0.90710 0.94740 0.75390 0.75246 0.93722 0.93771 0.91366 0.91326 0.99006 0.99022 0.92810 0.92845 0.90907 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 8.15 71.98 0.59 -1.57 16 2 C -0.08 -0.87 2.72 -10.79 -0.03 -0.90 16 3 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 4 C -0.11 -1.18 5.45 30.60 0.17 -1.02 16 5 C -0.12 -1.82 5.65 30.60 0.17 -1.64 16 6 C -0.13 -2.48 5.50 30.60 0.17 -2.31 16 7 C 0.17 3.30 1.62 44.99 0.07 3.37 16 8 H 0.06 1.63 5.86 -2.39 -0.01 1.62 16 9 N -0.73 -15.31 4.39 -457.80 -2.01 -17.32 16 10 C 0.70 21.66 8.53 179.06 1.53 23.18 16 11 O -0.64 -26.47 16.01 -4.01 -0.06 -26.53 16 12 N -0.73 -21.15 5.56 -478.52 -2.66 -23.81 16 13 C 0.15 5.57 5.67 86.38 0.49 6.06 16 14 C -0.10 -3.89 5.27 30.60 0.16 -3.73 16 15 C 0.02 1.24 4.97 29.85 0.15 1.38 16 16 C -0.54 -30.39 9.11 25.60 0.23 -30.15 16 17 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 18 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 19 N -0.94 -57.79 13.29 21.45 0.28 -57.50 16 20 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 23 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 24 C -0.08 -1.06 2.07 -10.80 -0.02 -1.09 16 25 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 26 C -0.15 -1.94 8.68 71.98 0.62 -1.31 16 27 H 0.04 0.79 4.81 -2.39 -0.01 0.78 16 28 H 0.06 0.79 6.43 -2.39 -0.02 0.77 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 1.00 6.43 -2.39 -0.02 0.98 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.41 5.84 8.40 -92.71 -0.78 5.06 16 37 H 0.41 8.82 8.49 -92.71 -0.79 8.04 16 38 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 41 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 42 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 43 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 44 H 0.26 15.26 8.31 -92.72 -0.77 14.49 16 45 H 0.05 0.73 7.45 -2.39 -0.02 0.71 16 46 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.05 0.74 6.43 -2.39 -0.02 0.73 16 Total: -1.00 -72.59 361.42 1.72 -70.87 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -0.62 Total: 17.76 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: 4.76 Total: -9.52 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -4.38 Total: -98.63 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.06 Total: -26.53 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -72.59 1.72 -70.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171412049.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.790 kcal (2) G-P(sol) polarization free energy of solvation -72.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds