Wall clock time and date at job start Tue Mar 31 2020 06:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47223 * 2 1 4 4 C 1.53000 * 109.46922 * 240.00101 * 2 1 3 5 5 C 1.53000 * 109.46922 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47499 * 60.00067 * 5 4 2 7 7 C 1.53003 * 109.46870 * 300.00434 * 6 5 4 8 8 H 1.08998 * 109.46706 * 299.99465 * 7 6 5 9 9 N 1.46497 * 109.46912 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00459 * 299.99771 * 9 7 6 11 11 C 1.34784 * 119.99763 * 119.99922 * 9 7 6 12 12 O 1.21581 * 120.00160 * 359.97438 * 11 9 7 13 13 N 1.34777 * 119.99541 * 180.02562 * 11 9 7 14 14 C 1.46500 * 119.99746 * 179.97438 * 13 11 9 15 15 C 1.52996 * 109.47368 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47346 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.46931 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00193 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99398 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46845 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47399 * 299.99813 * 21 19 17 24 24 H 1.48498 * 109.47295 * 60.00420 * 21 19 17 25 25 C 1.53000 * 109.47414 * 59.99514 * 7 6 5 26 26 H 1.09007 * 109.46901 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47156 * 299.99492 * 1 2 3 28 28 H 1.08997 * 109.47359 * 60.00245 * 1 2 3 29 29 H 1.08995 * 109.47131 * 60.00150 * 4 2 1 30 30 H 1.08998 * 109.47544 * 299.99703 * 4 2 1 31 31 H 1.08998 * 109.47223 * 299.99899 * 5 4 2 32 32 H 1.08998 * 109.47339 * 179.97438 * 5 4 2 33 33 H 1.08994 * 109.47584 * 180.02562 * 6 5 4 34 34 H 1.09007 * 109.46763 * 59.99703 * 6 5 4 35 35 H 1.09002 * 109.47147 * 270.00549 * 10 9 7 36 36 H 1.09001 * 109.46790 * 30.00074 * 10 9 7 37 37 H 1.08999 * 109.47697 * 149.99625 * 10 9 7 38 38 H 0.97003 * 120.00723 * 359.97438 * 13 11 9 39 39 H 1.09000 * 109.47175 * 59.99850 * 14 13 11 40 40 H 1.09004 * 109.47042 * 299.99808 * 14 13 11 41 41 H 1.09004 * 109.47368 * 59.99943 * 15 14 13 42 42 H 1.08996 * 109.47261 * 300.00328 * 15 14 13 43 43 H 1.09000 * 109.46986 * 60.00254 * 16 15 14 44 44 H 1.08992 * 109.46974 * 300.00318 * 16 15 14 45 45 H 0.97000 * 119.99706 * 359.97438 * 20 19 17 46 46 H 1.08998 * 109.46768 * 59.99989 * 25 7 6 47 47 H 1.09000 * 109.47156 * 179.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7207 -1.2496 6 6 4.0806 -1.4416 -0.0004 7 6 3.5705 -0.7204 1.2489 8 1 3.9335 0.3074 1.2487 9 7 4.0589 -1.4110 2.4450 10 6 3.7052 -2.8136 2.6769 11 6 4.8338 -0.7559 3.3322 12 8 5.1278 0.4080 3.1396 13 7 5.2835 -1.3914 4.4323 14 6 6.1262 -0.6796 5.3964 15 6 6.4958 -1.6216 6.5439 16 6 7.3764 -0.8783 7.5504 17 6 7.7400 -1.8061 8.6810 18 1 7.3794 -2.8242 8.6814 19 6 8.5330 -1.3552 9.7149 20 7 8.9716 -0.1153 9.7147 21 14 8.9842 -2.5053 11.1159 22 1 9.8377 -1.7835 12.0935 23 1 7.7467 -2.9730 11.7906 24 1 9.7264 -3.6736 10.5779 25 6 2.0405 -0.7210 1.2492 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6766 -0.2074 -2.1392 30 1 1.6767 -1.7489 -1.2493 31 1 3.9329 0.3071 -1.2498 32 1 3.9333 -1.2349 -2.1393 33 1 5.1705 -1.4408 -0.0004 34 1 3.7176 -2.4694 -0.0002 35 1 2.7783 -2.8649 3.2482 36 1 3.5703 -3.3173 1.7197 37 1 4.5037 -3.3023 3.2351 38 1 5.0493 -2.3202 4.5859 39 1 5.5814 0.1777 5.7917 40 1 7.0343 -0.3360 4.9010 41 1 7.0405 -2.4792 6.1489 42 1 5.5876 -1.9649 7.0391 43 1 6.8321 -0.0206 7.9455 44 1 8.2846 -0.5355 7.0549 45 1 8.7376 0.4818 8.9869 46 1 1.6776 -1.7488 1.2494 47 1 1.6772 -0.2076 2.1395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171447983.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:05 Heat of formation + Delta-G solvation = -70.105899 kcal Electronic energy + Delta-G solvation = -22426.040555 eV Core-core repulsion = 19221.166420 eV Total energy + Delta-G solvation = -3204.874135 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.47145 -38.71305 -35.68208 -35.20424 -33.58530 -32.57993 -31.22392 -29.82214 -27.08813 -26.72051 -26.09830 -23.31324 -22.47794 -21.58285 -20.86527 -20.05068 -19.42566 -17.89098 -16.85752 -16.38826 -15.78358 -15.41638 -14.84993 -14.56722 -14.52548 -14.40792 -13.73272 -13.69627 -13.58877 -13.23018 -12.95121 -12.93756 -12.68959 -12.47914 -12.15681 -11.94956 -11.76747 -11.58600 -11.36800 -11.21242 -10.87465 -10.83929 -10.78524 -10.58281 -10.47100 -10.18678 -10.06006 -9.98986 -9.73899 -8.94088 -8.56436 -8.49882 -8.32555 -6.35754 -4.05376 2.66748 3.31934 3.43699 3.45829 3.64727 4.03042 4.33410 4.44519 4.54057 4.55196 4.74905 4.82740 4.86167 5.06861 5.13534 5.16330 5.27287 5.32610 5.33109 5.36773 5.41431 5.46561 5.51926 5.58368 5.64192 5.70424 5.73203 5.82338 5.87224 5.88807 5.96003 6.06708 6.08965 6.15848 6.40853 6.49920 6.51708 6.75575 6.89964 7.00769 7.37931 7.50550 8.05338 8.19766 8.45800 8.72139 8.88314 9.67179 11.05025 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042511 B = 0.002476 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.497748 B =11305.335863 C =11334.048443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 H 0.072 0.928 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.128 4.128 7 C 0.157 3.843 8 H 0.102 0.898 9 N -0.632 5.632 10 C 0.078 3.922 11 C 0.702 3.298 12 O -0.593 6.593 13 N -0.741 5.741 14 C 0.134 3.866 15 C -0.113 4.113 16 C 0.011 3.989 17 C -0.603 4.603 18 H 0.048 0.952 19 C 0.014 3.986 20 N -0.912 5.912 21 Si 1.070 2.930 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.288 1.288 25 C -0.121 4.121 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.394 0.606 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.010 0.990 44 H 0.010 0.990 45 H 0.270 0.730 46 H 0.063 0.937 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.438 -5.237 -22.719 28.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.091 0.909 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.167 4.167 7 C 0.053 3.947 8 H 0.120 0.880 9 N -0.370 5.370 10 C -0.066 4.066 11 C 0.404 3.596 12 O -0.471 6.471 13 N -0.397 5.397 14 C 0.010 3.990 15 C -0.151 4.151 16 C -0.027 4.027 17 C -0.642 4.642 18 H 0.067 0.933 19 C -0.190 4.190 20 N -0.548 5.548 21 Si 0.898 3.102 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.215 1.215 25 C -0.160 4.160 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.229 0.771 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.352 -4.464 -21.389 26.704 hybrid contribution -1.016 -0.545 -1.335 1.764 sum -16.368 -5.009 -22.724 28.450 Atomic orbital electron populations 1.21813 0.95063 1.01738 1.01726 1.21106 0.95539 0.99905 0.94412 0.90913 1.21620 0.95433 1.00650 0.97483 1.21495 0.95600 1.01103 0.97292 1.21905 1.01035 0.99605 0.94115 1.20923 0.93149 0.98006 0.82600 0.88029 1.47075 1.54064 1.12098 1.23719 1.21676 1.00574 0.82171 1.02159 1.15955 0.78840 0.84745 0.80093 1.90892 1.63178 1.15535 1.77482 1.45500 1.55388 1.15615 1.23187 1.21499 0.93262 0.95536 0.88675 1.21744 1.00363 0.98086 0.94895 1.19152 0.93976 0.95975 0.93559 1.22015 1.35320 0.98885 1.07949 0.93326 1.25871 0.93976 0.98643 1.00535 1.70774 1.43830 1.05567 1.34623 0.83535 0.76376 0.74671 0.75621 1.20751 1.21470 1.21466 1.21947 0.94934 1.00991 0.98079 0.92764 0.92626 0.92670 0.91921 0.91977 0.91628 0.91695 0.91571 0.91769 0.92786 0.90867 0.91458 0.77101 0.92052 0.92060 0.92654 0.92630 0.97151 0.97153 0.91999 0.91788 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.19 37.16 0.34 -0.60 16 2 C -0.09 -0.67 2.72 -90.62 -0.25 -0.92 16 3 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.11 -0.74 5.20 -26.73 -0.14 -0.88 16 5 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 6 C -0.13 -1.10 5.18 -26.73 -0.14 -1.24 16 7 C 0.16 1.68 2.52 -67.93 -0.17 1.51 16 8 H 0.10 1.37 6.90 -51.93 -0.36 1.01 16 9 N -0.63 -7.60 2.76 -179.67 -0.50 -8.10 16 10 C 0.08 0.65 9.26 59.85 0.55 1.21 16 11 C 0.70 11.43 8.28 -86.91 -0.72 10.71 16 12 O -0.59 -12.04 15.67 5.29 0.08 -11.96 16 13 N -0.74 -11.47 5.42 -65.22 -0.35 -11.82 16 14 C 0.13 2.47 5.67 -4.04 -0.02 2.45 16 15 C -0.11 -2.28 5.27 -26.73 -0.14 -2.42 16 16 C 0.01 0.28 4.28 -27.88 -0.12 0.16 16 17 C -0.60 -17.25 9.11 -34.44 -0.31 -17.56 16 18 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 19 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 20 N -0.91 -28.33 13.65 55.43 0.76 -27.57 16 21 Si 1.07 25.37 29.90 -169.99 -5.08 20.29 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 25 C -0.12 -1.06 4.49 -26.73 -0.12 -1.18 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.48 6.66 -51.93 -0.35 0.14 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.48 6.43 -51.93 -0.33 0.15 16 37 H 0.07 0.54 6.36 -51.93 -0.33 0.21 16 38 H 0.39 5.00 6.20 -40.82 -0.25 4.75 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.01 0.28 8.01 -51.93 -0.42 -0.14 16 44 H 0.01 0.28 8.01 -51.93 -0.42 -0.14 16 45 H 0.27 8.36 7.22 -40.82 -0.29 8.06 16 46 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 364.63 15.07 5.49 5.49 Total: -1.00 -33.52 364.63 -9.78 -43.30 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -8.69 Total: -0.16 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -1.49 Total: -9.47 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: -0.09 Total: -47.49 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.08 Total: -11.96 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.08 Total: 20.29 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.52 -9.78 -43.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171447983.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.802 kcal (2) G-P(sol) polarization free energy of solvation -33.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds