Wall clock time and date at job start Tue Mar 31 2020 06:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.47023 * 2 1 4 4 C 1.52997 * 109.47072 * 239.99941 * 2 1 3 5 5 C 1.53000 * 109.46777 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47554 * 59.99760 * 5 4 2 7 7 C 1.53002 * 109.46942 * 299.99957 * 6 5 4 8 8 H 1.09010 * 109.46973 * 179.97438 * 7 6 5 9 9 N 1.46496 * 109.47231 * 299.99856 * 7 6 5 10 10 C 1.46496 * 120.00119 * 125.79777 * 9 7 6 11 11 C 1.34778 * 119.99871 * 305.78938 * 9 7 6 12 12 O 1.21586 * 120.00183 * 0.02562 * 11 9 7 13 13 N 1.34778 * 120.00029 * 180.27413 * 11 9 7 14 14 C 1.46491 * 120.00206 * 179.72835 * 13 11 9 15 15 C 1.52999 * 109.47322 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47283 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47355 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99915 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00279 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99784 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 119.99965 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47367 * 89.99487 * 21 19 17 23 23 H 1.48506 * 109.47268 * 209.99703 * 21 19 17 24 24 H 1.48507 * 109.47305 * 329.99284 * 21 19 17 25 25 C 1.52997 * 109.47159 * 60.00187 * 7 6 5 26 26 H 1.08992 * 109.47215 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47275 * 300.00575 * 1 2 3 28 28 H 1.09010 * 109.46605 * 59.99938 * 1 2 3 29 29 H 1.08996 * 109.47346 * 60.00420 * 4 2 1 30 30 H 1.08997 * 109.47242 * 299.99616 * 4 2 1 31 31 H 1.09006 * 109.46997 * 299.99863 * 5 4 2 32 32 H 1.09001 * 109.47452 * 180.02562 * 5 4 2 33 33 H 1.08998 * 109.47908 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.47497 * 59.99791 * 6 5 4 35 35 H 1.09003 * 109.46931 * 264.10695 * 10 9 7 36 36 H 1.09000 * 109.47201 * 24.10426 * 10 9 7 37 37 H 1.08995 * 109.47667 * 144.10848 * 10 9 7 38 38 H 0.96999 * 119.99671 * 359.73351 * 13 11 9 39 39 H 1.09009 * 109.47047 * 300.00332 * 14 13 11 40 40 H 1.08996 * 109.47416 * 59.99543 * 14 13 11 41 41 H 1.09001 * 109.46845 * 299.99724 * 15 14 13 42 42 H 1.09001 * 109.46980 * 59.99763 * 15 14 13 43 43 H 1.09001 * 109.46938 * 299.99647 * 16 15 14 44 44 H 1.09001 * 109.47323 * 59.99952 * 16 15 14 45 45 H 0.97001 * 119.99765 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.47754 * 59.99447 * 25 7 6 47 47 H 1.09004 * 109.47192 * 179.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0795 -1.4433 0.0004 7 6 3.5695 -0.7219 1.2496 8 1 3.9322 -1.2363 2.1397 9 7 4.0583 0.6591 1.2498 10 6 3.1128 1.7707 1.3779 11 6 5.3778 0.9069 1.1324 12 8 6.1626 -0.0157 1.0258 13 7 5.8281 2.1772 1.1382 14 6 7.2629 2.4464 1.0165 15 6 7.5032 3.9570 1.0511 16 6 9.0017 4.2382 0.9234 17 6 9.2384 5.7261 0.9581 18 1 8.4035 6.4035 1.0605 19 6 10.5208 6.2227 0.8580 20 7 11.5374 5.3978 0.7328 21 14 10.8140 8.0669 0.9003 22 1 11.0207 8.5033 2.3047 23 1 12.0196 8.3951 0.0975 24 1 9.6350 8.7689 0.3323 25 6 2.0395 -0.7215 1.2493 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.6768 -0.2074 -2.1392 30 1 1.6768 -1.7489 -1.2492 31 1 3.9337 0.3058 -1.2486 32 1 3.9335 -1.2352 -2.1390 33 1 5.1695 -1.4441 0.0005 34 1 3.7159 -2.4708 0.0003 35 1 2.8611 2.1496 0.3873 36 1 2.2072 1.4221 1.8744 37 1 3.5664 2.5676 1.9671 38 1 5.2020 2.9133 1.2230 39 1 7.7924 1.9756 1.8449 40 1 7.6300 2.0412 0.0736 41 1 6.9737 4.4282 0.2230 42 1 7.1362 4.3618 1.9943 43 1 9.5316 3.7670 1.7513 44 1 9.3682 3.8335 -0.0200 45 1 12.4396 5.7472 0.6628 46 1 1.6758 -1.7490 1.2491 47 1 1.6762 -0.2080 2.1395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171447992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:10 Heat of formation + Delta-G solvation = -64.651536 kcal Electronic energy + Delta-G solvation = -23023.893974 eV Core-core repulsion = 19819.256358 eV Total energy + Delta-G solvation = -3204.637616 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.82648 -39.54447 -36.94962 -35.78962 -35.13192 -33.55647 -32.83933 -30.98325 -28.57371 -27.97788 -26.77368 -25.07007 -23.24133 -22.49577 -22.27894 -21.21178 -20.22238 -18.72524 -18.44092 -17.22698 -17.09850 -16.53285 -16.44550 -15.91135 -15.57170 -15.46942 -14.94622 -14.81490 -14.29445 -14.16657 -13.98645 -13.74965 -13.47144 -13.37122 -13.14874 -13.01740 -12.89211 -12.74231 -12.64483 -12.49429 -12.35156 -12.21708 -11.82952 -11.67500 -11.59246 -11.35559 -11.19462 -11.08215 -10.97615 -10.64473 -10.55324 -10.13119 -9.40571 -8.19212 -6.30919 1.41837 1.43536 1.54422 1.68424 2.17684 2.42208 3.02913 3.14532 3.75975 3.79868 3.84631 4.15910 4.20465 4.22592 4.22739 4.30093 4.47460 4.49837 4.54820 4.55519 4.61923 4.73974 4.80823 4.87575 4.90101 4.95525 4.98663 5.00531 5.06310 5.13173 5.15880 5.22574 5.29307 5.37127 5.41610 5.46119 5.48964 5.56657 5.63754 5.70753 5.75993 5.84174 6.00168 6.22614 6.86253 7.02529 7.38686 7.61539 8.93113 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033105 B = 0.002861 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.588642 B = 9783.263068 C =10101.199919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 H 0.089 0.911 4 C -0.106 4.106 5 C -0.110 4.110 6 C -0.140 4.140 7 C 0.166 3.834 8 H 0.056 0.944 9 N -0.619 5.619 10 C 0.062 3.938 11 C 0.696 3.304 12 O -0.632 6.632 13 N -0.733 5.733 14 C 0.151 3.849 15 C -0.099 4.099 16 C 0.024 3.976 17 C -0.540 4.540 18 H 0.067 0.933 19 C -0.004 4.004 20 N -0.936 5.936 21 Si 0.968 3.032 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.259 1.259 25 C -0.111 4.111 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.038 0.962 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.069 0.931 38 H 0.408 0.592 39 H 0.044 0.956 40 H 0.043 0.957 41 H 0.067 0.933 42 H 0.068 0.932 43 H -0.009 1.009 44 H -0.009 1.009 45 H 0.263 0.737 46 H 0.089 0.911 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.204 -10.486 -0.031 29.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.107 0.893 4 C -0.143 4.143 5 C -0.148 4.148 6 C -0.178 4.178 7 C 0.063 3.937 8 H 0.074 0.926 9 N -0.356 5.356 10 C -0.080 4.080 11 C 0.397 3.603 12 O -0.514 6.514 13 N -0.390 5.390 14 C 0.026 3.974 15 C -0.137 4.137 16 C -0.013 4.013 17 C -0.578 4.578 18 H 0.085 0.915 19 C -0.202 4.202 20 N -0.576 5.576 21 Si 0.793 3.207 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.183 1.183 25 C -0.148 4.148 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.126 0.874 37 H 0.087 0.913 38 H 0.246 0.754 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.010 0.990 44 H 0.010 0.990 45 H 0.072 0.928 46 H 0.108 0.892 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -26.493 -11.153 -0.122 28.745 hybrid contribution 0.926 0.917 -0.088 1.306 sum -25.567 -10.236 -0.209 27.541 Atomic orbital electron populations 1.21777 0.93838 1.02108 1.02170 1.21661 0.96407 1.01116 0.93847 0.89311 1.21547 0.93569 1.01101 0.98131 1.21368 0.96977 0.99445 0.96971 1.21971 1.01518 0.99487 0.94864 1.20933 0.95345 0.80182 0.97287 0.92588 1.47088 1.03673 1.08125 1.76763 1.22303 0.94601 0.88752 1.02319 1.16138 0.82981 0.83158 0.77991 1.90826 1.56420 1.44550 1.59619 1.45206 1.08772 1.06354 1.78669 1.21033 0.79722 0.96616 1.00039 1.21575 0.97797 0.92331 1.01985 1.18933 0.91717 0.95690 0.94989 1.21680 0.93076 0.93207 1.49878 0.91454 1.26045 0.96056 1.03328 0.94764 1.70120 0.99499 1.36825 1.51201 0.85396 0.77935 0.79083 0.78314 1.19783 1.21069 1.18318 1.21891 0.90972 1.02876 0.99060 0.92540 0.91726 0.92647 0.91905 0.91441 0.94283 0.92977 0.92745 0.90284 0.91238 0.87387 0.91253 0.75402 0.93740 0.93844 0.91474 0.91372 0.99022 0.99046 0.92811 0.89216 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.19 71.98 0.66 -0.48 16 2 C -0.11 -1.26 2.17 -10.79 -0.02 -1.29 16 3 H 0.09 1.05 3.95 -2.38 -0.01 1.04 16 4 C -0.11 -1.51 5.20 30.59 0.16 -1.35 16 5 C -0.11 -2.30 5.76 30.59 0.18 -2.12 16 6 C -0.14 -3.24 5.14 30.59 0.16 -3.08 16 7 C 0.17 3.34 3.05 44.99 0.14 3.48 16 8 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 9 N -0.62 -13.79 2.28 -840.62 -1.91 -15.71 16 10 C 0.06 0.84 7.98 127.77 1.02 1.86 16 11 C 0.70 22.19 7.82 179.05 1.40 23.59 16 12 O -0.63 -25.90 14.05 -3.99 -0.06 -25.95 16 13 N -0.73 -22.05 5.42 -478.55 -2.59 -24.64 16 14 C 0.15 5.66 5.67 86.38 0.49 6.15 16 15 C -0.10 -3.92 5.27 30.59 0.16 -3.76 16 16 C 0.02 1.30 4.97 29.85 0.15 1.44 16 17 C -0.54 -30.44 9.11 25.60 0.23 -30.21 16 18 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 19 C 0.00 -0.26 5.46 84.66 0.46 0.21 16 20 N -0.94 -57.84 13.29 21.45 0.28 -57.55 16 21 Si 0.97 44.01 29.54 68.60 2.03 46.04 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 24 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 25 C -0.11 -1.30 4.18 30.59 0.13 -1.17 16 26 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.04 0.97 7.46 -2.38 -0.02 0.95 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.05 1.75 5.76 -2.39 -0.01 1.73 16 34 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 0.85 6.49 -2.39 -0.02 0.83 16 36 H 0.11 0.95 5.26 -2.39 -0.01 0.93 16 37 H 0.07 0.88 6.68 -2.39 -0.02 0.86 16 38 H 0.41 9.53 6.33 -92.71 -0.59 8.95 16 39 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 40 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.07 2.48 8.14 -2.39 -0.02 2.47 16 42 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 43 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 44 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 45 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 46 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.09 0.76 6.68 -2.38 -0.02 0.75 16 Total: -1.00 -72.46 353.66 3.40 -69.06 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.35 Total: 15.49 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 5.31 Total: -6.73 kcal Atomic # 7 Polarization: -93.68 SS G_CDS: -4.22 Total: -97.90 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.06 Total: -25.95 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -72.46 3.40 -69.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171447992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.408 kcal (2) G-P(sol) polarization free energy of solvation -72.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds