Wall clock time and date at job start Tue Mar 31 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.53002 * 109.47628 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46806 * 300.00074 * 5 4 2 7 7 C 1.53002 * 109.46911 * 59.99917 * 6 5 4 8 8 H 1.09002 * 109.47067 * 59.99825 * 7 6 5 9 9 N 1.46505 * 109.47089 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99673 * 59.99771 * 9 7 6 11 11 C 1.34775 * 120.00203 * 240.00277 * 9 7 6 12 12 O 1.21588 * 119.99815 * 359.97438 * 11 9 7 13 13 N 1.34773 * 120.00373 * 179.97438 * 11 9 7 14 14 C 1.46498 * 120.00195 * 179.97438 * 13 11 9 15 15 C 1.53008 * 109.47076 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.46904 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.46521 * 180.02562 * 16 15 14 18 18 H 1.07991 * 120.00432 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99585 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00232 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00161 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47104 * 90.00284 * 21 19 17 23 23 H 1.48499 * 109.47293 * 210.00530 * 21 19 17 24 24 H 1.48504 * 109.47118 * 330.00533 * 21 19 17 25 25 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 30 30 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 31 31 H 1.09001 * 109.47142 * 180.02562 * 5 4 2 32 32 H 1.09002 * 109.46838 * 59.99718 * 5 4 2 33 33 H 1.08992 * 109.47399 * 299.99952 * 6 5 4 34 34 H 1.09004 * 109.46724 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.46597 * 90.00617 * 10 9 7 36 36 H 1.09000 * 109.47138 * 209.99986 * 10 9 7 37 37 H 1.08995 * 109.47781 * 330.00201 * 10 9 7 38 38 H 0.97002 * 119.99962 * 0.02562 * 13 11 9 39 39 H 1.08998 * 109.47413 * 299.99908 * 14 13 11 40 40 H 1.08999 * 109.47229 * 60.00357 * 14 13 11 41 41 H 1.08998 * 109.46638 * 300.00032 * 15 14 13 42 42 H 1.08999 * 109.47086 * 59.99918 * 15 14 13 43 43 H 1.08996 * 109.46831 * 299.99956 * 16 15 14 44 44 H 1.08993 * 109.47187 * 60.00350 * 16 15 14 45 45 H 0.96992 * 120.00409 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.47103 * 300.00247 * 25 2 1 47 47 H 1.09001 * 109.47066 * 60.00169 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7206 1.2497 6 6 4.0805 -1.4416 0.0004 7 6 3.5705 -0.7204 -1.2488 8 1 3.9335 0.3074 -1.2486 9 7 4.0598 -1.4103 -2.4450 10 6 3.7070 -2.8131 -2.6773 11 6 4.8346 -0.7546 -3.3317 12 8 5.1271 0.4097 -3.1391 13 7 5.2852 -1.3895 -4.4318 14 6 6.1269 -0.6765 -5.3959 15 6 6.4977 -1.6181 -6.5435 16 6 7.3773 -0.8737 -7.5500 17 6 7.7420 -1.8010 -8.6806 18 1 7.3827 -2.8194 -8.6810 19 6 8.5352 -1.3494 -9.7140 20 7 8.8531 -2.1584 -10.7009 21 14 9.1572 0.4120 -9.7130 22 1 10.4649 0.4748 -9.0121 23 1 9.3229 0.8793 -11.1128 24 1 8.1783 1.2823 -9.0132 25 6 2.0400 -0.7212 -1.2491 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.6766 -0.2074 2.1393 30 1 1.6767 -1.7488 1.2493 31 1 3.9333 -1.2348 2.1395 32 1 3.9330 0.3072 1.2498 33 1 3.7176 -2.4693 0.0002 34 1 5.1706 -1.4408 0.0005 35 1 2.7804 -2.8647 -3.2490 36 1 4.5059 -3.3011 -3.2354 37 1 3.5720 -3.3171 -1.7203 38 1 5.0515 -2.3183 -4.5857 39 1 5.5810 0.1801 -5.7913 40 1 7.0346 -0.3318 -4.9006 41 1 7.0435 -2.4750 -6.1484 42 1 5.5898 -1.9625 -7.0387 43 1 6.8319 -0.0167 -7.9450 44 1 8.2851 -0.5297 -7.0545 45 1 9.4108 -1.8406 -11.4281 46 1 1.6767 -1.7489 -1.2491 47 1 1.6768 -0.2074 -2.1391 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171447997.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:14 Heat of formation + Delta-G solvation = -62.735994 kcal Electronic energy + Delta-G solvation = -22445.287997 eV Core-core repulsion = 19240.733445 eV Total energy + Delta-G solvation = -3204.554552 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.47452 -38.71733 -35.67328 -35.19976 -33.32507 -32.56345 -31.46136 -29.96777 -27.29709 -26.74570 -26.63404 -23.35473 -22.40152 -21.53529 -20.59148 -19.98450 -19.36506 -17.92636 -16.77561 -16.42999 -15.79141 -15.44105 -14.85481 -14.60028 -14.55822 -14.52903 -14.01508 -13.64057 -13.58680 -13.23649 -12.94225 -12.71933 -12.66157 -12.51761 -12.15968 -12.01326 -11.89076 -11.81712 -11.37577 -11.21616 -11.02695 -10.87696 -10.85696 -10.59422 -10.47386 -10.19036 -9.97027 -9.79073 -9.64510 -9.21420 -8.94874 -8.54492 -8.50091 -6.05273 -4.03856 2.66423 3.31146 3.32646 3.40075 3.44977 4.02758 4.33213 4.44292 4.45759 4.53865 4.74710 4.82616 4.86953 5.07157 5.13398 5.16304 5.27354 5.28969 5.32547 5.33198 5.36701 5.47040 5.51915 5.56097 5.63233 5.70092 5.71948 5.81907 5.86905 5.88620 5.95662 6.06381 6.06490 6.15480 6.38154 6.48265 6.49202 6.73764 6.85289 6.99884 7.25228 7.38621 7.76948 8.05145 8.51353 8.71461 8.98559 9.57111 11.07963 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038603 B = 0.002615 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.167142 B =10703.441427 C =10799.678649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.072 0.928 4 C -0.115 4.115 5 C -0.117 4.117 6 C -0.128 4.128 7 C 0.157 3.843 8 H 0.102 0.898 9 N -0.632 5.632 10 C 0.077 3.923 11 C 0.703 3.297 12 O -0.594 6.594 13 N -0.741 5.741 14 C 0.132 3.868 15 C -0.112 4.112 16 C -0.011 4.011 17 C -0.521 4.521 18 H 0.072 0.928 19 C 0.066 3.934 20 N -0.904 5.904 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.264 1.264 25 C -0.121 4.121 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.395 0.605 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.019 0.981 44 H 0.015 0.985 45 H 0.263 0.737 46 H 0.064 0.936 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.040 -0.162 24.953 29.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.091 0.909 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.167 4.167 7 C 0.053 3.947 8 H 0.120 0.880 9 N -0.369 5.369 10 C -0.066 4.066 11 C 0.404 3.596 12 O -0.472 6.472 13 N -0.397 5.397 14 C 0.008 3.992 15 C -0.150 4.150 16 C -0.049 4.049 17 C -0.559 4.559 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.543 5.543 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.188 1.188 25 C -0.160 4.160 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.230 0.770 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.037 0.963 44 H 0.033 0.967 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.700 0.687 24.879 29.426 hybrid contribution 0.293 0.230 -0.306 0.482 sum -15.407 0.917 24.572 29.017 Atomic orbital electron populations 1.21815 0.95070 1.01752 1.01718 1.21104 0.95536 0.99888 0.94427 0.90931 1.21623 0.95436 1.00664 0.97479 1.21495 0.95598 1.01085 0.97308 1.21904 1.01033 0.99626 0.94105 1.20933 0.93137 0.97994 0.82608 0.88042 1.47071 1.54019 1.12109 1.23727 1.21684 1.00639 0.82119 1.02179 1.15946 0.78826 0.84732 0.80096 1.90891 1.63286 1.15516 1.77518 1.45481 1.55398 1.15661 1.23143 1.21513 0.93347 0.95551 0.88754 1.21702 1.00547 0.98099 0.94697 1.19500 0.94577 0.96478 0.94331 1.21098 1.31328 0.99108 1.04393 0.91030 1.25030 0.95705 0.97513 0.95266 1.69910 1.37696 1.35775 1.10876 0.86774 0.79728 0.85600 0.77192 1.20248 1.21390 1.18848 1.21954 0.94929 1.01007 0.98064 0.92749 0.92627 0.92683 0.91937 0.91965 0.91699 0.91648 0.91746 0.91569 0.92753 0.91383 0.90873 0.76989 0.92006 0.92017 0.92223 0.92173 0.96274 0.96711 0.92714 0.91759 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.19 37.16 0.34 -0.58 16 2 C -0.09 -0.65 2.72 -90.63 -0.25 -0.90 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 4 C -0.11 -0.72 5.20 -26.73 -0.14 -0.86 16 5 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 6 C -0.13 -1.07 5.18 -26.73 -0.14 -1.21 16 7 C 0.16 1.63 2.52 -67.90 -0.17 1.46 16 8 H 0.10 1.32 6.90 -51.93 -0.36 0.97 16 9 N -0.63 -7.34 2.76 -179.64 -0.50 -7.83 16 10 C 0.08 0.63 9.26 59.85 0.55 1.18 16 11 C 0.70 11.01 8.28 -86.92 -0.72 10.29 16 12 O -0.59 -11.66 15.67 5.29 0.08 -11.58 16 13 N -0.74 -10.93 5.42 -65.22 -0.35 -11.29 16 14 C 0.13 2.28 5.67 -4.04 -0.02 2.26 16 15 C -0.11 -2.14 5.27 -26.73 -0.14 -2.28 16 16 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 17 C -0.52 -14.78 9.66 -34.44 -0.33 -15.11 16 18 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 21 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 25 C -0.12 -1.03 4.49 -26.71 -0.12 -1.15 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.47 6.66 -51.93 -0.35 0.12 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.52 6.36 -51.93 -0.33 0.19 16 37 H 0.07 0.47 6.43 -51.93 -0.33 0.13 16 38 H 0.39 4.78 6.20 -40.82 -0.25 4.52 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 44 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 45 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.06 0.49 7.68 -51.93 -0.40 0.09 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 362.35 15.07 5.46 5.46 Total: -1.00 -33.07 362.35 -9.42 -42.49 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -8.71 Total: -0.99 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -1.50 Total: -6.40 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: -0.08 Total: -46.23 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.08 Total: -11.58 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.07 -9.42 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171447997.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.244 kcal (2) G-P(sol) polarization free energy of solvation -33.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds