Wall clock time and date at job start Tue Mar 31 2020 06:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47007 * 2 1 4 4 C 1.53001 * 109.47264 * 240.00316 * 2 1 3 5 5 C 1.52996 * 109.47264 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47208 * 59.99897 * 5 4 2 7 7 C 1.53004 * 109.47082 * 299.99842 * 6 5 4 8 8 C 1.52999 * 109.47208 * 120.00214 * 2 1 3 9 9 H 1.09000 * 109.46545 * 299.99972 * 8 2 1 10 10 N 1.46493 * 109.47234 * 60.00305 * 8 2 1 11 11 C 1.46497 * 120.00312 * 111.32887 * 10 8 2 12 12 C 1.34780 * 119.99851 * 291.33019 * 10 8 2 13 13 O 1.21595 * 119.99805 * 352.66231 * 12 10 8 14 14 N 1.34778 * 120.00150 * 172.66913 * 12 10 8 15 15 C 1.46502 * 119.99979 * 179.97438 * 14 12 10 16 16 C 1.52994 * 109.47121 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47426 * 179.97438 * 16 15 14 18 18 C 1.50704 * 109.47307 * 180.02562 * 17 16 15 19 19 H 1.07993 * 119.99546 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99657 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00066 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99658 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47457 * 89.99389 * 22 20 18 24 24 H 1.48508 * 109.47267 * 329.99446 * 22 20 18 25 25 H 1.48503 * 109.47014 * 210.00010 * 22 20 18 26 26 H 1.09000 * 109.47415 * 291.09507 * 1 2 3 27 27 H 1.09000 * 109.47232 * 51.10075 * 1 2 3 28 28 H 1.09001 * 109.46804 * 171.09707 * 1 2 3 29 29 H 1.08998 * 109.47306 * 59.99326 * 4 2 1 30 30 H 1.09005 * 109.46850 * 299.99779 * 4 2 1 31 31 H 1.09002 * 109.47494 * 299.99532 * 5 4 2 32 32 H 1.09005 * 109.47224 * 179.97438 * 5 4 2 33 33 H 1.09004 * 109.47180 * 179.97438 * 6 5 4 34 34 H 1.08996 * 109.47535 * 60.00051 * 6 5 4 35 35 H 1.08996 * 109.47107 * 300.00472 * 7 6 5 36 36 H 1.08997 * 109.47102 * 179.97438 * 7 6 5 37 37 H 1.08995 * 109.47396 * 269.34407 * 11 10 8 38 38 H 1.08995 * 109.47200 * 29.34762 * 11 10 8 39 39 H 1.09009 * 109.47151 * 149.34470 * 11 10 8 40 40 H 0.96998 * 119.99829 * 359.97438 * 14 12 10 41 41 H 1.08997 * 109.47152 * 59.99623 * 15 14 12 42 42 H 1.09004 * 109.46742 * 299.99590 * 15 14 12 43 43 H 1.09002 * 109.47305 * 59.99496 * 16 15 14 44 44 H 1.09003 * 109.47644 * 300.00254 * 16 15 14 45 45 H 1.08997 * 109.46997 * 59.99842 * 17 16 15 46 46 H 1.09004 * 109.46591 * 299.99997 * 17 16 15 47 47 H 0.96998 * 120.00265 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4415 -0.0004 7 6 3.5705 -0.7203 1.2489 8 6 2.0400 -0.7213 1.2492 9 1 1.6766 -0.2074 2.1391 10 7 1.5517 -2.1025 1.2491 11 6 2.4901 -3.2111 1.0578 12 6 0.2392 -2.3532 1.4251 13 8 -0.5189 -1.4483 1.7161 14 7 -0.2329 -3.6071 1.2785 15 6 -1.6595 -3.8797 1.4703 16 6 -1.9287 -5.3691 1.2463 17 6 -3.4184 -5.6540 1.4472 18 6 -3.6835 -7.1211 1.2272 19 1 -2.8707 -7.7839 0.9694 20 6 -4.9637 -7.6170 1.3540 21 7 -5.9535 -6.8097 1.6674 22 14 -5.2924 -9.4354 1.0806 23 1 -5.1495 -10.1632 2.3670 24 1 -4.3175 -9.9722 0.0972 25 1 -6.6713 -9.6163 0.5598 26 1 -0.3634 0.3699 0.9588 27 1 -0.3634 0.6453 -0.7998 28 1 -0.3633 -1.0153 -0.1590 29 1 1.6766 -0.2074 -2.1392 30 1 1.6767 -1.7489 -1.2493 31 1 3.9330 0.3072 -1.2499 32 1 3.9333 -1.2348 -2.1394 33 1 5.1705 -1.4415 -0.0009 34 1 3.7176 -2.4693 -0.0001 35 1 3.9334 0.3075 1.2486 36 1 3.9339 -1.2341 2.1388 37 1 2.5679 -3.4421 -0.0045 38 1 3.4704 -2.9276 1.4408 39 1 2.1301 -4.0887 1.5950 40 1 0.3719 -4.3289 1.0461 41 1 -2.2403 -3.2946 0.7573 42 1 -1.9483 -3.6066 2.4853 43 1 -1.3478 -5.9545 1.9590 44 1 -1.6399 -5.6420 0.2313 45 1 -3.9996 -5.0686 0.7348 46 1 -3.7067 -5.3813 2.4625 47 1 -5.7829 -5.8654 1.8090 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171449133.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:29 Heat of formation + Delta-G solvation = -42.602538 kcal Electronic energy + Delta-G solvation = -23431.206014 eV Core-core repulsion = 20227.524514 eV Total energy + Delta-G solvation = -3203.681500 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.09736 -39.52298 -37.13408 -35.90414 -35.19569 -33.65032 -32.83134 -31.00996 -28.53092 -28.09616 -26.54606 -24.99427 -23.26309 -22.57618 -22.38029 -21.42125 -20.18142 -18.93509 -18.85391 -17.68991 -17.11466 -16.40606 -15.78432 -15.69082 -15.60100 -15.46416 -15.19541 -14.97334 -14.80295 -14.33625 -14.07520 -13.84255 -13.60693 -13.30903 -13.12702 -12.82549 -12.78673 -12.64154 -12.56200 -12.47644 -12.31568 -12.01433 -11.85445 -11.81894 -11.66462 -11.23828 -11.10939 -10.91901 -10.74105 -10.62592 -10.54926 -10.00286 -9.38892 -8.69141 -6.40223 1.53553 1.63320 1.65566 1.80575 2.16931 2.57924 3.00527 3.16361 3.73283 3.76347 3.85300 4.04498 4.10193 4.15547 4.21097 4.29570 4.41246 4.47348 4.51460 4.53395 4.56631 4.69834 4.75030 4.78878 4.80174 4.83735 4.89272 4.95300 4.96504 5.06010 5.16061 5.22137 5.30992 5.32857 5.37466 5.40170 5.43101 5.46715 5.47551 5.63652 5.73174 5.96819 5.99726 6.18451 6.55962 6.99679 7.43050 7.60849 8.71772 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032505 B = 0.003058 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.187712 B = 9154.134700 C = 9439.529629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.098 4.098 3 H 0.086 0.914 4 C -0.108 4.108 5 C -0.112 4.112 6 C -0.158 4.158 7 C -0.117 4.117 8 C 0.168 3.832 9 H 0.056 0.944 10 N -0.618 5.618 11 C 0.059 3.941 12 C 0.693 3.307 13 O -0.619 6.619 14 N -0.735 5.735 15 C 0.153 3.847 16 C -0.093 4.093 17 C 0.009 3.991 18 C -0.617 4.617 19 H 0.058 0.942 20 C -0.043 4.043 21 N -0.941 5.941 22 Si 1.123 2.877 23 H -0.272 1.272 24 H -0.265 1.265 25 H -0.285 1.285 26 H 0.049 0.951 27 H 0.032 0.968 28 H 0.034 0.966 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.066 0.934 40 H 0.407 0.593 41 H 0.043 0.957 42 H 0.045 0.955 43 H 0.067 0.933 44 H 0.065 0.935 45 H -0.012 1.012 46 H -0.011 1.011 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.487 10.788 -4.390 28.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.118 4.118 3 H 0.104 0.896 4 C -0.146 4.146 5 C -0.150 4.150 6 C -0.195 4.195 7 C -0.154 4.154 8 C 0.064 3.936 9 H 0.074 0.926 10 N -0.355 5.355 11 C -0.083 4.083 12 C 0.395 3.605 13 O -0.500 6.500 14 N -0.392 5.392 15 C 0.028 3.972 16 C -0.131 4.131 17 C -0.029 4.029 18 C -0.655 4.655 19 H 0.076 0.924 20 C -0.240 4.240 21 N -0.578 5.578 22 Si 0.944 3.056 23 H -0.197 1.197 24 H -0.189 1.189 25 H -0.211 1.211 26 H 0.068 0.932 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.131 0.869 39 H 0.085 0.915 40 H 0.244 0.756 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.006 0.994 46 H 0.007 0.993 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 24.792 10.311 -4.184 27.175 hybrid contribution 0.557 1.267 0.044 1.384 sum 25.349 11.577 -4.140 28.174 Atomic orbital electron populations 1.22071 0.96130 1.00315 1.00084 1.21562 0.94722 0.99936 0.95540 0.89604 1.21500 0.96929 0.99725 0.96424 1.21482 0.93709 1.01226 0.98551 1.22516 1.01488 1.02258 0.93216 1.21790 0.91082 1.03019 0.99523 1.20991 0.95311 0.80297 0.96985 0.92632 1.47004 1.04444 1.07999 1.76084 1.22515 0.95248 0.88574 1.01942 1.16027 0.82975 0.82746 0.78738 1.90941 1.58165 1.44520 1.56373 1.45206 1.09674 1.08723 1.75594 1.20987 0.80231 0.96214 0.99788 1.21456 0.97009 0.92942 1.01718 1.19108 0.93250 0.96184 0.94361 1.22501 0.96687 0.94797 1.51504 0.92386 1.27536 0.92686 1.10704 0.93090 1.70884 1.34752 1.05867 1.46299 0.82873 0.76137 0.68959 0.77677 1.19738 1.18930 1.21095 0.93221 0.94906 0.94649 0.92757 0.93432 0.91647 0.91427 0.90164 0.88154 0.89218 0.90149 0.90929 0.86901 0.91549 0.75562 0.93873 0.93682 0.91445 0.91610 0.99371 0.99298 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.72 7.34 71.98 0.53 -3.19 16 2 C -0.10 -2.03 2.54 -10.80 -0.03 -2.05 16 3 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 4 C -0.11 -1.92 5.03 30.59 0.15 -1.76 16 5 C -0.11 -1.32 5.92 30.59 0.18 -1.14 16 6 C -0.16 -1.46 5.13 30.60 0.16 -1.30 16 7 C -0.12 -1.31 4.95 30.61 0.15 -1.16 16 8 C 0.17 3.27 2.60 45.01 0.12 3.39 16 9 H 0.06 1.33 7.99 -2.39 -0.02 1.31 16 10 N -0.62 -13.30 2.23 -845.40 -1.88 -15.18 16 11 C 0.06 0.77 7.69 127.77 0.98 1.75 16 12 C 0.69 21.29 6.52 179.05 1.17 22.46 16 13 O -0.62 -24.00 11.81 -4.01 -0.05 -24.05 16 14 N -0.73 -21.67 5.39 -478.53 -2.58 -24.25 16 15 C 0.15 5.65 5.67 86.38 0.49 6.14 16 16 C -0.09 -3.72 5.27 30.59 0.16 -3.55 16 17 C 0.01 0.46 4.28 29.85 0.13 0.58 16 18 C -0.62 -35.23 9.11 25.60 0.23 -35.00 16 19 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 20 C -0.04 -2.53 5.46 84.66 0.46 -2.07 16 21 N -0.94 -59.65 13.65 21.45 0.29 -59.36 16 22 Si 1.12 50.24 29.90 68.60 2.05 52.29 16 23 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 24 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 25 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 26 H 0.05 1.66 6.63 -2.39 -0.02 1.65 16 27 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.03 1.19 5.41 -2.39 -0.01 1.18 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.05 0.98 7.06 -2.38 -0.02 0.96 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.10 0.89 3.10 -4.19 -0.01 0.87 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.83 16 36 H 0.08 0.76 7.30 -2.39 -0.02 0.74 16 37 H 0.07 0.82 6.48 -2.39 -0.02 0.80 16 38 H 0.11 0.95 4.77 -2.39 -0.01 0.94 16 39 H 0.07 0.85 6.73 -2.38 -0.02 0.83 16 40 H 0.41 9.46 6.43 -92.71 -0.60 8.86 16 41 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 44 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 45 H -0.01 -0.68 8.01 -2.39 -0.02 -0.70 16 46 H -0.01 -0.64 8.01 -2.38 -0.02 -0.66 16 47 H 0.25 16.45 7.22 -92.71 -0.67 15.78 16 Total: -1.00 -73.15 344.27 3.16 -69.99 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.44 Total: 17.47 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: 4.89 Total: -16.90 kcal Atomic # 7 Polarization: -94.62 SS G_CDS: -4.17 Total: -98.79 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.05 Total: -24.05 kcal Atomic # 14 Polarization: 50.24 SS G_CDS: 2.05 Total: 52.29 kcal Total: -73.15 3.16 -69.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171449133.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.383 kcal (2) G-P(sol) polarization free energy of solvation -73.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds