Wall clock time and date at job start Tue Mar 31 2020 06:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.53002 * 109.47628 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46806 * 300.00074 * 5 4 2 7 7 C 1.53002 * 109.46911 * 59.99917 * 6 5 4 8 8 H 1.09002 * 109.47067 * 59.99825 * 7 6 5 9 9 N 1.46505 * 109.47089 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99673 * 59.99771 * 9 7 6 11 11 C 1.34775 * 120.00203 * 240.00277 * 9 7 6 12 12 O 1.21588 * 119.99815 * 359.97438 * 11 9 7 13 13 N 1.34773 * 120.00373 * 179.97438 * 11 9 7 14 14 C 1.46498 * 120.00195 * 179.97438 * 13 11 9 15 15 C 1.53008 * 109.47076 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.46904 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.46521 * 180.02562 * 16 15 14 18 18 H 1.07991 * 120.00432 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99585 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00232 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00161 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47104 * 90.00284 * 21 19 17 23 23 H 1.48499 * 109.47293 * 210.00530 * 21 19 17 24 24 H 1.48504 * 109.47118 * 330.00533 * 21 19 17 25 25 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 30 30 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 31 31 H 1.09001 * 109.47142 * 180.02562 * 5 4 2 32 32 H 1.09002 * 109.46838 * 59.99718 * 5 4 2 33 33 H 1.08992 * 109.47399 * 299.99952 * 6 5 4 34 34 H 1.09004 * 109.46724 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.46597 * 90.00617 * 10 9 7 36 36 H 1.09000 * 109.47138 * 209.99986 * 10 9 7 37 37 H 1.08995 * 109.47781 * 330.00201 * 10 9 7 38 38 H 0.97002 * 119.99962 * 0.02562 * 13 11 9 39 39 H 1.08998 * 109.47413 * 299.99908 * 14 13 11 40 40 H 1.08999 * 109.47229 * 60.00357 * 14 13 11 41 41 H 1.08998 * 109.46638 * 300.00032 * 15 14 13 42 42 H 1.08999 * 109.47086 * 59.99918 * 15 14 13 43 43 H 1.08996 * 109.46831 * 299.99956 * 16 15 14 44 44 H 1.08993 * 109.47187 * 60.00350 * 16 15 14 45 45 H 0.96992 * 120.00409 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.47103 * 300.00247 * 25 2 1 47 47 H 1.09001 * 109.47066 * 60.00169 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7206 1.2497 6 6 4.0805 -1.4416 0.0004 7 6 3.5705 -0.7204 -1.2488 8 1 3.9335 0.3074 -1.2486 9 7 4.0598 -1.4103 -2.4450 10 6 3.7070 -2.8131 -2.6773 11 6 4.8346 -0.7546 -3.3317 12 8 5.1271 0.4097 -3.1391 13 7 5.2852 -1.3895 -4.4318 14 6 6.1269 -0.6765 -5.3959 15 6 6.4977 -1.6181 -6.5435 16 6 7.3773 -0.8737 -7.5500 17 6 7.7420 -1.8010 -8.6806 18 1 7.3827 -2.8194 -8.6810 19 6 8.5352 -1.3494 -9.7140 20 7 8.8531 -2.1584 -10.7009 21 14 9.1572 0.4120 -9.7130 22 1 10.4649 0.4748 -9.0121 23 1 9.3229 0.8793 -11.1128 24 1 8.1783 1.2823 -9.0132 25 6 2.0400 -0.7212 -1.2491 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.6766 -0.2074 2.1393 30 1 1.6767 -1.7488 1.2493 31 1 3.9333 -1.2348 2.1395 32 1 3.9330 0.3072 1.2498 33 1 3.7176 -2.4693 0.0002 34 1 5.1706 -1.4408 0.0005 35 1 2.7804 -2.8647 -3.2490 36 1 4.5059 -3.3011 -3.2354 37 1 3.5720 -3.3171 -1.7203 38 1 5.0515 -2.3183 -4.5857 39 1 5.5810 0.1801 -5.7913 40 1 7.0346 -0.3318 -4.9006 41 1 7.0435 -2.4750 -6.1484 42 1 5.5898 -1.9625 -7.0387 43 1 6.8319 -0.0167 -7.9450 44 1 8.2851 -0.5297 -7.0545 45 1 9.4108 -1.8406 -11.4281 46 1 1.6767 -1.7489 -1.2491 47 1 1.6768 -0.2074 -2.1391 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171447997.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:13 Heat of formation + Delta-G solvation = -82.669047 kcal Electronic energy + Delta-G solvation = -22446.152359 eV Core-core repulsion = 19240.733445 eV Total energy + Delta-G solvation = -3205.418914 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.50789 -39.57155 -37.05232 -36.27349 -35.14582 -33.46960 -32.98099 -30.85895 -28.80713 -27.69012 -27.27215 -24.84734 -23.32987 -22.35940 -22.21423 -20.82547 -20.35899 -19.16907 -18.69957 -17.55404 -16.97470 -16.41522 -16.12136 -15.92781 -15.49980 -15.40376 -15.20727 -14.77398 -14.66691 -14.49092 -14.01885 -13.81969 -13.59728 -13.56794 -13.29221 -13.17698 -12.76384 -12.72767 -12.65882 -12.47338 -12.06028 -11.90057 -11.82482 -11.77220 -11.60310 -11.49229 -11.33425 -11.29258 -11.12349 -11.04955 -10.76131 -10.21715 -9.47431 -8.29410 -6.33109 1.36861 1.38524 1.50528 1.62260 2.10042 2.36433 2.98471 3.06298 3.68046 3.80685 3.94177 4.07057 4.10674 4.20036 4.21320 4.23933 4.42919 4.49403 4.51575 4.53042 4.63133 4.67356 4.76124 4.81743 4.87496 4.88938 4.89280 4.97372 5.03392 5.05715 5.13194 5.15649 5.27003 5.33072 5.39765 5.41000 5.42358 5.50488 5.55518 5.57376 5.60135 5.66269 5.95845 6.27496 6.74563 6.95219 7.31656 7.52953 8.86916 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038603 B = 0.002615 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.167142 B =10703.441427 C =10799.678649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 H 0.058 0.942 4 C -0.109 4.109 5 C -0.115 4.115 6 C -0.121 4.121 7 C 0.154 3.846 8 H 0.066 0.934 9 N -0.625 5.625 10 C 0.069 3.931 11 C 0.696 3.304 12 O -0.640 6.640 13 N -0.733 5.733 14 C 0.146 3.854 15 C -0.098 4.098 16 C -0.012 4.012 17 C -0.529 4.529 18 H 0.039 0.961 19 C 0.005 3.995 20 N -0.950 5.950 21 Si 0.946 3.054 22 H -0.267 1.267 23 H -0.284 1.284 24 H -0.249 1.249 25 C -0.112 4.112 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.409 0.591 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.020 0.980 44 H 0.019 0.981 45 H 0.266 0.734 46 H 0.082 0.918 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.225 -0.431 26.950 31.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.076 0.924 4 C -0.146 4.146 5 C -0.154 4.154 6 C -0.159 4.159 7 C 0.050 3.950 8 H 0.085 0.915 9 N -0.361 5.361 10 C -0.073 4.073 11 C 0.397 3.603 12 O -0.523 6.523 13 N -0.390 5.390 14 C 0.021 3.979 15 C -0.136 4.136 16 C -0.050 4.050 17 C -0.568 4.568 18 H 0.057 0.943 19 C -0.192 4.192 20 N -0.590 5.590 21 Si 0.770 3.230 22 H -0.192 1.192 23 H -0.210 1.210 24 H -0.172 1.172 25 C -0.151 4.151 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.247 0.753 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.039 0.961 44 H 0.038 0.962 45 H 0.075 0.925 46 H 0.100 0.900 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.925 0.366 26.910 31.792 hybrid contribution 0.618 0.223 -0.912 1.124 sum -16.307 0.588 25.998 30.695 Atomic orbital electron populations 1.21787 0.94071 1.02372 1.01822 1.21101 0.96312 0.99130 0.94391 0.92362 1.21593 0.94585 1.01312 0.97143 1.21500 0.96319 1.00423 0.97112 1.21849 1.00043 1.00517 0.93499 1.21034 0.94413 0.96499 0.83062 0.91540 1.47166 1.52572 1.13404 1.22963 1.21970 1.01400 0.79915 1.03983 1.16156 0.79215 0.84341 0.80603 1.90856 1.65111 1.17706 1.78588 1.45213 1.54999 1.16190 1.22580 1.21146 0.93331 0.94887 0.88516 1.21465 0.99921 0.97952 0.94227 1.19461 0.95643 0.95945 0.93932 1.21449 1.30810 0.98581 1.05910 0.94306 1.25971 0.96125 1.02215 0.94889 1.70051 1.38964 1.38128 1.11902 0.85710 0.79640 0.80084 0.77553 1.19245 1.20973 1.17246 1.21881 0.93241 1.01944 0.98011 0.91820 0.93337 0.91845 0.90919 0.90714 0.90228 0.92844 0.89780 0.93143 0.91463 0.90775 0.88429 0.75295 0.92941 0.92821 0.91669 0.91713 0.96139 0.96220 0.92500 0.89982 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.19 71.98 0.66 -0.87 16 2 C -0.09 -1.18 2.72 -10.80 -0.03 -1.21 16 3 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.11 -1.10 5.20 30.59 0.16 -0.94 16 5 C -0.12 -1.42 5.92 30.60 0.18 -1.24 16 6 C -0.12 -1.82 5.18 30.60 0.16 -1.66 16 7 C 0.15 3.10 2.52 45.01 0.11 3.21 16 8 H 0.07 1.83 6.90 -2.39 -0.02 1.81 16 9 N -0.63 -13.85 2.76 -840.52 -2.32 -16.17 16 10 C 0.07 0.94 9.26 127.77 1.18 2.12 16 11 C 0.70 21.62 8.28 179.06 1.48 23.10 16 12 O -0.64 -25.76 15.67 -3.99 -0.06 -25.82 16 13 N -0.73 -20.89 5.42 -478.53 -2.59 -23.48 16 14 C 0.15 4.94 5.67 86.38 0.49 5.43 16 15 C -0.10 -3.62 5.27 30.60 0.16 -3.46 16 16 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 17 C -0.53 -30.27 9.66 25.60 0.25 -30.03 16 18 H 0.04 2.40 7.99 -2.91 -0.02 2.38 16 19 C 0.00 0.29 5.47 84.65 0.46 0.75 16 20 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 21 Si 0.95 44.86 27.47 68.60 1.88 46.74 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 24 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 25 C -0.11 -1.76 4.49 30.61 0.14 -1.63 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 0.94 6.66 -2.39 -0.02 0.93 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 36 H 0.07 0.93 6.36 -2.39 -0.02 0.92 16 37 H 0.10 0.87 6.43 -2.39 -0.02 0.86 16 38 H 0.41 9.17 6.20 -92.71 -0.58 8.59 16 39 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.02 0.94 7.20 -2.39 -0.02 0.93 16 44 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 45 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 46 H 0.08 1.01 7.68 -2.39 -0.02 0.99 16 47 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -72.94 362.35 3.02 -69.92 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.29 Total: 14.92 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 5.53 Total: -6.84 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -4.62 Total: -98.92 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.06 Total: -25.82 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.74 kcal Total: -72.94 3.02 -69.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171447997.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.753 kcal (2) G-P(sol) polarization free energy of solvation -72.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds