Wall clock time and date at job start Tue Mar 31 2020 06:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.47023 * 2 1 4 4 C 1.52997 * 109.47072 * 239.99941 * 2 1 3 5 5 C 1.53000 * 109.46777 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47554 * 59.99760 * 5 4 2 7 7 C 1.53002 * 109.46942 * 299.99957 * 6 5 4 8 8 H 1.09010 * 109.46973 * 179.97438 * 7 6 5 9 9 N 1.46496 * 109.47231 * 299.99856 * 7 6 5 10 10 C 1.46496 * 120.00119 * 125.79777 * 9 7 6 11 11 C 1.34778 * 119.99871 * 305.78938 * 9 7 6 12 12 O 1.21586 * 120.00183 * 0.02562 * 11 9 7 13 13 N 1.34778 * 120.00029 * 180.27413 * 11 9 7 14 14 C 1.46491 * 120.00206 * 179.72835 * 13 11 9 15 15 C 1.52999 * 109.47322 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47283 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47355 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99915 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00279 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99784 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 119.99965 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47367 * 89.99487 * 21 19 17 23 23 H 1.48506 * 109.47268 * 209.99703 * 21 19 17 24 24 H 1.48507 * 109.47305 * 329.99284 * 21 19 17 25 25 C 1.52997 * 109.47159 * 60.00187 * 7 6 5 26 26 H 1.08992 * 109.47215 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47275 * 300.00575 * 1 2 3 28 28 H 1.09010 * 109.46605 * 59.99938 * 1 2 3 29 29 H 1.08996 * 109.47346 * 60.00420 * 4 2 1 30 30 H 1.08997 * 109.47242 * 299.99616 * 4 2 1 31 31 H 1.09006 * 109.46997 * 299.99863 * 5 4 2 32 32 H 1.09001 * 109.47452 * 180.02562 * 5 4 2 33 33 H 1.08998 * 109.47908 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.47497 * 59.99791 * 6 5 4 35 35 H 1.09003 * 109.46931 * 264.10695 * 10 9 7 36 36 H 1.09000 * 109.47201 * 24.10426 * 10 9 7 37 37 H 1.08995 * 109.47667 * 144.10848 * 10 9 7 38 38 H 0.96999 * 119.99671 * 359.73351 * 13 11 9 39 39 H 1.09009 * 109.47047 * 300.00332 * 14 13 11 40 40 H 1.08996 * 109.47416 * 59.99543 * 14 13 11 41 41 H 1.09001 * 109.46845 * 299.99724 * 15 14 13 42 42 H 1.09001 * 109.46980 * 59.99763 * 15 14 13 43 43 H 1.09001 * 109.46938 * 299.99647 * 16 15 14 44 44 H 1.09001 * 109.47323 * 59.99952 * 16 15 14 45 45 H 0.97001 * 119.99765 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.47754 * 59.99447 * 25 7 6 47 47 H 1.09004 * 109.47192 * 179.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0795 -1.4433 0.0004 7 6 3.5695 -0.7219 1.2496 8 1 3.9322 -1.2363 2.1397 9 7 4.0583 0.6591 1.2498 10 6 3.1128 1.7707 1.3779 11 6 5.3778 0.9069 1.1324 12 8 6.1626 -0.0157 1.0258 13 7 5.8281 2.1772 1.1382 14 6 7.2629 2.4464 1.0165 15 6 7.5032 3.9570 1.0511 16 6 9.0017 4.2382 0.9234 17 6 9.2384 5.7261 0.9581 18 1 8.4035 6.4035 1.0605 19 6 10.5208 6.2227 0.8580 20 7 11.5374 5.3978 0.7328 21 14 10.8140 8.0669 0.9003 22 1 11.0207 8.5033 2.3047 23 1 12.0196 8.3951 0.0975 24 1 9.6350 8.7689 0.3323 25 6 2.0395 -0.7215 1.2493 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.6768 -0.2074 -2.1392 30 1 1.6768 -1.7489 -1.2492 31 1 3.9337 0.3058 -1.2486 32 1 3.9335 -1.2352 -2.1390 33 1 5.1695 -1.4441 0.0005 34 1 3.7159 -2.4708 0.0003 35 1 2.8611 2.1496 0.3873 36 1 2.2072 1.4221 1.8744 37 1 3.5664 2.5676 1.9671 38 1 5.2020 2.9133 1.2230 39 1 7.7924 1.9756 1.8449 40 1 7.6300 2.0412 0.0736 41 1 6.9737 4.4282 0.2230 42 1 7.1362 4.3618 1.9943 43 1 9.5316 3.7670 1.7513 44 1 9.3682 3.8335 -0.0200 45 1 12.4396 5.7472 0.6628 46 1 1.6758 -1.7490 1.2491 47 1 1.6762 -0.2080 2.1395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171447992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:11 Heat of formation + Delta-G solvation = -45.782729 kcal Electronic energy + Delta-G solvation = -23023.075761 eV Core-core repulsion = 19819.256358 eV Total energy + Delta-G solvation = -3203.819403 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.83367 -38.52205 -35.39296 -34.77015 -33.36115 -32.63529 -31.24471 -30.00869 -27.50470 -26.54882 -26.02363 -23.34227 -22.31614 -21.60743 -20.58070 -20.36430 -19.10314 -17.58212 -16.48413 -16.13509 -15.93251 -15.53530 -14.80096 -14.59402 -14.47866 -14.32161 -13.96408 -13.77168 -13.29836 -13.14603 -12.79820 -12.44888 -12.28606 -12.26181 -12.18637 -11.97354 -11.75464 -11.67888 -11.59562 -11.00646 -10.89403 -10.69863 -10.57914 -10.53848 -10.37082 -10.29727 -9.83495 -9.67637 -9.36186 -9.10346 -8.80821 -8.38376 -8.35640 -6.00399 -4.03398 2.76474 3.31540 3.37858 3.40632 3.41836 4.08940 4.44738 4.45711 4.49417 4.51387 4.87191 4.93653 5.01817 5.15911 5.18116 5.28171 5.29764 5.35349 5.35402 5.44822 5.47100 5.52099 5.57447 5.69120 5.73651 5.79622 5.85226 5.86391 6.04122 6.08509 6.12892 6.21563 6.22547 6.34792 6.53498 6.65690 6.69098 6.88246 7.06335 7.09692 7.65750 7.78989 7.98782 8.15491 8.39815 8.82899 9.03372 9.60621 11.10952 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033105 B = 0.002861 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.588642 B = 9783.263068 C =10101.199919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 H 0.091 0.909 4 C -0.111 4.111 5 C -0.113 4.113 6 C -0.142 4.142 7 C 0.171 3.829 8 H 0.068 0.932 9 N -0.629 5.629 10 C 0.071 3.929 11 C 0.703 3.297 12 O -0.588 6.588 13 N -0.742 5.742 14 C 0.135 3.865 15 C -0.120 4.120 16 C 0.024 3.976 17 C -0.522 4.522 18 H 0.055 0.945 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.120 4.120 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.393 0.607 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.261 0.739 46 H 0.076 0.924 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.902 -11.842 -0.462 26.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.133 4.133 3 H 0.109 0.891 4 C -0.149 4.149 5 C -0.151 4.151 6 C -0.180 4.180 7 C 0.068 3.932 8 H 0.086 0.914 9 N -0.368 5.368 10 C -0.073 4.073 11 C 0.405 3.595 12 O -0.466 6.466 13 N -0.398 5.398 14 C 0.011 3.989 15 C -0.158 4.158 16 C -0.013 4.013 17 C -0.560 4.560 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.158 4.158 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.227 0.773 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.071 0.929 46 H 0.095 0.905 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -23.111 -12.528 -0.560 26.294 hybrid contribution -0.106 1.422 0.063 1.428 sum -23.217 -11.105 -0.497 25.741 Atomic orbital electron populations 1.21828 0.95380 1.01632 1.01536 1.21673 0.95275 1.01541 0.94762 0.89129 1.21576 0.95927 1.00214 0.97144 1.21416 0.94870 1.01106 0.97701 1.22050 1.04113 0.98121 0.93686 1.20785 0.92963 0.81039 0.98441 0.91358 1.47048 1.04800 1.06553 1.78417 1.21995 0.94478 0.89674 1.01106 1.15909 0.81741 0.83795 0.78091 1.90843 1.54700 1.43316 1.57782 1.45540 1.09983 1.05683 1.78567 1.21486 0.77827 0.97928 1.01624 1.21880 1.01846 0.91330 1.00725 1.19023 0.88047 0.96666 0.97604 1.21209 0.92466 0.92052 1.50293 0.92678 1.25031 0.96285 0.97866 0.95308 1.69968 0.98942 1.34291 1.50084 0.86585 0.77722 0.85631 0.77987 1.20674 1.21214 1.19901 1.21917 0.94082 1.01649 0.98152 0.92912 0.92824 0.92755 0.92366 0.92331 0.92144 0.92379 0.88550 0.91831 0.92377 0.89980 0.91935 0.77278 0.92052 0.92036 0.92857 0.92861 0.96268 0.96252 0.92935 0.90508 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.19 37.16 0.34 -0.52 16 2 C -0.11 -0.82 2.17 -90.62 -0.20 -1.02 16 3 H 0.09 0.69 3.95 -51.93 -0.20 0.48 16 4 C -0.11 -0.91 5.20 -26.73 -0.14 -1.05 16 5 C -0.11 -1.19 5.76 -26.73 -0.15 -1.35 16 6 C -0.14 -1.61 5.14 -26.73 -0.14 -1.75 16 7 C 0.17 1.80 3.05 -67.93 -0.21 1.60 16 8 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 9 N -0.63 -7.31 2.28 -179.67 -0.41 -7.72 16 10 C 0.07 0.58 7.98 59.84 0.48 1.06 16 11 C 0.70 11.06 7.82 -86.92 -0.68 10.38 16 12 O -0.59 -11.44 14.05 5.29 0.07 -11.37 16 13 N -0.74 -11.26 5.42 -65.23 -0.35 -11.61 16 14 C 0.13 2.46 5.67 -4.05 -0.02 2.44 16 15 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 16 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 17 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 21 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 C -0.12 -0.89 4.18 -26.73 -0.11 -1.00 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.32 8.14 -51.92 -0.42 -0.11 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.75 7.46 -51.93 -0.39 0.36 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.10 1.44 5.76 -51.93 -0.30 1.14 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.44 6.49 -51.93 -0.34 0.11 16 36 H 0.08 0.52 5.26 -51.93 -0.27 0.25 16 37 H 0.06 0.49 6.68 -51.93 -0.35 0.14 16 38 H 0.39 4.91 6.33 -40.82 -0.26 4.65 16 39 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.45 6.68 -51.93 -0.35 0.10 16 LS Contribution 353.66 15.07 5.33 5.33 Total: -1.00 -32.20 353.66 -9.50 -41.70 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -8.34 Total: 0.10 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -1.52 Total: -6.71 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -0.03 Total: -45.60 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.07 Total: -11.37 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.20 -9.50 -41.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171447992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.085 kcal (2) G-P(sol) polarization free energy of solvation -32.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds