Wall clock time and date at job start Tue Mar 31 2020 06:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47007 * 2 1 4 4 C 1.53001 * 109.47264 * 240.00316 * 2 1 3 5 5 C 1.52996 * 109.47264 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47208 * 59.99897 * 5 4 2 7 7 C 1.53004 * 109.47082 * 299.99842 * 6 5 4 8 8 C 1.52999 * 109.47208 * 120.00214 * 2 1 3 9 9 H 1.09000 * 109.46545 * 299.99972 * 8 2 1 10 10 N 1.46493 * 109.47234 * 60.00305 * 8 2 1 11 11 C 1.46497 * 120.00312 * 111.32887 * 10 8 2 12 12 C 1.34780 * 119.99851 * 291.33019 * 10 8 2 13 13 O 1.21595 * 119.99805 * 352.66231 * 12 10 8 14 14 N 1.34778 * 120.00150 * 172.66913 * 12 10 8 15 15 C 1.46502 * 119.99979 * 179.97438 * 14 12 10 16 16 C 1.52994 * 109.47121 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47426 * 179.97438 * 16 15 14 18 18 C 1.50704 * 109.47307 * 180.02562 * 17 16 15 19 19 H 1.07993 * 119.99546 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99657 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00066 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99658 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47457 * 89.99389 * 22 20 18 24 24 H 1.48508 * 109.47267 * 329.99446 * 22 20 18 25 25 H 1.48503 * 109.47014 * 210.00010 * 22 20 18 26 26 H 1.09000 * 109.47415 * 291.09507 * 1 2 3 27 27 H 1.09000 * 109.47232 * 51.10075 * 1 2 3 28 28 H 1.09001 * 109.46804 * 171.09707 * 1 2 3 29 29 H 1.08998 * 109.47306 * 59.99326 * 4 2 1 30 30 H 1.09005 * 109.46850 * 299.99779 * 4 2 1 31 31 H 1.09002 * 109.47494 * 299.99532 * 5 4 2 32 32 H 1.09005 * 109.47224 * 179.97438 * 5 4 2 33 33 H 1.09004 * 109.47180 * 179.97438 * 6 5 4 34 34 H 1.08996 * 109.47535 * 60.00051 * 6 5 4 35 35 H 1.08996 * 109.47107 * 300.00472 * 7 6 5 36 36 H 1.08997 * 109.47102 * 179.97438 * 7 6 5 37 37 H 1.08995 * 109.47396 * 269.34407 * 11 10 8 38 38 H 1.08995 * 109.47200 * 29.34762 * 11 10 8 39 39 H 1.09009 * 109.47151 * 149.34470 * 11 10 8 40 40 H 0.96998 * 119.99829 * 359.97438 * 14 12 10 41 41 H 1.08997 * 109.47152 * 59.99623 * 15 14 12 42 42 H 1.09004 * 109.46742 * 299.99590 * 15 14 12 43 43 H 1.09002 * 109.47305 * 59.99496 * 16 15 14 44 44 H 1.09003 * 109.47644 * 300.00254 * 16 15 14 45 45 H 1.08997 * 109.46997 * 59.99842 * 17 16 15 46 46 H 1.09004 * 109.46591 * 299.99997 * 17 16 15 47 47 H 0.96998 * 120.00265 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4415 -0.0004 7 6 3.5705 -0.7203 1.2489 8 6 2.0400 -0.7213 1.2492 9 1 1.6766 -0.2074 2.1391 10 7 1.5517 -2.1025 1.2491 11 6 2.4901 -3.2111 1.0578 12 6 0.2392 -2.3532 1.4251 13 8 -0.5189 -1.4483 1.7161 14 7 -0.2329 -3.6071 1.2785 15 6 -1.6595 -3.8797 1.4703 16 6 -1.9287 -5.3691 1.2463 17 6 -3.4184 -5.6540 1.4472 18 6 -3.6835 -7.1211 1.2272 19 1 -2.8707 -7.7839 0.9694 20 6 -4.9637 -7.6170 1.3540 21 7 -5.9535 -6.8097 1.6674 22 14 -5.2924 -9.4354 1.0806 23 1 -5.1495 -10.1632 2.3670 24 1 -4.3175 -9.9722 0.0972 25 1 -6.6713 -9.6163 0.5598 26 1 -0.3634 0.3699 0.9588 27 1 -0.3634 0.6453 -0.7998 28 1 -0.3633 -1.0153 -0.1590 29 1 1.6766 -0.2074 -2.1392 30 1 1.6767 -1.7489 -1.2493 31 1 3.9330 0.3072 -1.2499 32 1 3.9333 -1.2348 -2.1394 33 1 5.1705 -1.4415 -0.0009 34 1 3.7176 -2.4693 -0.0001 35 1 3.9334 0.3075 1.2486 36 1 3.9339 -1.2341 2.1388 37 1 2.5679 -3.4421 -0.0045 38 1 3.4704 -2.9276 1.4408 39 1 2.1301 -4.0887 1.5950 40 1 0.3719 -4.3289 1.0461 41 1 -2.2403 -3.2946 0.7573 42 1 -1.9483 -3.6066 2.4853 43 1 -1.3478 -5.9545 1.9590 44 1 -1.6399 -5.6420 0.2313 45 1 -3.9996 -5.0686 0.7348 46 1 -3.7067 -5.3813 2.4625 47 1 -5.7829 -5.8654 1.8090 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171449133.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:30 Heat of formation + Delta-G solvation = -23.117847 kcal Electronic energy + Delta-G solvation = -23430.361094 eV Core-core repulsion = 20227.524514 eV Total energy + Delta-G solvation = -3202.836580 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.12942 -38.49798 -35.54885 -34.78040 -33.49389 -32.79482 -31.23310 -30.06484 -27.66901 -26.39163 -25.54627 -23.18813 -22.32192 -21.56644 -20.85250 -20.52929 -19.12353 -17.79980 -16.84929 -16.63946 -15.97506 -15.19580 -14.82709 -14.61813 -14.47479 -14.10996 -13.89795 -13.73279 -13.48245 -13.11354 -12.90402 -12.63801 -12.42915 -12.21164 -12.12357 -11.86574 -11.61288 -11.55340 -11.39351 -10.87516 -10.80341 -10.73503 -10.46944 -10.38518 -10.16368 -10.14648 -9.97947 -9.93881 -9.58317 -8.67160 -8.56292 -8.42125 -8.32285 -6.35826 -4.05459 2.71559 3.36242 3.43364 3.47119 3.62789 4.05180 4.45736 4.47101 4.54222 4.55362 4.82847 4.91783 4.97460 5.14245 5.17817 5.23648 5.25579 5.35352 5.41412 5.42443 5.46884 5.61601 5.71440 5.73532 5.74608 5.77108 5.89471 5.94473 5.99890 6.09350 6.11416 6.19118 6.29165 6.41552 6.52218 6.56405 6.71807 6.79117 6.93525 7.04738 7.38064 7.50624 8.09475 8.20122 8.46280 8.78133 8.88543 9.67178 11.05054 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032505 B = 0.003058 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.187712 B = 9154.134700 C = 9439.529629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.112 4.112 5 C -0.116 4.116 6 C -0.161 4.161 7 C -0.125 4.125 8 C 0.173 3.827 9 H 0.077 0.923 10 N -0.627 5.627 11 C 0.068 3.932 12 C 0.700 3.300 13 O -0.579 6.579 14 N -0.743 5.743 15 C 0.135 3.865 16 C -0.113 4.113 17 C 0.011 3.989 18 C -0.603 4.603 19 H 0.049 0.951 20 C 0.014 3.986 21 N -0.913 5.913 22 Si 1.072 2.928 23 H -0.288 1.288 24 H -0.289 1.289 25 H -0.284 1.284 26 H 0.074 0.926 27 H 0.029 0.971 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.392 0.608 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.010 0.990 46 H 0.010 0.990 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.081 11.939 -3.664 26.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.121 4.121 3 H 0.090 0.910 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.197 4.197 7 C -0.163 4.163 8 C 0.069 3.931 9 H 0.095 0.905 10 N -0.366 5.366 11 C -0.075 4.075 12 C 0.401 3.599 13 O -0.457 6.457 14 N -0.399 5.399 15 C 0.012 3.988 16 C -0.151 4.151 17 C -0.026 4.026 18 C -0.642 4.642 19 H 0.067 0.933 20 C -0.190 4.190 21 N -0.549 5.549 22 Si 0.901 3.099 23 H -0.215 1.215 24 H -0.215 1.215 25 H -0.210 1.210 26 H 0.093 0.907 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.227 0.773 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.028 0.972 46 H 0.028 0.972 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 21.303 11.461 -3.448 24.435 hybrid contribution 1.612 0.822 -0.179 1.818 sum 22.915 12.282 -3.627 26.251 Atomic orbital electron populations 1.22226 0.93388 1.02258 1.01541 1.21574 0.97269 0.98715 0.94497 0.91025 1.21552 0.94956 1.01013 0.97431 1.21503 0.95921 1.00388 0.97581 1.22512 1.00326 1.02524 0.94373 1.21802 0.94190 1.01771 0.98489 1.20870 0.92916 0.81150 0.98183 0.90466 1.46967 1.05551 1.06504 1.77570 1.22191 0.94974 0.89633 1.00726 1.15816 0.81763 0.83398 0.78876 1.90953 1.56655 1.43445 1.54664 1.45530 1.10945 1.08002 1.75374 1.21465 0.78324 0.97827 1.01224 1.21740 1.00882 0.91669 1.00804 1.19152 0.89666 0.97520 0.96309 1.22045 0.96306 0.93469 1.52342 0.93289 1.25863 0.92519 1.06548 0.94074 1.70739 1.33808 1.06347 1.43997 0.83502 0.75801 0.74149 0.76492 1.21469 1.21516 1.20982 0.90694 0.95166 0.91982 0.92366 0.91951 0.92396 0.92272 0.92176 0.88392 0.90481 0.91334 0.92314 0.89455 0.91936 0.77310 0.92141 0.92128 0.92697 0.92688 0.97180 0.97189 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 7.34 37.16 0.27 -1.62 16 2 C -0.10 -1.08 2.54 -90.62 -0.23 -1.31 16 3 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.11 -1.08 5.03 -26.73 -0.13 -1.21 16 5 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 6 C -0.16 -1.06 5.13 -26.73 -0.14 -1.20 16 7 C -0.12 -0.91 4.95 -26.70 -0.13 -1.04 16 8 C 0.17 1.78 2.60 -67.91 -0.18 1.61 16 9 H 0.08 0.92 7.99 -51.93 -0.41 0.50 16 10 N -0.63 -7.09 2.23 -181.18 -0.40 -7.49 16 11 C 0.07 0.54 7.69 59.85 0.46 1.00 16 12 C 0.70 10.62 6.52 -86.91 -0.57 10.06 16 13 O -0.58 -10.69 11.81 5.28 0.06 -10.63 16 14 N -0.74 -11.04 5.39 -65.22 -0.35 -11.39 16 15 C 0.14 2.43 5.67 -4.04 -0.02 2.41 16 16 C -0.11 -2.26 5.27 -26.73 -0.14 -2.40 16 17 C 0.01 0.28 4.28 -27.88 -0.12 0.17 16 18 C -0.60 -17.20 9.11 -34.44 -0.31 -17.51 16 19 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 20 C 0.01 0.40 5.46 -17.82 -0.10 0.31 16 21 N -0.91 -28.29 13.65 55.43 0.76 -27.53 16 22 Si 1.07 25.38 29.90 -169.99 -5.08 20.30 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H 0.07 1.17 6.63 -51.93 -0.34 0.83 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 1.00 5.41 -51.93 -0.28 0.72 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.68 7.06 -51.93 -0.37 0.32 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.10 0.64 3.10 -53.85 -0.17 0.47 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.46 7.30 -51.93 -0.38 0.08 16 37 H 0.06 0.43 6.48 -51.93 -0.34 0.09 16 38 H 0.09 0.55 4.77 -51.93 -0.25 0.30 16 39 H 0.06 0.49 6.73 -51.92 -0.35 0.14 16 40 H 0.39 4.86 6.43 -40.82 -0.26 4.60 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.01 0.27 8.01 -51.93 -0.42 -0.15 16 46 H 0.01 0.26 8.01 -51.93 -0.42 -0.15 16 47 H 0.27 8.34 7.22 -40.82 -0.29 8.05 16 LS Contribution 344.27 15.07 5.19 5.19 Total: -1.00 -32.52 344.27 -9.46 -41.98 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -8.13 Total: 1.35 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -1.50 Total: -11.77 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.00 Total: -46.42 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.06 Total: -10.63 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.08 Total: 20.30 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.52 -9.46 -41.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171449133.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.858 kcal (2) G-P(sol) polarization free energy of solvation -32.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds