Wall clock time and date at job start Tue Mar 31 2020 06:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47223 * 2 1 4 4 C 1.53000 * 109.46922 * 240.00101 * 2 1 3 5 5 C 1.53000 * 109.46922 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47499 * 60.00067 * 5 4 2 7 7 C 1.53003 * 109.46870 * 300.00434 * 6 5 4 8 8 H 1.08998 * 109.46706 * 299.99465 * 7 6 5 9 9 N 1.46497 * 109.46912 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00459 * 299.99771 * 9 7 6 11 11 C 1.34784 * 119.99763 * 119.99922 * 9 7 6 12 12 O 1.21581 * 120.00160 * 359.97438 * 11 9 7 13 13 N 1.34777 * 119.99541 * 180.02562 * 11 9 7 14 14 C 1.46500 * 119.99746 * 179.97438 * 13 11 9 15 15 C 1.52996 * 109.47368 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47346 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.46931 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00193 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99398 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46845 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47399 * 299.99813 * 21 19 17 24 24 H 1.48498 * 109.47295 * 60.00420 * 21 19 17 25 25 C 1.53000 * 109.47414 * 59.99514 * 7 6 5 26 26 H 1.09007 * 109.46901 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47156 * 299.99492 * 1 2 3 28 28 H 1.08997 * 109.47359 * 60.00245 * 1 2 3 29 29 H 1.08995 * 109.47131 * 60.00150 * 4 2 1 30 30 H 1.08998 * 109.47544 * 299.99703 * 4 2 1 31 31 H 1.08998 * 109.47223 * 299.99899 * 5 4 2 32 32 H 1.08998 * 109.47339 * 179.97438 * 5 4 2 33 33 H 1.08994 * 109.47584 * 180.02562 * 6 5 4 34 34 H 1.09007 * 109.46763 * 59.99703 * 6 5 4 35 35 H 1.09002 * 109.47147 * 270.00549 * 10 9 7 36 36 H 1.09001 * 109.46790 * 30.00074 * 10 9 7 37 37 H 1.08999 * 109.47697 * 149.99625 * 10 9 7 38 38 H 0.97003 * 120.00723 * 359.97438 * 13 11 9 39 39 H 1.09000 * 109.47175 * 59.99850 * 14 13 11 40 40 H 1.09004 * 109.47042 * 299.99808 * 14 13 11 41 41 H 1.09004 * 109.47368 * 59.99943 * 15 14 13 42 42 H 1.08996 * 109.47261 * 300.00328 * 15 14 13 43 43 H 1.09000 * 109.46986 * 60.00254 * 16 15 14 44 44 H 1.08992 * 109.46974 * 300.00318 * 16 15 14 45 45 H 0.97000 * 119.99706 * 359.97438 * 20 19 17 46 46 H 1.08998 * 109.46768 * 59.99989 * 25 7 6 47 47 H 1.09000 * 109.47156 * 179.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7207 -1.2496 6 6 4.0806 -1.4416 -0.0004 7 6 3.5705 -0.7204 1.2489 8 1 3.9335 0.3074 1.2487 9 7 4.0589 -1.4110 2.4450 10 6 3.7052 -2.8136 2.6769 11 6 4.8338 -0.7559 3.3322 12 8 5.1278 0.4080 3.1396 13 7 5.2835 -1.3914 4.4323 14 6 6.1262 -0.6796 5.3964 15 6 6.4958 -1.6216 6.5439 16 6 7.3764 -0.8783 7.5504 17 6 7.7400 -1.8061 8.6810 18 1 7.3794 -2.8242 8.6814 19 6 8.5330 -1.3552 9.7149 20 7 8.9716 -0.1153 9.7147 21 14 8.9842 -2.5053 11.1159 22 1 9.8377 -1.7835 12.0935 23 1 7.7467 -2.9730 11.7906 24 1 9.7264 -3.6736 10.5779 25 6 2.0405 -0.7210 1.2492 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6766 -0.2074 -2.1392 30 1 1.6767 -1.7489 -1.2493 31 1 3.9329 0.3071 -1.2498 32 1 3.9333 -1.2349 -2.1393 33 1 5.1705 -1.4408 -0.0004 34 1 3.7176 -2.4694 -0.0002 35 1 2.7783 -2.8649 3.2482 36 1 3.5703 -3.3173 1.7197 37 1 4.5037 -3.3023 3.2351 38 1 5.0493 -2.3202 4.5859 39 1 5.5814 0.1777 5.7917 40 1 7.0343 -0.3360 4.9010 41 1 7.0405 -2.4792 6.1489 42 1 5.5876 -1.9649 7.0391 43 1 6.8321 -0.0206 7.9455 44 1 8.2846 -0.5355 7.0549 45 1 8.7376 0.4818 8.9869 46 1 1.6776 -1.7488 1.2494 47 1 1.6772 -0.2076 2.1395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171447983.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:04 Heat of formation + Delta-G solvation = -90.000905 kcal Electronic energy + Delta-G solvation = -22426.903268 eV Core-core repulsion = 19221.166420 eV Total energy + Delta-G solvation = -3205.736847 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.56436 -39.61267 -37.21124 -36.32356 -35.46721 -33.36747 -32.78772 -30.77288 -28.28760 -27.60031 -27.28731 -25.07842 -23.45996 -22.60120 -22.39952 -20.91156 -20.41275 -19.04180 -18.90972 -17.56874 -17.05004 -16.23210 -15.99875 -15.72337 -15.62882 -15.46416 -15.26347 -15.03917 -14.68085 -14.52092 -14.05233 -13.67840 -13.61132 -13.55286 -13.30564 -13.17806 -12.78563 -12.58849 -12.58307 -12.49521 -12.09588 -12.02965 -11.86116 -11.84097 -11.81037 -11.53298 -11.32335 -11.17547 -11.10239 -10.70139 -10.54610 -10.30058 -9.52460 -8.69098 -6.40243 1.53410 1.56072 1.62899 1.81811 2.03849 2.58286 2.92665 3.16237 3.65329 3.78200 3.91847 4.01029 4.07442 4.08464 4.17844 4.21337 4.39272 4.40230 4.48871 4.50578 4.60691 4.64323 4.73577 4.77204 4.78517 4.82925 4.85491 4.94341 4.95746 5.03405 5.10258 5.13501 5.24873 5.31046 5.31969 5.38292 5.40168 5.41881 5.45988 5.55134 5.57031 5.90059 5.97494 6.18050 6.55581 6.89821 7.43015 7.47144 8.71711 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042511 B = 0.002476 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.497748 B =11305.335863 C =11334.048443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.057 0.943 4 C -0.108 4.108 5 C -0.116 4.116 6 C -0.120 4.120 7 C 0.153 3.847 8 H 0.064 0.936 9 N -0.624 5.624 10 C 0.069 3.931 11 C 0.695 3.305 12 O -0.642 6.642 13 N -0.731 5.731 14 C 0.149 3.851 15 C -0.093 4.093 16 C 0.008 3.992 17 C -0.617 4.617 18 H 0.059 0.941 19 C -0.044 4.044 20 N -0.940 5.940 21 Si 1.121 2.879 22 H -0.287 1.287 23 H -0.266 1.266 24 H -0.266 1.266 25 C -0.112 4.112 26 H 0.064 0.936 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.410 0.590 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.068 0.932 42 H 0.068 0.932 43 H -0.011 1.011 44 H -0.011 1.011 45 H 0.254 0.746 46 H 0.083 0.917 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.065 -8.373 -23.742 30.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 H 0.075 0.925 4 C -0.146 4.146 5 C -0.154 4.154 6 C -0.159 4.159 7 C 0.049 3.951 8 H 0.083 0.917 9 N -0.360 5.360 10 C -0.073 4.073 11 C 0.396 3.604 12 O -0.524 6.524 13 N -0.388 5.388 14 C 0.024 3.976 15 C -0.131 4.131 16 C -0.030 4.030 17 C -0.655 4.655 18 H 0.077 0.923 19 C -0.241 4.241 20 N -0.577 5.577 21 Si 0.941 3.059 22 H -0.212 1.212 23 H -0.191 1.191 24 H -0.191 1.191 25 C -0.150 4.150 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.249 0.751 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.007 0.993 44 H 0.007 0.993 45 H 0.064 0.936 46 H 0.102 0.898 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.030 -7.659 -22.461 29.209 hybrid contribution -0.542 0.460 -1.082 1.294 sum -17.572 -7.200 -23.543 30.247 Atomic orbital electron populations 1.21784 0.93979 1.02429 1.01821 1.21106 0.96384 0.99086 0.94400 0.92489 1.21590 0.94508 1.01373 0.97109 1.21503 0.96390 1.00377 0.97108 1.21850 1.00001 1.00582 0.93439 1.21040 0.94526 0.96438 0.83076 0.91749 1.47170 1.52481 1.13493 1.22855 1.21990 1.01421 0.79774 1.04104 1.16180 0.79259 0.84329 0.80622 1.90859 1.65073 1.17897 1.78589 1.45161 1.54908 1.16173 1.22526 1.21061 0.92949 0.94903 0.88642 1.21461 0.99811 0.97800 0.94012 1.19114 0.93919 0.95564 0.94380 1.22475 1.34862 0.99640 1.08521 0.92314 1.27552 0.93725 0.99215 1.03585 1.70917 1.45558 1.06689 1.34578 0.82900 0.77142 0.73237 0.72592 1.21220 1.19145 1.19120 1.21873 0.93117 1.02034 0.98016 0.91716 0.93388 0.91808 0.90870 0.90574 0.92963 0.90126 0.93231 0.89601 0.91350 0.88256 0.90768 0.75147 0.93657 0.93616 0.91347 0.91372 0.99299 0.99275 0.93645 0.89813 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.19 71.98 0.66 -0.92 16 2 C -0.09 -1.24 2.72 -10.79 -0.03 -1.26 16 3 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 4 C -0.11 -1.13 5.20 30.59 0.16 -0.97 16 5 C -0.12 -1.48 5.92 30.60 0.18 -1.30 16 6 C -0.12 -1.89 5.18 30.60 0.16 -1.73 16 7 C 0.15 3.22 2.52 44.99 0.11 3.34 16 8 H 0.06 1.85 6.90 -2.39 -0.02 1.84 16 9 N -0.62 -14.46 2.76 -840.62 -2.32 -16.78 16 10 C 0.07 0.95 9.26 127.77 1.18 2.14 16 11 C 0.69 22.84 8.28 179.05 1.48 24.32 16 12 O -0.64 -27.37 15.67 -3.97 -0.06 -27.44 16 13 N -0.73 -22.21 5.42 -478.53 -2.59 -24.80 16 14 C 0.15 5.61 5.67 86.38 0.49 6.10 16 15 C -0.09 -3.70 5.27 30.59 0.16 -3.54 16 16 C 0.01 0.42 4.28 29.85 0.13 0.55 16 17 C -0.62 -35.20 9.11 25.60 0.23 -34.96 16 18 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 19 C -0.04 -2.57 5.46 84.66 0.46 -2.11 16 20 N -0.94 -59.67 13.65 21.45 0.29 -59.37 16 21 Si 1.12 50.10 29.90 68.60 2.05 52.15 16 22 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 25 C -0.11 -1.83 4.49 30.59 0.14 -1.69 16 26 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 0.99 6.66 -2.38 -0.02 0.97 16 35 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.10 0.90 6.43 -2.39 -0.02 0.88 16 37 H 0.07 0.95 6.36 -2.39 -0.02 0.93 16 38 H 0.41 9.61 6.20 -92.71 -0.58 9.04 16 39 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 41 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 42 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 43 H -0.01 -0.64 8.01 -2.39 -0.02 -0.66 16 44 H -0.01 -0.63 8.01 -2.39 -0.02 -0.64 16 45 H 0.25 16.43 7.22 -92.71 -0.67 15.76 16 46 H 0.08 1.05 7.67 -2.39 -0.02 1.03 16 47 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -75.07 364.63 3.33 -71.74 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.44 Total: 16.56 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: 5.52 Total: -12.05 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -4.62 Total: -100.95 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.06 Total: -27.44 kcal Atomic # 14 Polarization: 50.10 SS G_CDS: 2.05 Total: 52.15 kcal Total: -75.07 3.33 -71.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171447983.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.266 kcal (2) G-P(sol) polarization free energy of solvation -75.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds